- Region 'REG00001501' >
- Transcript 'KH2012:KH.C8.892.v1....' >
- Clone 'citb097d16' >
- Transcript 'KH2012:KH.S514.7.v1....' >
- Transcript 'KH2012:KH.C2.471.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.471.v2.A.SL1-1
Possible name(s)
DDX17; DDX42; DDX5
Gene model
Location
KhC2 [80,477 / 82,657]
Amino acid sequence
Length: 605
>KH.C2.471.v2.A.SL1-1
LHGFESKLYFSIYIILTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGG
GGGRGRSDRGGKYDNSAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKH
EVTVTGSNLKKPVLFFHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQT
GSGKTLSFILPAMIHINAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTC
VYGGASKAPQIRDLERGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEP
QIRKIIDQIRPDRQTLMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVC
TEDEKSEKLMRLMEEIMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPER
DWVLNEFRTGKSPILVATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGT
AYTFFTQANAKQCKDLIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGG
GRSNGFGGAGGQRSSGGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPG
GPVPM
Nucleotide sequence
Length: 2,180
>KH2012:KH.C2.471.v2.A.SL1-1
ATTTGCACGGTTTCGAATCCAAATTATATTTTTCAATTTACATTATACTTACTGTAACAA
GAATGCCCGGTTATGGTTCAAGAGATCGTGGAGGTGACCGTGGTTACGGCAGCTATGGAG
GGGGACGTAGTAATGGCTCTTATGGAGGAGGAAACGATCGCTGGGGAGGAAGGGGAGGTG
GGGGAGGCGGAAGAGGAAGATCGGATCGAGGTGGGAAATATGACAACTCTGCTGGAAGCG
GTCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTTAACTCCGTTTCAAAAAGAATTTTATC
AAGAACATCCAAGTACTGCAGGAAGACCAGTCCATCATGTTCAAGAATATTATCAGAAGC
ATGAGGTTACAGTTACTGGGTCAAACTTAAAGAAACCTGTGCTTTTCTTTCATGAGGCAA
GTTTTCCAGATTACATTAATAATCAGTTGCTGTCCAATGGATTTAAGGCACCAACTCCTA
TACAAGCAATTGGTTGGCCACATGCACTTGGCGGTCAAGATCTTGTTGGGATTGCTCAAA
CTGGATCTGGTAAAACACTCTCATTTATTTTGCCAGCTATGATTCACATTAATGCTCAGC
CATATCTTGAAAGAGGAGATGGTCCAATTGCTCTTGTACTTTGCCCTACAAGGGAGTTGG
CACAACAAGTTCAAGCAGTTGCAAATGATTATGGGCAGCTTTGCCACATTAGGAATACCT
GTGTATATGGTGGGGCATCAAAAGCCCCTCAAATTAGAGATTTGGAGAGAGGTTGTGAAA
TCGTGATCGCTACACCAGGTCGCCTTATTGATTTTCTAGAAGCCCGCAAGACAAACCTTC
GCAGATGTACTTACTTGGTTCTTGATGAAGCTGACAGAATGTTGGACATGGGTTTTGAAC
CACAAATACGAAAAATTATTGATCAGATTCGTCCAGACAGACAAACACTGATGTGGAGTG
CAACATGGCCAAAGGAAGTTCAAAAGCTCGCAAATGATTTTCTCAGAGATAATGTTCATA
TCCAAATTGGATCTGTGAATATTTCTGCGAATCACAATATTCTACAAATCGTTGATGTTT
GTACAGAAGATGAAAAATCCGAAAAGCTAATGAGATTGATGGAAGAAATAATGGGAGAGG
CAGAGAATAAGACAATCATATTCACAGAAACTAAGAGAAAATGTGATATTCTCACTCGCA
ACATGAGGCGTGATGGTTGGCCTGCCATGTGTATTCATGGTGACAAATCCCAACCAGAGA
GAGATTGGGTTTTAAATGAGTTTCGAACAGGAAAGTCTCCAATTCTGGTTGCAACAGACG
TGGCATCACGTGGTCTTGATGTTTCAGATATCAAATTTGTCATAAATTTTGATTTTCCAA
ATCAATGTGAAGATTACATTCATCGAATTGGGCGAACAGCAAGAGCGAATCAAACTGGAA
CTGCATACACATTTTTCACACAAGCCAATGCTAAGCAGTGCAAAGATTTAATTGAAATCC
TTAAGGAGGCAAAGCAGCAAATTAACCCAAGGTTGATGGAGTTGGCTCAATCATCATGGG
GAAATTTCGGTAAGAATCGCAGAGGTGGTGGCAGTAGTCGTGGAGGTTATGGTTACGGAG
GAGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGGACAACGTAGTAGTGGTGGCTACAACA
ACAGTGGTGCCTATGGTGGAAAACCAGCTGGTGCATATGGGGGACAGCAAACAAATGGTT
ACGCAAAACCACAACAAAATTTTGGTAACATGGCAGGTACACAGTTTATGATGATGCCAG
GAGGTCCAGTCCCAATGTAAAAGAAACATTCCTAACAATGTATTTTAATCCACTAGTTTG
TAATGCTTGTGTAAAGTTGAGCACAATCATACTTGGAAGAAAGGCTATTCTCTTCGTTTG
CGCTGTAATATTTTCCAGTTACTACTACATAATACAGTCTGCTGCTTTAACCGAAACCAA
GCTTGGTTGTTGGTATGTAGCTTCAGCTTGTATATACCATGTTATTAGACCACTTTTGTT
CTTGATTTTAGCATTATTTATCAACCACGAATTTAGGCCAATTTTCTTTATTACTAAGTT
ATCTAACCGAACTTGCTGATTTTAGGCGTTATGCCAGTGAGCTCGTAGCGTACCATGTAA
AATAAATTCTTTCAAAACAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[134-162] 9.737 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[153-356] 1.5E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[158-329] 6.6E-48 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[165-340] 32.031 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[206-494] 6.32E-76 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[286-294] . |
| CDD |
Helicase_C (IPR001650) - T[352-484] 4.01392E-42 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[368-515] 25.029 |
| Pfam |
Helicase_C (IPR001650) - T[368-476] 1.2E-29 |
| SMART |
Helicase_C (IPR001650) - T[395-476] 1.9E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX17_HUMAN | 62.715 % | 667 | 0 |
| DDX5_HUMAN | 57.869 % | 669 | 0 |
| DDX42_HUMAN | 41.63 % | 358 | 1.55E-112 |