- Clone 'cima820628' >
- Transcript 'KH2012:KH.C2.471.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.471.v2.A.SL3-1
Possible name(s)
DDX17; DDX42; DDX5
Gene model
Location
KhC2 [80,477 / 82,664]
Amino acid sequence
Length: 608
>KH.C2.471.v2.A.SL3-1
LEDLHGFESKLYFSIYIILTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGR
GGGGGGRGRSDRGGKYDNSAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYY
QKHEVTVTGSNLKKPVLFFHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGI
AQTGSGKTLSFILPAMIHINAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIR
NTCVYGGASKAPQIRDLERGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMG
FEPQIRKIIDQIRPDRQTLMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIV
DVCTEDEKSEKLMRLMEEIMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQ
PERDWVLNEFRTGKSPILVATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQ
TGTAYTFFTQANAKQCKDLIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYG
YGGGRSNGFGGAGGQRSSGGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMM
MPGGPVPM
Nucleotide sequence
Length: 2,187
>KH2012:KH.C2.471.v2.A.SL3-1
CTGGAAGATTTGCACGGTTTCGAATCCAAATTATATTTTTCAATTTACATTATACTTACT
GTAACAAGAATGCCCGGTTATGGTTCAAGAGATCGTGGAGGTGACCGTGGTTACGGCAGC
TATGGAGGGGGACGTAGTAATGGCTCTTATGGAGGAGGAAACGATCGCTGGGGAGGAAGG
GGAGGTGGGGGAGGCGGAAGAGGAAGATCGGATCGAGGTGGGAAATATGACAACTCTGCT
GGAAGCGGTCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTTAACTCCGTTTCAAAAAGAA
TTTTATCAAGAACATCCAAGTACTGCAGGAAGACCAGTCCATCATGTTCAAGAATATTAT
CAGAAGCATGAGGTTACAGTTACTGGGTCAAACTTAAAGAAACCTGTGCTTTTCTTTCAT
GAGGCAAGTTTTCCAGATTACATTAATAATCAGTTGCTGTCCAATGGATTTAAGGCACCA
ACTCCTATACAAGCAATTGGTTGGCCACATGCACTTGGCGGTCAAGATCTTGTTGGGATT
GCTCAAACTGGATCTGGTAAAACACTCTCATTTATTTTGCCAGCTATGATTCACATTAAT
GCTCAGCCATATCTTGAAAGAGGAGATGGTCCAATTGCTCTTGTACTTTGCCCTACAAGG
GAGTTGGCACAACAAGTTCAAGCAGTTGCAAATGATTATGGGCAGCTTTGCCACATTAGG
AATACCTGTGTATATGGTGGGGCATCAAAAGCCCCTCAAATTAGAGATTTGGAGAGAGGT
TGTGAAATCGTGATCGCTACACCAGGTCGCCTTATTGATTTTCTAGAAGCCCGCAAGACA
AACCTTCGCAGATGTACTTACTTGGTTCTTGATGAAGCTGACAGAATGTTGGACATGGGT
TTTGAACCACAAATACGAAAAATTATTGATCAGATTCGTCCAGACAGACAAACACTGATG
TGGAGTGCAACATGGCCAAAGGAAGTTCAAAAGCTCGCAAATGATTTTCTCAGAGATAAT
GTTCATATCCAAATTGGATCTGTGAATATTTCTGCGAATCACAATATTCTACAAATCGTT
GATGTTTGTACAGAAGATGAAAAATCCGAAAAGCTAATGAGATTGATGGAAGAAATAATG
GGAGAGGCAGAGAATAAGACAATCATATTCACAGAAACTAAGAGAAAATGTGATATTCTC
ACTCGCAACATGAGGCGTGATGGTTGGCCTGCCATGTGTATTCATGGTGACAAATCCCAA
CCAGAGAGAGATTGGGTTTTAAATGAGTTTCGAACAGGAAAGTCTCCAATTCTGGTTGCA
ACAGACGTGGCATCACGTGGTCTTGATGTTTCAGATATCAAATTTGTCATAAATTTTGAT
TTTCCAAATCAATGTGAAGATTACATTCATCGAATTGGGCGAACAGCAAGAGCGAATCAA
ACTGGAACTGCATACACATTTTTCACACAAGCCAATGCTAAGCAGTGCAAAGATTTAATT
GAAATCCTTAAGGAGGCAAAGCAGCAAATTAACCCAAGGTTGATGGAGTTGGCTCAATCA
TCATGGGGAAATTTCGGTAAGAATCGCAGAGGTGGTGGCAGTAGTCGTGGAGGTTATGGT
TACGGAGGAGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGGACAACGTAGTAGTGGTGGC
TACAACAACAGTGGTGCCTATGGTGGAAAACCAGCTGGTGCATATGGGGGACAGCAAACA
AATGGTTACGCAAAACCACAACAAAATTTTGGTAACATGGCAGGTACACAGTTTATGATG
ATGCCAGGAGGTCCAGTCCCAATGTAAAAGAAACATTCCTAACAATGTATTTTAATCCAC
TAGTTTGTAATGCTTGTGTAAAGTTGAGCACAATCATACTTGGAAGAAAGGCTATTCTCT
TCGTTTGCGCTGTAATATTTTCCAGTTACTACTACATAATACAGTCTGCTGCTTTAACCG
AAACCAAGCTTGGTTGTTGGTATGTAGCTTCAGCTTGTATATACCATGTTATTAGACCAC
TTTTGTTCTTGATTTTAGCATTATTTATCAACCACGAATTTAGGCCAATTTTCTTTATTA
CTAAGTTATCTAACCGAACTTGCTGATTTTAGGCGTTATGCCAGTGAGCTCGTAGCGTAC
CATGTAAAATAAATTCTTTCAAAACAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[137-165] 9.737 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[156-359] 1.5E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[161-332] 6.6E-48 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[168-343] 32.031 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[209-497] 6.32E-76 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[289-297] . |
| CDD |
Helicase_C (IPR001650) - T[355-487] 4.13788E-42 |
| Pfam |
Helicase_C (IPR001650) - T[371-479] 1.2E-29 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[371-518] 25.029 |
| SMART |
Helicase_C (IPR001650) - T[398-479] 1.9E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX17_HUMAN | 62.715 % | 667 | 0 |
| DDX5_HUMAN | 57.869 % | 669 | 0 |
| DDX42_HUMAN | 41.63 % | 358 | 1.75E-112 |