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  1. Transcript 'KH2012:KH.C9.680.v1....'
  2. Region 'REG00000778'
  3. Transcript 'KH2012:KH.C14.414.v2...'
  4. Transcript 'Cisavi.CG.ENS81.R51....'
  5. Transcript 'KH2012:KH.C2.471.v2....'

Transcript Model

Transcript Id

KH2012:KH.C2.471.v2.A.nonSL6-1

Possible name(s)

DDX17; DDX42; DDX5

Location

KhC2 [80,477 / 82,627]

Sequences

Amino acid sequence

Length: 595

>KH.C2.471.v2.A.nonSL6-1
SIYIILTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSDRG
GKYDNSAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSNLK
KPVLFFHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFIL
PAMIHINAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQ
IRDLERGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIR
PDRQTLMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLM
RLMEEIMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTG
KSPILVATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANA
KQCKDLIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGGAG
GQRSSGGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM

Nucleotide sequence

Length: 2,150

>KH2012:KH.C2.471.v2.A.nonSL6-1
TTTCAATTTACATTATACTTACTGTAACAAGAATGCCCGGTTATGGTTCAAGAGATCGTG
GAGGTGACCGTGGTTACGGCAGCTATGGAGGGGGACGTAGTAATGGCTCTTATGGAGGAG
GAAACGATCGCTGGGGAGGAAGGGGAGGTGGGGGAGGCGGAAGAGGAAGATCGGATCGAG
GTGGGAAATATGACAACTCTGCTGGAAGCGGTCTCCGCAAGCCAAAGTGGGATTGTGAAA
AGTTAACTCCGTTTCAAAAAGAATTTTATCAAGAACATCCAAGTACTGCAGGAAGACCAG
TCCATCATGTTCAAGAATATTATCAGAAGCATGAGGTTACAGTTACTGGGTCAAACTTAA
AGAAACCTGTGCTTTTCTTTCATGAGGCAAGTTTTCCAGATTACATTAATAATCAGTTGC
TGTCCAATGGATTTAAGGCACCAACTCCTATACAAGCAATTGGTTGGCCACATGCACTTG
GCGGTCAAGATCTTGTTGGGATTGCTCAAACTGGATCTGGTAAAACACTCTCATTTATTT
TGCCAGCTATGATTCACATTAATGCTCAGCCATATCTTGAAAGAGGAGATGGTCCAATTG
CTCTTGTACTTTGCCCTACAAGGGAGTTGGCACAACAAGTTCAAGCAGTTGCAAATGATT
ATGGGCAGCTTTGCCACATTAGGAATACCTGTGTATATGGTGGGGCATCAAAAGCCCCTC
AAATTAGAGATTTGGAGAGAGGTTGTGAAATCGTGATCGCTACACCAGGTCGCCTTATTG
ATTTTCTAGAAGCCCGCAAGACAAACCTTCGCAGATGTACTTACTTGGTTCTTGATGAAG
CTGACAGAATGTTGGACATGGGTTTTGAACCACAAATACGAAAAATTATTGATCAGATTC
GTCCAGACAGACAAACACTGATGTGGAGTGCAACATGGCCAAAGGAAGTTCAAAAGCTCG
CAAATGATTTTCTCAGAGATAATGTTCATATCCAAATTGGATCTGTGAATATTTCTGCGA
ATCACAATATTCTACAAATCGTTGATGTTTGTACAGAAGATGAAAAATCCGAAAAGCTAA
TGAGATTGATGGAAGAAATAATGGGAGAGGCAGAGAATAAGACAATCATATTCACAGAAA
CTAAGAGAAAATGTGATATTCTCACTCGCAACATGAGGCGTGATGGTTGGCCTGCCATGT
GTATTCATGGTGACAAATCCCAACCAGAGAGAGATTGGGTTTTAAATGAGTTTCGAACAG
GAAAGTCTCCAATTCTGGTTGCAACAGACGTGGCATCACGTGGTCTTGATGTTTCAGATA
TCAAATTTGTCATAAATTTTGATTTTCCAAATCAATGTGAAGATTACATTCATCGAATTG
GGCGAACAGCAAGAGCGAATCAAACTGGAACTGCATACACATTTTTCACACAAGCCAATG
CTAAGCAGTGCAAAGATTTAATTGAAATCCTTAAGGAGGCAAAGCAGCAAATTAACCCAA
GGTTGATGGAGTTGGCTCAATCATCATGGGGAAATTTCGGTAAGAATCGCAGAGGTGGTG
GCAGTAGTCGTGGAGGTTATGGTTACGGAGGAGGCAGAAGCAATGGTTTTGGTGGAGCTG
GTGGACAACGTAGTAGTGGTGGCTACAACAACAGTGGTGCCTATGGTGGAAAACCAGCTG
GTGCATATGGGGGACAGCAAACAAATGGTTACGCAAAACCACAACAAAATTTTGGTAACA
TGGCAGGTACACAGTTTATGATGATGCCAGGAGGTCCAGTCCCAATGTAAAAGAAACATT
CCTAACAATGTATTTTAATCCACTAGTTTGTAATGCTTGTGTAAAGTTGAGCACAATCAT
ACTTGGAAGAAAGGCTATTCTCTTCGTTTGCGCTGTAATATTTTCCAGTTACTACTACAT
AATACAGTCTGCTGCTTTAACCGAAACCAAGCTTGGTTGTTGGTATGTAGCTTCAGCTTG
TATATACCATGTTATTAGACCACTTTTGTTCTTGATTTTAGCATTATTTATCAACCACGA
ATTTAGGCCAATTTTCTTTATTACTAAGTTATCTAACCGAACTTGCTGATTTTAGGCGTT
ATGCCAGTGAGCTCGTAGCGTACCATGTAAAATAAATTCTTTCAAAACAA

InterProScan

ProSiteProfiles
RNA_helicase_DEAD_Q_motif (IPR014014) - T[124-152] 9.737
SMART
Helicase_ATP-bd (IPR014001) - T[143-346] 1.5E-64
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[148-319] 6.3E-48
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[155-330] 32.031
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[196-484] 5.86E-76
ProSitePatterns
RNA-helicase_DEAD-box_CS (IPR000629) - T[276-284] .
CDD
Helicase_C (IPR001650) - T[342-474] 3.6155E-42
ProSiteProfiles
Helicase_C (IPR001650) - T[358-505] 25.029
Pfam
Helicase_C (IPR001650) - T[358-466] 1.1E-29
SMART
Helicase_C (IPR001650) - T[385-466] 1.9E-32

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX17_HUMAN 62.715 % 667 0
DDX5_HUMAN 57.869 % 669 0
DDX42_HUMAN 41.63 % 358 9.08E-113





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