- Transcript 'KH2012:KH.C2.471.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.471.v2.A.SL16-1
Possible name(s)
DDX17; DDX42; DDX5
Gene model
Location
KhC2 [80,477 / 82,596]
Amino acid sequence
Length: 585
>KH.C2.471.v2.A.SL16-1
MPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSDRGGKYDNSAGSG
LRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSNLKKPVLFFHEAS
FPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPAMIHINAQP
YLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRDLERGCEI
VIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSA
TWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLMEEIMGEA
ENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKSPILVATDV
ASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQCKDLIEIL
KEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGGAGGQRSSGGYNN
SGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM
Nucleotide sequence
Length: 2,119
>KH2012:KH.C2.471.v2.A.SL16-1
AATGCCCGGTTATGGTTCAAGAGATCGTGGAGGTGACCGTGGTTACGGCAGCTATGGAGG
GGGACGTAGTAATGGCTCTTATGGAGGAGGAAACGATCGCTGGGGAGGAAGGGGAGGTGG
GGGAGGCGGAAGAGGAAGATCGGATCGAGGTGGGAAATATGACAACTCTGCTGGAAGCGG
TCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTTAACTCCGTTTCAAAAAGAATTTTATCA
AGAACATCCAAGTACTGCAGGAAGACCAGTCCATCATGTTCAAGAATATTATCAGAAGCA
TGAGGTTACAGTTACTGGGTCAAACTTAAAGAAACCTGTGCTTTTCTTTCATGAGGCAAG
TTTTCCAGATTACATTAATAATCAGTTGCTGTCCAATGGATTTAAGGCACCAACTCCTAT
ACAAGCAATTGGTTGGCCACATGCACTTGGCGGTCAAGATCTTGTTGGGATTGCTCAAAC
TGGATCTGGTAAAACACTCTCATTTATTTTGCCAGCTATGATTCACATTAATGCTCAGCC
ATATCTTGAAAGAGGAGATGGTCCAATTGCTCTTGTACTTTGCCCTACAAGGGAGTTGGC
ACAACAAGTTCAAGCAGTTGCAAATGATTATGGGCAGCTTTGCCACATTAGGAATACCTG
TGTATATGGTGGGGCATCAAAAGCCCCTCAAATTAGAGATTTGGAGAGAGGTTGTGAAAT
CGTGATCGCTACACCAGGTCGCCTTATTGATTTTCTAGAAGCCCGCAAGACAAACCTTCG
CAGATGTACTTACTTGGTTCTTGATGAAGCTGACAGAATGTTGGACATGGGTTTTGAACC
ACAAATACGAAAAATTATTGATCAGATTCGTCCAGACAGACAAACACTGATGTGGAGTGC
AACATGGCCAAAGGAAGTTCAAAAGCTCGCAAATGATTTTCTCAGAGATAATGTTCATAT
CCAAATTGGATCTGTGAATATTTCTGCGAATCACAATATTCTACAAATCGTTGATGTTTG
TACAGAAGATGAAAAATCCGAAAAGCTAATGAGATTGATGGAAGAAATAATGGGAGAGGC
AGAGAATAAGACAATCATATTCACAGAAACTAAGAGAAAATGTGATATTCTCACTCGCAA
CATGAGGCGTGATGGTTGGCCTGCCATGTGTATTCATGGTGACAAATCCCAACCAGAGAG
AGATTGGGTTTTAAATGAGTTTCGAACAGGAAAGTCTCCAATTCTGGTTGCAACAGACGT
GGCATCACGTGGTCTTGATGTTTCAGATATCAAATTTGTCATAAATTTTGATTTTCCAAA
TCAATGTGAAGATTACATTCATCGAATTGGGCGAACAGCAAGAGCGAATCAAACTGGAAC
TGCATACACATTTTTCACACAAGCCAATGCTAAGCAGTGCAAAGATTTAATTGAAATCCT
TAAGGAGGCAAAGCAGCAAATTAACCCAAGGTTGATGGAGTTGGCTCAATCATCATGGGG
AAATTTCGGTAAGAATCGCAGAGGTGGTGGCAGTAGTCGTGGAGGTTATGGTTACGGAGG
AGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGGACAACGTAGTAGTGGTGGCTACAACAA
CAGTGGTGCCTATGGTGGAAAACCAGCTGGTGCATATGGGGGACAGCAAACAAATGGTTA
CGCAAAACCACAACAAAATTTTGGTAACATGGCAGGTACACAGTTTATGATGATGCCAGG
AGGTCCAGTCCCAATGTAAAAGAAACATTCCTAACAATGTATTTTAATCCACTAGTTTGT
AATGCTTGTGTAAAGTTGAGCACAATCATACTTGGAAGAAAGGCTATTCTCTTCGTTTGC
GCTGTAATATTTTCCAGTTACTACTACATAATACAGTCTGCTGCTTTAACCGAAACCAAG
CTTGGTTGTTGGTATGTAGCTTCAGCTTGTATATACCATGTTATTAGACCACTTTTGTTC
TTGATTTTAGCATTATTTATCAACCACGAATTTAGGCCAATTTTCTTTATTACTAAGTTA
TCTAACCGAACTTGCTGATTTTAGGCGTTATGCCAGTGAGCTCGTAGCGTACCATGTAAA
ATAAATTCTTTCAAAACAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[114-142] 9.737 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[133-336] 1.5E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[138-309] 6.1E-48 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[145-320] 32.031 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[186-474] 5.35E-76 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[266-274] . |
| CDD |
Helicase_C (IPR001650) - T[332-464] 1.68443E-42 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[348-495] 25.029 |
| Pfam |
Helicase_C (IPR001650) - T[348-456] 1.1E-29 |
| SMART |
Helicase_C (IPR001650) - T[375-456] 1.9E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX17_HUMAN | 62.715 % | 667 | 0 |
| DDX5_HUMAN | 58.033 % | 669 | 0 |
| DDX42_HUMAN | 40.358 % | 358 | 3.92E-113 |