Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Clone 'cien86223'
  2. Transcript 'KH2012:KH.C1.1061.v1...'
  3. Transcript 'Phmamm.CG.MTP2014.S8...'
  4. Transcript 'KH2012:KH.C2.471.v2....'

Transcript Model

Transcript Id

KH2012:KH.C2.471.v2.A.nonSL4-1

Possible name(s)

DDX17; DDX42; DDX5

Location

KhC2 [80,477 / 82,609]

Sequences

Amino acid sequence

Length: 589

>KH.C2.471.v2.A.nonSL4-1
TVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSDRGGKYDNS
AGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSNLKKPVLFF
HEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPAMIHI
NAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRDLER
GCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTL
MWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLMEEI
MGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKSPILV
ATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQCKDL
IEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGGAGGQRSSG
GYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM

Nucleotide sequence

Length: 2,132

>KH2012:KH.C2.471.v2.A.nonSL4-1
TTACTGTAACAAGAATGCCCGGTTATGGTTCAAGAGATCGTGGAGGTGACCGTGGTTACG
GCAGCTATGGAGGGGGACGTAGTAATGGCTCTTATGGAGGAGGAAACGATCGCTGGGGAG
GAAGGGGAGGTGGGGGAGGCGGAAGAGGAAGATCGGATCGAGGTGGGAAATATGACAACT
CTGCTGGAAGCGGTCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTTAACTCCGTTTCAAA
AAGAATTTTATCAAGAACATCCAAGTACTGCAGGAAGACCAGTCCATCATGTTCAAGAAT
ATTATCAGAAGCATGAGGTTACAGTTACTGGGTCAAACTTAAAGAAACCTGTGCTTTTCT
TTCATGAGGCAAGTTTTCCAGATTACATTAATAATCAGTTGCTGTCCAATGGATTTAAGG
CACCAACTCCTATACAAGCAATTGGTTGGCCACATGCACTTGGCGGTCAAGATCTTGTTG
GGATTGCTCAAACTGGATCTGGTAAAACACTCTCATTTATTTTGCCAGCTATGATTCACA
TTAATGCTCAGCCATATCTTGAAAGAGGAGATGGTCCAATTGCTCTTGTACTTTGCCCTA
CAAGGGAGTTGGCACAACAAGTTCAAGCAGTTGCAAATGATTATGGGCAGCTTTGCCACA
TTAGGAATACCTGTGTATATGGTGGGGCATCAAAAGCCCCTCAAATTAGAGATTTGGAGA
GAGGTTGTGAAATCGTGATCGCTACACCAGGTCGCCTTATTGATTTTCTAGAAGCCCGCA
AGACAAACCTTCGCAGATGTACTTACTTGGTTCTTGATGAAGCTGACAGAATGTTGGACA
TGGGTTTTGAACCACAAATACGAAAAATTATTGATCAGATTCGTCCAGACAGACAAACAC
TGATGTGGAGTGCAACATGGCCAAAGGAAGTTCAAAAGCTCGCAAATGATTTTCTCAGAG
ATAATGTTCATATCCAAATTGGATCTGTGAATATTTCTGCGAATCACAATATTCTACAAA
TCGTTGATGTTTGTACAGAAGATGAAAAATCCGAAAAGCTAATGAGATTGATGGAAGAAA
TAATGGGAGAGGCAGAGAATAAGACAATCATATTCACAGAAACTAAGAGAAAATGTGATA
TTCTCACTCGCAACATGAGGCGTGATGGTTGGCCTGCCATGTGTATTCATGGTGACAAAT
CCCAACCAGAGAGAGATTGGGTTTTAAATGAGTTTCGAACAGGAAAGTCTCCAATTCTGG
TTGCAACAGACGTGGCATCACGTGGTCTTGATGTTTCAGATATCAAATTTGTCATAAATT
TTGATTTTCCAAATCAATGTGAAGATTACATTCATCGAATTGGGCGAACAGCAAGAGCGA
ATCAAACTGGAACTGCATACACATTTTTCACACAAGCCAATGCTAAGCAGTGCAAAGATT
TAATTGAAATCCTTAAGGAGGCAAAGCAGCAAATTAACCCAAGGTTGATGGAGTTGGCTC
AATCATCATGGGGAAATTTCGGTAAGAATCGCAGAGGTGGTGGCAGTAGTCGTGGAGGTT
ATGGTTACGGAGGAGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGGACAACGTAGTAGTG
GTGGCTACAACAACAGTGGTGCCTATGGTGGAAAACCAGCTGGTGCATATGGGGGACAGC
AAACAAATGGTTACGCAAAACCACAACAAAATTTTGGTAACATGGCAGGTACACAGTTTA
TGATGATGCCAGGAGGTCCAGTCCCAATGTAAAAGAAACATTCCTAACAATGTATTTTAA
TCCACTAGTTTGTAATGCTTGTGTAAAGTTGAGCACAATCATACTTGGAAGAAAGGCTAT
TCTCTTCGTTTGCGCTGTAATATTTTCCAGTTACTACTACATAATACAGTCTGCTGCTTT
AACCGAAACCAAGCTTGGTTGTTGGTATGTAGCTTCAGCTTGTATATACCATGTTATTAG
ACCACTTTTGTTCTTGATTTTAGCATTATTTATCAACCACGAATTTAGGCCAATTTTCTT
TATTACTAAGTTATCTAACCGAACTTGCTGATTTTAGGCGTTATGCCAGTGAGCTCGTAG
CGTACCATGTAAAATAAATTCTTTCAAAACAA

InterProScan

ProSiteProfiles
RNA_helicase_DEAD_Q_motif (IPR014014) - T[118-146] 9.737
SMART
Helicase_ATP-bd (IPR014001) - T[137-340] 1.5E-64
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[142-313] 6.2E-48
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[149-324] 32.031
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[190-478] 5.77E-76
ProSitePatterns
RNA-helicase_DEAD-box_CS (IPR000629) - T[270-278] .
CDD
Helicase_C (IPR001650) - T[336-468] 1.8733E-42
ProSiteProfiles
Helicase_C (IPR001650) - T[352-499] 25.029
Pfam
Helicase_C (IPR001650) - T[352-460] 1.1E-29
SMART
Helicase_C (IPR001650) - T[379-460] 1.9E-32

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX17_HUMAN 62.715 % 667 0
DDX5_HUMAN 58.033 % 669 0
DDX42_HUMAN 41.63 % 358 5.52E-113