- Transcript 'KH2012:KH.C2.471.v2....' >
- Clone 'ciad001h04' >
- Transcript 'Haaura.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C2.471.v2....' >
- Transcript 'KH2012:KH.C2.471.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.471.v2.A.nonSL9-1
Possible name(s)
DDX17; DDX42; DDX5
Gene model
Location
KhC2 [80,477 / 82,626]
Amino acid sequence
Length: 595
>KH.C2.471.v2.A.nonSL9-1
SIYIILTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSDRG
GKYDNSAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSNLK
KPVLFFHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFIL
PAMIHINAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQ
IRDLERGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIR
PDRQTLMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLM
RLMEEIMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTG
KSPILVATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANA
KQCKDLIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGGAG
GQRSSGGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM
Nucleotide sequence
Length: 2,149
>KH2012:KH.C2.471.v2.A.nonSL9-1
TTCAATTTACATTATACTTACTGTAACAAGAATGCCCGGTTATGGTTCAAGAGATCGTGG
AGGTGACCGTGGTTACGGCAGCTATGGAGGGGGACGTAGTAATGGCTCTTATGGAGGAGG
AAACGATCGCTGGGGAGGAAGGGGAGGTGGGGGAGGCGGAAGAGGAAGATCGGATCGAGG
TGGGAAATATGACAACTCTGCTGGAAGCGGTCTCCGCAAGCCAAAGTGGGATTGTGAAAA
GTTAACTCCGTTTCAAAAAGAATTTTATCAAGAACATCCAAGTACTGCAGGAAGACCAGT
CCATCATGTTCAAGAATATTATCAGAAGCATGAGGTTACAGTTACTGGGTCAAACTTAAA
GAAACCTGTGCTTTTCTTTCATGAGGCAAGTTTTCCAGATTACATTAATAATCAGTTGCT
GTCCAATGGATTTAAGGCACCAACTCCTATACAAGCAATTGGTTGGCCACATGCACTTGG
CGGTCAAGATCTTGTTGGGATTGCTCAAACTGGATCTGGTAAAACACTCTCATTTATTTT
GCCAGCTATGATTCACATTAATGCTCAGCCATATCTTGAAAGAGGAGATGGTCCAATTGC
TCTTGTACTTTGCCCTACAAGGGAGTTGGCACAACAAGTTCAAGCAGTTGCAAATGATTA
TGGGCAGCTTTGCCACATTAGGAATACCTGTGTATATGGTGGGGCATCAAAAGCCCCTCA
AATTAGAGATTTGGAGAGAGGTTGTGAAATCGTGATCGCTACACCAGGTCGCCTTATTGA
TTTTCTAGAAGCCCGCAAGACAAACCTTCGCAGATGTACTTACTTGGTTCTTGATGAAGC
TGACAGAATGTTGGACATGGGTTTTGAACCACAAATACGAAAAATTATTGATCAGATTCG
TCCAGACAGACAAACACTGATGTGGAGTGCAACATGGCCAAAGGAAGTTCAAAAGCTCGC
AAATGATTTTCTCAGAGATAATGTTCATATCCAAATTGGATCTGTGAATATTTCTGCGAA
TCACAATATTCTACAAATCGTTGATGTTTGTACAGAAGATGAAAAATCCGAAAAGCTAAT
GAGATTGATGGAAGAAATAATGGGAGAGGCAGAGAATAAGACAATCATATTCACAGAAAC
TAAGAGAAAATGTGATATTCTCACTCGCAACATGAGGCGTGATGGTTGGCCTGCCATGTG
TATTCATGGTGACAAATCCCAACCAGAGAGAGATTGGGTTTTAAATGAGTTTCGAACAGG
AAAGTCTCCAATTCTGGTTGCAACAGACGTGGCATCACGTGGTCTTGATGTTTCAGATAT
CAAATTTGTCATAAATTTTGATTTTCCAAATCAATGTGAAGATTACATTCATCGAATTGG
GCGAACAGCAAGAGCGAATCAAACTGGAACTGCATACACATTTTTCACACAAGCCAATGC
TAAGCAGTGCAAAGATTTAATTGAAATCCTTAAGGAGGCAAAGCAGCAAATTAACCCAAG
GTTGATGGAGTTGGCTCAATCATCATGGGGAAATTTCGGTAAGAATCGCAGAGGTGGTGG
CAGTAGTCGTGGAGGTTATGGTTACGGAGGAGGCAGAAGCAATGGTTTTGGTGGAGCTGG
TGGACAACGTAGTAGTGGTGGCTACAACAACAGTGGTGCCTATGGTGGAAAACCAGCTGG
TGCATATGGGGGACAGCAAACAAATGGTTACGCAAAACCACAACAAAATTTTGGTAACAT
GGCAGGTACACAGTTTATGATGATGCCAGGAGGTCCAGTCCCAATGTAAAAGAAACATTC
CTAACAATGTATTTTAATCCACTAGTTTGTAATGCTTGTGTAAAGTTGAGCACAATCATA
CTTGGAAGAAAGGCTATTCTCTTCGTTTGCGCTGTAATATTTTCCAGTTACTACTACATA
ATACAGTCTGCTGCTTTAACCGAAACCAAGCTTGGTTGTTGGTATGTAGCTTCAGCTTGT
ATATACCATGTTATTAGACCACTTTTGTTCTTGATTTTAGCATTATTTATCAACCACGAA
TTTAGGCCAATTTTCTTTATTACTAAGTTATCTAACCGAACTTGCTGATTTTAGGCGTTA
TGCCAGTGAGCTCGTAGCGTACCATGTAAAATAAATTCTTTCAAAACAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[124-152] 9.737 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[143-346] 1.5E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[148-319] 6.3E-48 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[155-330] 32.031 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[196-484] 5.86E-76 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[276-284] . |
| CDD |
Helicase_C (IPR001650) - T[342-474] 3.6155E-42 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[358-505] 25.029 |
| Pfam |
Helicase_C (IPR001650) - T[358-466] 1.1E-29 |
| SMART |
Helicase_C (IPR001650) - T[385-466] 1.9E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX17_HUMAN | 62.715 % | 667 | 0 |
| DDX5_HUMAN | 57.869 % | 669 | 0 |
| DDX42_HUMAN | 41.63 % | 358 | 9.08E-113 |