- Transcript 'KH2012:KH.C2.471.v2....' >
- Transcript 'Phfumi.CG.MTP2014.S2...' >
- Clone 'cien28829' >
- Transcript 'KH2012:KH.C2.471.v2....' >
- Transcript 'KH2012:KH.C2.471.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.471.v2.A.nonSL7-1
Possible name(s)
DDX17; DDX42; DDX5
Gene model
Location
KhC2 [80,477 / 82,618]
Amino acid sequence
Length: 592
>KH.C2.471.v2.A.nonSL7-1
IILTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSDRGGKY
DNSAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSNLKKPV
LFFHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPAM
IHINAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRD
LERGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR
QTLMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLM
EEIMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKSP
ILVATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQC
KDLIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGGAGGQR
SSGGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM
Nucleotide sequence
Length: 2,141
>KH2012:KH.C2.471.v2.A.nonSL7-1
ACATTATACTTACTGTAACAAGAATGCCCGGTTATGGTTCAAGAGATCGTGGAGGTGACC
GTGGTTACGGCAGCTATGGAGGGGGACGTAGTAATGGCTCTTATGGAGGAGGAAACGATC
GCTGGGGAGGAAGGGGAGGTGGGGGAGGCGGAAGAGGAAGATCGGATCGAGGTGGGAAAT
ATGACAACTCTGCTGGAAGCGGTCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTTAACTC
CGTTTCAAAAAGAATTTTATCAAGAACATCCAAGTACTGCAGGAAGACCAGTCCATCATG
TTCAAGAATATTATCAGAAGCATGAGGTTACAGTTACTGGGTCAAACTTAAAGAAACCTG
TGCTTTTCTTTCATGAGGCAAGTTTTCCAGATTACATTAATAATCAGTTGCTGTCCAATG
GATTTAAGGCACCAACTCCTATACAAGCAATTGGTTGGCCACATGCACTTGGCGGTCAAG
ATCTTGTTGGGATTGCTCAAACTGGATCTGGTAAAACACTCTCATTTATTTTGCCAGCTA
TGATTCACATTAATGCTCAGCCATATCTTGAAAGAGGAGATGGTCCAATTGCTCTTGTAC
TTTGCCCTACAAGGGAGTTGGCACAACAAGTTCAAGCAGTTGCAAATGATTATGGGCAGC
TTTGCCACATTAGGAATACCTGTGTATATGGTGGGGCATCAAAAGCCCCTCAAATTAGAG
ATTTGGAGAGAGGTTGTGAAATCGTGATCGCTACACCAGGTCGCCTTATTGATTTTCTAG
AAGCCCGCAAGACAAACCTTCGCAGATGTACTTACTTGGTTCTTGATGAAGCTGACAGAA
TGTTGGACATGGGTTTTGAACCACAAATACGAAAAATTATTGATCAGATTCGTCCAGACA
GACAAACACTGATGTGGAGTGCAACATGGCCAAAGGAAGTTCAAAAGCTCGCAAATGATT
TTCTCAGAGATAATGTTCATATCCAAATTGGATCTGTGAATATTTCTGCGAATCACAATA
TTCTACAAATCGTTGATGTTTGTACAGAAGATGAAAAATCCGAAAAGCTAATGAGATTGA
TGGAAGAAATAATGGGAGAGGCAGAGAATAAGACAATCATATTCACAGAAACTAAGAGAA
AATGTGATATTCTCACTCGCAACATGAGGCGTGATGGTTGGCCTGCCATGTGTATTCATG
GTGACAAATCCCAACCAGAGAGAGATTGGGTTTTAAATGAGTTTCGAACAGGAAAGTCTC
CAATTCTGGTTGCAACAGACGTGGCATCACGTGGTCTTGATGTTTCAGATATCAAATTTG
TCATAAATTTTGATTTTCCAAATCAATGTGAAGATTACATTCATCGAATTGGGCGAACAG
CAAGAGCGAATCAAACTGGAACTGCATACACATTTTTCACACAAGCCAATGCTAAGCAGT
GCAAAGATTTAATTGAAATCCTTAAGGAGGCAAAGCAGCAAATTAACCCAAGGTTGATGG
AGTTGGCTCAATCATCATGGGGAAATTTCGGTAAGAATCGCAGAGGTGGTGGCAGTAGTC
GTGGAGGTTATGGTTACGGAGGAGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGGACAAC
GTAGTAGTGGTGGCTACAACAACAGTGGTGCCTATGGTGGAAAACCAGCTGGTGCATATG
GGGGACAGCAAACAAATGGTTACGCAAAACCACAACAAAATTTTGGTAACATGGCAGGTA
CACAGTTTATGATGATGCCAGGAGGTCCAGTCCCAATGTAAAAGAAACATTCCTAACAAT
GTATTTTAATCCACTAGTTTGTAATGCTTGTGTAAAGTTGAGCACAATCATACTTGGAAG
AAAGGCTATTCTCTTCGTTTGCGCTGTAATATTTTCCAGTTACTACTACATAATACAGTC
TGCTGCTTTAACCGAAACCAAGCTTGGTTGTTGGTATGTAGCTTCAGCTTGTATATACCA
TGTTATTAGACCACTTTTGTTCTTGATTTTAGCATTATTTATCAACCACGAATTTAGGCC
AATTTTCTTTATTACTAAGTTATCTAACCGAACTTGCTGATTTTAGGCGTTATGCCAGTG
AGCTCGTAGCGTACCATGTAAAATAAATTCTTTCAAAACAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[121-149] 9.737 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[140-343] 1.5E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[145-316] 6.3E-48 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[152-327] 32.031 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[193-481] 5.86E-76 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[273-281] . |
| CDD |
Helicase_C (IPR001650) - T[339-471] 2.94296E-42 |
| Pfam |
Helicase_C (IPR001650) - T[355-463] 1.1E-29 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[355-502] 25.029 |
| SMART |
Helicase_C (IPR001650) - T[382-463] 1.9E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX17_HUMAN | 62.715 % | 667 | 0 |
| DDX5_HUMAN | 58.033 % | 669 | 0 |
| DDX42_HUMAN | 41.63 % | 358 | 9.41E-113 |