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  1. Transcript 'KH2012:KH.C2.471.v2....'

Transcript Model

Transcript Id

KH2012:KH.C2.471.v2.A.nonSL15-1

Possible name(s)

DDX17; DDX42; DDX5

Location

KhC2 [80,477 / 82,610]

Sequences

Amino acid sequence

Length: 590

>KH.C2.471.v2.A.nonSL15-1
LTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSDRGGKYDN
SAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSNLKKPVLF
FHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPAMIH
INAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRDLE
RGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQT
LMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLMEE
IMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKSPIL
VATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQCKD
LIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGGAGGQRSS
GGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM

Nucleotide sequence

Length: 2,133

>KH2012:KH.C2.471.v2.A.nonSL15-1
CTTACTGTAACAAGAATGCCCGGTTATGGTTCAAGAGATCGTGGAGGTGACCGTGGTTAC
GGCAGCTATGGAGGGGGACGTAGTAATGGCTCTTATGGAGGAGGAAACGATCGCTGGGGA
GGAAGGGGAGGTGGGGGAGGCGGAAGAGGAAGATCGGATCGAGGTGGGAAATATGACAAC
TCTGCTGGAAGCGGTCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTTAACTCCGTTTCAA
AAAGAATTTTATCAAGAACATCCAAGTACTGCAGGAAGACCAGTCCATCATGTTCAAGAA
TATTATCAGAAGCATGAGGTTACAGTTACTGGGTCAAACTTAAAGAAACCTGTGCTTTTC
TTTCATGAGGCAAGTTTTCCAGATTACATTAATAATCAGTTGCTGTCCAATGGATTTAAG
GCACCAACTCCTATACAAGCAATTGGTTGGCCACATGCACTTGGCGGTCAAGATCTTGTT
GGGATTGCTCAAACTGGATCTGGTAAAACACTCTCATTTATTTTGCCAGCTATGATTCAC
ATTAATGCTCAGCCATATCTTGAAAGAGGAGATGGTCCAATTGCTCTTGTACTTTGCCCT
ACAAGGGAGTTGGCACAACAAGTTCAAGCAGTTGCAAATGATTATGGGCAGCTTTGCCAC
ATTAGGAATACCTGTGTATATGGTGGGGCATCAAAAGCCCCTCAAATTAGAGATTTGGAG
AGAGGTTGTGAAATCGTGATCGCTACACCAGGTCGCCTTATTGATTTTCTAGAAGCCCGC
AAGACAAACCTTCGCAGATGTACTTACTTGGTTCTTGATGAAGCTGACAGAATGTTGGAC
ATGGGTTTTGAACCACAAATACGAAAAATTATTGATCAGATTCGTCCAGACAGACAAACA
CTGATGTGGAGTGCAACATGGCCAAAGGAAGTTCAAAAGCTCGCAAATGATTTTCTCAGA
GATAATGTTCATATCCAAATTGGATCTGTGAATATTTCTGCGAATCACAATATTCTACAA
ATCGTTGATGTTTGTACAGAAGATGAAAAATCCGAAAAGCTAATGAGATTGATGGAAGAA
ATAATGGGAGAGGCAGAGAATAAGACAATCATATTCACAGAAACTAAGAGAAAATGTGAT
ATTCTCACTCGCAACATGAGGCGTGATGGTTGGCCTGCCATGTGTATTCATGGTGACAAA
TCCCAACCAGAGAGAGATTGGGTTTTAAATGAGTTTCGAACAGGAAAGTCTCCAATTCTG
GTTGCAACAGACGTGGCATCACGTGGTCTTGATGTTTCAGATATCAAATTTGTCATAAAT
TTTGATTTTCCAAATCAATGTGAAGATTACATTCATCGAATTGGGCGAACAGCAAGAGCG
AATCAAACTGGAACTGCATACACATTTTTCACACAAGCCAATGCTAAGCAGTGCAAAGAT
TTAATTGAAATCCTTAAGGAGGCAAAGCAGCAAATTAACCCAAGGTTGATGGAGTTGGCT
CAATCATCATGGGGAAATTTCGGTAAGAATCGCAGAGGTGGTGGCAGTAGTCGTGGAGGT
TATGGTTACGGAGGAGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGGACAACGTAGTAGT
GGTGGCTACAACAACAGTGGTGCCTATGGTGGAAAACCAGCTGGTGCATATGGGGGACAG
CAAACAAATGGTTACGCAAAACCACAACAAAATTTTGGTAACATGGCAGGTACACAGTTT
ATGATGATGCCAGGAGGTCCAGTCCCAATGTAAAAGAAACATTCCTAACAATGTATTTTA
ATCCACTAGTTTGTAATGCTTGTGTAAAGTTGAGCACAATCATACTTGGAAGAAAGGCTA
TTCTCTTCGTTTGCGCTGTAATATTTTCCAGTTACTACTACATAATACAGTCTGCTGCTT
TAACCGAAACCAAGCTTGGTTGTTGGTATGTAGCTTCAGCTTGTATATACCATGTTATTA
GACCACTTTTGTTCTTGATTTTAGCATTATTTATCAACCACGAATTTAGGCCAATTTTCT
TTATTACTAAGTTATCTAACCGAACTTGCTGATTTTAGGCGTTATGCCAGTGAGCTCGTA
GCGTACCATGTAAAATAAATTCTTTCAAAACAA

InterProScan

ProSiteProfiles
RNA_helicase_DEAD_Q_motif (IPR014014) - T[119-147] 9.737
SMART
Helicase_ATP-bd (IPR014001) - T[138-341] 1.5E-64
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[143-314] 6.2E-48
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[150-325] 32.031
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[191-479] 5.81E-76
ProSitePatterns
RNA-helicase_DEAD-box_CS (IPR000629) - T[271-279] .
CDD
Helicase_C (IPR001650) - T[337-469] 1.99347E-42
ProSiteProfiles
Helicase_C (IPR001650) - T[353-500] 25.029
Pfam
Helicase_C (IPR001650) - T[353-461] 1.1E-29
SMART
Helicase_C (IPR001650) - T[380-461] 1.9E-32

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX17_HUMAN 62.715 % 667 0
DDX5_HUMAN 58.033 % 669 0
DDX42_HUMAN 41.63 % 358 6.46E-113





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