Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C2.48.v1.A.ND1-1

Possible name(s)

KH.C2.48

Gene model

KH2012:KH.C2.48

Location

KhC2 [4,251,501 / 4,254,405]

Sequences

Amino acid sequence

Length: 343

>KH.C2.48.v1.A.ND1-1
KKTEKMGFVKLAAPGRTSRLFGLFIVLYLMLVATSTAGASARGHSGAPETQSFRSTVSNT
ETKSCFDIMKSCRHHKECREALVKLKTKCAVKAGSCNTNMRNLPTCAKIMDLLTNARFFN
PDQKCSCNKKRGHCAAIHKKIYENPCFGSVRFLRSRNMLPKLDDIEKPNTVQSNLAAVSR
ESSDEVFEAFMTYNDYAADESVQLMTSPTPGTSQSESTTVVSVSGDVKNDESNDVIIPQT
ESGSINYVATKSETYVEDPFDQPTNTLPHNDAVLLHVVAIATGILLIVMVIAGAAMLFFV
RYVYNQNITIEKYPKRFPLFYNLILHFSMKRKECKNARKETMT

Nucleotide sequence

Length: 1,602

>KH2012:KH.C2.48.v1.A.ND1-1
GGTTTTAAGTAAATTTGAAACAGTTAATTTCTATTTCAGAGACGTAAATAAAAACGGCTA
TCTATCAACATAGACCTTTCGGAAGTCCATTGTTACATCAACGCTCCGTCATAATCCCGT
GGGACCGCAGTGGCCATCTCCGCGGGGTTTCTAAGAATTTGTTTCTGAGTTTTGTCTTTC
TTTCGCAGCTGTCTGTAGCCAAACCGCCAGACTAGGAATTTGAGACGAAACGACTACCAC
TGTGACGAATAAGTTAAAAAAAGACAGAGAAGATGGGTTTTGTAAAACTAGCAGCGCCAG
GAAGAACAAGCAGACTTTTTGGACTTTTTATCGTTCTTTATTTGATGCTGGTAGCGACAT
CCACTGCAGGAGCATCCGCAAGAGGGCATAGTGGAGCTCCGGAAACGCAAAGCTTCCGCT
CGACAGTGAGCAACACTGAAACGAAATCCTGCTTCGATATTATGAAGTCCTGCCGCCACC
ATAAAGAATGCAGAGAAGCACTCGTGAAACTAAAAACTAAATGCGCGGTGAAAGCGGGCA
GCTGCAACACAAACATGCGTAATTTACCAACATGCGCCAAAATCATGGATTTGCTAACTA
ATGCTCGATTCTTCAACCCTGATCAGAAGTGCTCGTGTAATAAGAAACGAGGTCACTGCG
CTGCCATACACAAGAAAATCTACGAGAACCCTTGTTTCGGTTCCGTGCGATTTCTTCGAT
CCAGGAACATGTTGCCTAAACTCGACGATATTGAAAAACCGAATACTGTCCAATCAAACC
TAGCAGCAGTGTCACGTGAATCAAGCGATGAGGTATTCGAGGCCTTTATGACGTACAATG
ACTACGCCGCTGACGAAAGCGTCCAGTTGATGACGTCGCCAACTCCGGGAACGTCACAGT
CCGAATCCACAACCGTCGTGTCCGTTTCCGGTGACGTCAAGAACGACGAAAGCAATGACG
TCATAATCCCACAGACCGAAAGCGGGAGCATCAATTATGTCGCAACAAAGAGCGAGACTT
ACGTGGAAGATCCGTTCGACCAACCAACCAACACCCTACCACACAATGATGCTGTGCTGT
TACATGTGGTGGCGATCGCGACCGGCATTCTACTGATAGTAATGGTGATAGCAGGAGCTG
CGATGCTTTTCTTTGTAAGGTATGTATACAACCAGAATATAACAATTGAAAAATATCCCA
AAAGGTTTCCTTTATTTTATAACTTAATTTTACATTTCAGCATGAAGAGAAAGGAATGCA
AAAACGCGAGAAAGGAAACGATGACGTGACGATGACGTCAACATCTGTGATCATTTCCTT
ATAAATGTTGTTGACAGCGTCACCGCATACGTCACGTTACCTAGCGCCAAGCGTGACAAT
CGAAGATCTTTTCACATCACTGTTTGTTCATGCGGCTCGTAATTATGACGTCATAATTTG
AATCCGGCGCCGTTCGACCGTTCGTTTATTTTCGTTTTCTTGTTGTTGCCCGAACTCGGC
CTATTATTTTTTTACCTGAGATTTTATTTATTTTCTGTTTTCTTATATCGCTCCCATGTT
CGAACCGATGTTTTTATCGCCATTAAATCATTTCAAAAATTA

InterProScan

SUPERFAMILY	GDNF_alpha (IPR037193) - T[63-149] 3.92E-6
Pfam	GDNF/GAS1 (IPR016017) - T[65-146] 8.8E-9
SMART	GDNF/GAS1 (IPR016017) - T[65-146] 8.3E-10

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value