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TRANSCRIPT CARD

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  1. Region 'REG00000405' > 
  2. Transcript 'KH2012:KH.L35.11.v1....' > 
  3. Region 'REG00000079' > 
  4. Clone 'AHC0AAA241YD08' > 
  5. Transcript 'KH2012:KH.C2.593.v1....'

Transcript Model

Transcript Id

KH2012:KH.C2.593.v1.A.SL1-1

Possible name(s)

H1F0; H1FX; HIST1H1T

Gene model

KH2012:KH.C2.593

Location

KhC2 [7,622,445 / 7,623,389]

Sequences

Amino acid sequence

Length: 197

>KH.C2.593.v1.A.SL1-1
PKSTSSKMVAKVDTDKKKVAQKKEHPTYAEMIVAAIKALKDRKGASRQAIVKYIKANYKV
GDNAATQCKHSLKRLVTSEKIVNTVGVGASGRFKVPQAAVPTTTKKVAKKTEKEAKPAQK
KTTAAKKKTAAKKSPKKQAKKSPAKKPAQKKAAAKPKVKTTKSPKKPTKKPAAKKSPAKK
AAKKPAAKKSAKKTTKK

Nucleotide sequence

Length: 944

>KH2012:KH.C2.593.v1.A.SL1-1
CTATCACATTACTTGTGCTATTCTTTCGTTAACCGAAATCTACATCAAGCAAAATGGTCG
CAAAAGTTGACACCGATAAGAAGAAGGTCGCCCAAAAGAAGGAGCACCCAACATATGCCG
AAATGATCGTGGCCGCTATCAAAGCACTCAAGGATAGAAAAGGCGCATCTCGGCAAGCTA
TTGTAAAGTACATCAAGGCCAACTACAAAGTGGGCGACAATGCAGCTACTCAATGCAAGC
ACAGTCTTAAGAGATTGGTGACTTCTGAAAAGATCGTAAATACCGTTGGTGTTGGTGCAT
CTGGTCGATTTAAGGTCCCACAAGCAGCTGTCCCAACAACTACAAAGAAAGTGGCAAAGA
AGACCGAAAAGGAGGCCAAACCAGCGCAAAAGAAAACCACCGCTGCCAAGAAGAAGACAG
CTGCTAAAAAGTCACCTAAAAAGCAGGCCAAAAAATCGCCAGCAAAGAAGCCCGCACAAA
AGAAAGCAGCCGCCAAACCAAAAGTCAAAACCACAAAATCTCCCAAAAAGCCAACCAAGA
AGCCTGCTGCCAAGAAATCCCCGGCCAAGAAGGCGGCTAAGAAGCCAGCAGCAAAGAAAT
CAGCGAAGAAAACCACCAAAAAATAAACATTAGTTACATCGCTATCGATTTATTCTCATC
GCTGCCGCCCGTGAGGCACCCCTTGTTTTAGATGAACACAAATTCGTGTATATTGCAATA
TATTATTGCGCCCCACAAGCGAAACCCAATGGGAGTTTAAAATCCGTTTTTCCTATTTTT
ATGTTTTTTTTTATTAAATAAATCTTTCATTCAAACACTCAACCTACTCCATTGGGGGGT
AAGGCGGCCAGGTGCTGTACAATGTACATACCAGCACGGCAGATTTCTTTTTATTATATT
TGTTTTATAGTCGCGCGTTCCTGCGATAATGATCGAAATAACAA

InterProScan

PRINTS
Histone_H5 (IPR005819) - T[11-32] 6.4E-27 - T[38-55] 6.4E-27 - T[58-76] 6.4E-27 - T[79-103] 6.4E-27 - T[116-130] 6.4E-27 - T[153-170] 6.4E-27 - T[175-194] 6.4E-27
Gene3D
WH-like_DNA-bd_sf (IPR036388) - T[19-120] 2.1E-30
SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[22-109] 5.22E-21
SMART
Histone_H1/H5_H15 (IPR005818) - T[22-87] 5.3E-24
ProSiteProfiles
Histone_H1/H5_H15 (IPR005818) - T[24-97] 28.157
Pfam
Histone_H1/H5_H15 (IPR005818) - T[25-95] 4.9E-27

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
H10_HUMAN 56.41 % 96.7 3.34E-25