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  1. Clone 'AHC0AAA74YH07'
  2. Transcript 'Cisavi.CG.ENS81.R19....'
  3. EST 'BW265703'
  4. Clone 'cien222099'
  5. Transcript 'KH2012:KH.C2.471.v2....'

Transcript Model

Transcript Id

KH2012:KH.C2.471.v2.A.nonSL5-1

Possible name(s)

DDX17; DDX42; DDX5

Location

KhC2 [80,477 / 82,611]

Sequences

Amino acid sequence

Length: 590

>KH.C2.471.v2.A.nonSL5-1
LTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSDRGGKYDN
SAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSNLKKPVLF
FHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPAMIH
INAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRDLE
RGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQT
LMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLMEE
IMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKSPIL
VATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQCKD
LIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGGAGGQRSS
GGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM

Nucleotide sequence

Length: 2,134

>KH2012:KH.C2.471.v2.A.nonSL5-1
ACTTACTGTAACAAGAATGCCCGGTTATGGTTCAAGAGATCGTGGAGGTGACCGTGGTTA
CGGCAGCTATGGAGGGGGACGTAGTAATGGCTCTTATGGAGGAGGAAACGATCGCTGGGG
AGGAAGGGGAGGTGGGGGAGGCGGAAGAGGAAGATCGGATCGAGGTGGGAAATATGACAA
CTCTGCTGGAAGCGGTCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTTAACTCCGTTTCA
AAAAGAATTTTATCAAGAACATCCAAGTACTGCAGGAAGACCAGTCCATCATGTTCAAGA
ATATTATCAGAAGCATGAGGTTACAGTTACTGGGTCAAACTTAAAGAAACCTGTGCTTTT
CTTTCATGAGGCAAGTTTTCCAGATTACATTAATAATCAGTTGCTGTCCAATGGATTTAA
GGCACCAACTCCTATACAAGCAATTGGTTGGCCACATGCACTTGGCGGTCAAGATCTTGT
TGGGATTGCTCAAACTGGATCTGGTAAAACACTCTCATTTATTTTGCCAGCTATGATTCA
CATTAATGCTCAGCCATATCTTGAAAGAGGAGATGGTCCAATTGCTCTTGTACTTTGCCC
TACAAGGGAGTTGGCACAACAAGTTCAAGCAGTTGCAAATGATTATGGGCAGCTTTGCCA
CATTAGGAATACCTGTGTATATGGTGGGGCATCAAAAGCCCCTCAAATTAGAGATTTGGA
GAGAGGTTGTGAAATCGTGATCGCTACACCAGGTCGCCTTATTGATTTTCTAGAAGCCCG
CAAGACAAACCTTCGCAGATGTACTTACTTGGTTCTTGATGAAGCTGACAGAATGTTGGA
CATGGGTTTTGAACCACAAATACGAAAAATTATTGATCAGATTCGTCCAGACAGACAAAC
ACTGATGTGGAGTGCAACATGGCCAAAGGAAGTTCAAAAGCTCGCAAATGATTTTCTCAG
AGATAATGTTCATATCCAAATTGGATCTGTGAATATTTCTGCGAATCACAATATTCTACA
AATCGTTGATGTTTGTACAGAAGATGAAAAATCCGAAAAGCTAATGAGATTGATGGAAGA
AATAATGGGAGAGGCAGAGAATAAGACAATCATATTCACAGAAACTAAGAGAAAATGTGA
TATTCTCACTCGCAACATGAGGCGTGATGGTTGGCCTGCCATGTGTATTCATGGTGACAA
ATCCCAACCAGAGAGAGATTGGGTTTTAAATGAGTTTCGAACAGGAAAGTCTCCAATTCT
GGTTGCAACAGACGTGGCATCACGTGGTCTTGATGTTTCAGATATCAAATTTGTCATAAA
TTTTGATTTTCCAAATCAATGTGAAGATTACATTCATCGAATTGGGCGAACAGCAAGAGC
GAATCAAACTGGAACTGCATACACATTTTTCACACAAGCCAATGCTAAGCAGTGCAAAGA
TTTAATTGAAATCCTTAAGGAGGCAAAGCAGCAAATTAACCCAAGGTTGATGGAGTTGGC
TCAATCATCATGGGGAAATTTCGGTAAGAATCGCAGAGGTGGTGGCAGTAGTCGTGGAGG
TTATGGTTACGGAGGAGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGGACAACGTAGTAG
TGGTGGCTACAACAACAGTGGTGCCTATGGTGGAAAACCAGCTGGTGCATATGGGGGACA
GCAAACAAATGGTTACGCAAAACCACAACAAAATTTTGGTAACATGGCAGGTACACAGTT
TATGATGATGCCAGGAGGTCCAGTCCCAATGTAAAAGAAACATTCCTAACAATGTATTTT
AATCCACTAGTTTGTAATGCTTGTGTAAAGTTGAGCACAATCATACTTGGAAGAAAGGCT
ATTCTCTTCGTTTGCGCTGTAATATTTTCCAGTTACTACTACATAATACAGTCTGCTGCT
TTAACCGAAACCAAGCTTGGTTGTTGGTATGTAGCTTCAGCTTGTATATACCATGTTATT
AGACCACTTTTGTTCTTGATTTTAGCATTATTTATCAACCACGAATTTAGGCCAATTTTC
TTTATTACTAAGTTATCTAACCGAACTTGCTGATTTTAGGCGTTATGCCAGTGAGCTCGT
AGCGTACCATGTAAAATAAATTCTTTCAAAACAA

InterProScan

ProSiteProfiles
RNA_helicase_DEAD_Q_motif (IPR014014) - T[119-147] 9.737
SMART
Helicase_ATP-bd (IPR014001) - T[138-341] 1.5E-64
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[143-314] 6.2E-48
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[150-325] 32.031
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[191-479] 5.81E-76
ProSitePatterns
RNA-helicase_DEAD-box_CS (IPR000629) - T[271-279] .
CDD
Helicase_C (IPR001650) - T[337-469] 1.99347E-42
ProSiteProfiles
Helicase_C (IPR001650) - T[353-500] 25.029
Pfam
Helicase_C (IPR001650) - T[353-461] 1.1E-29
SMART
Helicase_C (IPR001650) - T[380-461] 1.9E-32

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX17_HUMAN 62.715 % 667 0
DDX5_HUMAN 58.033 % 669 0
DDX42_HUMAN 41.63 % 358 6.46E-113





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