- Transcript 'Boschl.CG.Botznik201...' >
- Clone 'cien45860' >
- Transcript 'KH2012:KH.C2.471.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.471.v2.A.nonSL5-1
Possible name(s)
DDX17; DDX42; DDX5
Gene model
Location
KhC2 [80,477 / 82,611]
Amino acid sequence
Length: 590
>KH.C2.471.v2.A.nonSL5-1
LTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSDRGGKYDN
SAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSNLKKPVLF
FHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPAMIH
INAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRDLE
RGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQT
LMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLMEE
IMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKSPIL
VATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQCKD
LIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGGAGGQRSS
GGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM
Nucleotide sequence
Length: 2,134
>KH2012:KH.C2.471.v2.A.nonSL5-1
ACTTACTGTAACAAGAATGCCCGGTTATGGTTCAAGAGATCGTGGAGGTGACCGTGGTTA
CGGCAGCTATGGAGGGGGACGTAGTAATGGCTCTTATGGAGGAGGAAACGATCGCTGGGG
AGGAAGGGGAGGTGGGGGAGGCGGAAGAGGAAGATCGGATCGAGGTGGGAAATATGACAA
CTCTGCTGGAAGCGGTCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTTAACTCCGTTTCA
AAAAGAATTTTATCAAGAACATCCAAGTACTGCAGGAAGACCAGTCCATCATGTTCAAGA
ATATTATCAGAAGCATGAGGTTACAGTTACTGGGTCAAACTTAAAGAAACCTGTGCTTTT
CTTTCATGAGGCAAGTTTTCCAGATTACATTAATAATCAGTTGCTGTCCAATGGATTTAA
GGCACCAACTCCTATACAAGCAATTGGTTGGCCACATGCACTTGGCGGTCAAGATCTTGT
TGGGATTGCTCAAACTGGATCTGGTAAAACACTCTCATTTATTTTGCCAGCTATGATTCA
CATTAATGCTCAGCCATATCTTGAAAGAGGAGATGGTCCAATTGCTCTTGTACTTTGCCC
TACAAGGGAGTTGGCACAACAAGTTCAAGCAGTTGCAAATGATTATGGGCAGCTTTGCCA
CATTAGGAATACCTGTGTATATGGTGGGGCATCAAAAGCCCCTCAAATTAGAGATTTGGA
GAGAGGTTGTGAAATCGTGATCGCTACACCAGGTCGCCTTATTGATTTTCTAGAAGCCCG
CAAGACAAACCTTCGCAGATGTACTTACTTGGTTCTTGATGAAGCTGACAGAATGTTGGA
CATGGGTTTTGAACCACAAATACGAAAAATTATTGATCAGATTCGTCCAGACAGACAAAC
ACTGATGTGGAGTGCAACATGGCCAAAGGAAGTTCAAAAGCTCGCAAATGATTTTCTCAG
AGATAATGTTCATATCCAAATTGGATCTGTGAATATTTCTGCGAATCACAATATTCTACA
AATCGTTGATGTTTGTACAGAAGATGAAAAATCCGAAAAGCTAATGAGATTGATGGAAGA
AATAATGGGAGAGGCAGAGAATAAGACAATCATATTCACAGAAACTAAGAGAAAATGTGA
TATTCTCACTCGCAACATGAGGCGTGATGGTTGGCCTGCCATGTGTATTCATGGTGACAA
ATCCCAACCAGAGAGAGATTGGGTTTTAAATGAGTTTCGAACAGGAAAGTCTCCAATTCT
GGTTGCAACAGACGTGGCATCACGTGGTCTTGATGTTTCAGATATCAAATTTGTCATAAA
TTTTGATTTTCCAAATCAATGTGAAGATTACATTCATCGAATTGGGCGAACAGCAAGAGC
GAATCAAACTGGAACTGCATACACATTTTTCACACAAGCCAATGCTAAGCAGTGCAAAGA
TTTAATTGAAATCCTTAAGGAGGCAAAGCAGCAAATTAACCCAAGGTTGATGGAGTTGGC
TCAATCATCATGGGGAAATTTCGGTAAGAATCGCAGAGGTGGTGGCAGTAGTCGTGGAGG
TTATGGTTACGGAGGAGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGGACAACGTAGTAG
TGGTGGCTACAACAACAGTGGTGCCTATGGTGGAAAACCAGCTGGTGCATATGGGGGACA
GCAAACAAATGGTTACGCAAAACCACAACAAAATTTTGGTAACATGGCAGGTACACAGTT
TATGATGATGCCAGGAGGTCCAGTCCCAATGTAAAAGAAACATTCCTAACAATGTATTTT
AATCCACTAGTTTGTAATGCTTGTGTAAAGTTGAGCACAATCATACTTGGAAGAAAGGCT
ATTCTCTTCGTTTGCGCTGTAATATTTTCCAGTTACTACTACATAATACAGTCTGCTGCT
TTAACCGAAACCAAGCTTGGTTGTTGGTATGTAGCTTCAGCTTGTATATACCATGTTATT
AGACCACTTTTGTTCTTGATTTTAGCATTATTTATCAACCACGAATTTAGGCCAATTTTC
TTTATTACTAAGTTATCTAACCGAACTTGCTGATTTTAGGCGTTATGCCAGTGAGCTCGT
AGCGTACCATGTAAAATAAATTCTTTCAAAACAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[119-147] 9.737 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[138-341] 1.5E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[143-314] 6.2E-48 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[150-325] 32.031 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[191-479] 5.81E-76 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[271-279] . |
| CDD |
Helicase_C (IPR001650) - T[337-469] 1.99347E-42 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[353-500] 25.029 |
| Pfam |
Helicase_C (IPR001650) - T[353-461] 1.1E-29 |
| SMART |
Helicase_C (IPR001650) - T[380-461] 1.9E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX17_HUMAN | 62.715 % | 667 | 0 |
| DDX5_HUMAN | 58.033 % | 669 | 0 |
| DDX42_HUMAN | 41.63 % | 358 | 6.46E-113 |