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- Transcript 'KH2012:KH.C2.65.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C2.65.v1.A.SL1-2
Possible name(s)
LRRC74A; LRRC74B; NLRC3
Gene model
Location
KhC2 [2,619,209 / 2,623,495]
Amino acid sequence
Length: 496
>KH.C2.65.v1.A.SL1-2
LPSICVLNYLEMSPLNEFSNETEKESKETDNLEDTPVNEVKVSETAIVDDPLPIVQLTDE
EAYDTDLEIEDEGRTAYRSFTAVDIYFKSCEQLGVVPASYFVTHLQHEVMNMSHHGLGPN
GTKAIAAPLVINTSILELNIEDNWITAEGMRDIADMLMENCYISILNISHNKLGSEGARY
VGEMLQENTTLRTLNISRNDFKDSDGQYFAEALRQNFRLKELDISGNEFCELGGEWMGQA
IAANEAIETLNLSWNHLRLKGALAVCAGMKSNITVKTLDLSWNGFADEGAMAMGEALKTN
NTLVWLDLSFNRISDKGLTMLAKGLEVNDTLRTLRIGDNPFGEEGALLLINAIFKNEKSA
IEDLDLKSVRVNREFLELAEKLRGRTSSLGGSRTSFTFTVKSSDASTEQREQKISREEAD
PMMVMQKFLEDKRLRLVDLFRNFDKDLSWKISPAEFKKGITDAEIPFTKLQLKNLMNSLD
IDTDGQVNYRTLVKEE
Nucleotide sequence
Length: 1,548
>KH2012:KH.C2.65.v1.A.SL1-2
GGTTTAGCTTCCTAGTATTTGTGTTTTAAATTACCTGGAAATGTCGCCGTTAAATGAATT
TTCAAATGAAACCGAAAAAGAAAGTAAAGAAACCGATAACTTAGAGGACACCCCAGTTAA
CGAGGTTAAGGTGTCCGAAACTGCCATAGTGGATGATCCTTTACCAATTGTTCAATTAAC
AGACGAAGAAGCGTATGATACAGATTTAGAAATAGAAGATGAAGGTAGAACCGCATATCG
CAGTTTTACAGCTGTTGACATTTACTTTAAATCCTGTGAGCAACTCGGTGTCGTGCCTGC
TTCTTATTTCGTAACCCACCTTCAACATGAAGTTATGAATATGAGCCATCATGGATTGGG
GCCAAATGGAACAAAAGCCATAGCTGCGCCCCTTGTGATAAACACTTCAATTTTGGAATT
AAACATCGAGGATAATTGGATAACAGCCGAGGGTATGAGAGATATAGCGGATATGTTAAT
GGAAAACTGCTACATTTCTATTCTGAACATATCTCACAACAAACTTGGATCCGAAGGCGC
CCGCTACGTTGGTGAGATGCTGCAGGAGAACACTACTTTGCGGACGCTTAATATTTCCCG
TAATGATTTTAAAGATTCTGACGGCCAGTACTTCGCAGAGGCGTTGCGTCAAAACTTCAG
GTTAAAAGAGCTTGACATCAGTGGAAACGAGTTTTGTGAATTGGGCGGTGAATGGATGGG
TCAAGCTATTGCTGCTAACGAAGCGATTGAAACACTTAATCTCAGCTGGAATCACCTGAG
ATTAAAGGGAGCACTTGCAGTGTGTGCTGGTATGAAATCAAACATCACTGTGAAAACTCT
CGATCTATCATGGAATGGTTTTGCCGATGAAGGAGCTATGGCGATGGGAGAGGCGTTGAA
AACCAACAACACATTAGTTTGGCTCGACCTCAGCTTTAACAGGATTTCAGATAAAGGTTT
AACCATGTTGGCAAAGGGTCTTGAGGTAAACGACACTCTACGAACGTTAAGGATCGGCGA
CAACCCATTCGGTGAGGAAGGAGCACTTTTGCTTATAAATGCAATCTTTAAAAACGAAAA
ATCGGCGATTGAAGATTTGGATTTGAAGAGCGTCCGCGTAAACAGAGAGTTTCTTGAGTT
GGCGGAAAAATTACGCGGAAGAACTTCGTCGCTGGGTGGCAGTAGAACATCTTTCACGTT
CACCGTGAAAAGCAGTGATGCTTCGACTGAACAAAGGGAGCAGAAAATTTCCCGAGAAGA
GGCCGACCCAATGATGGTTATGCAGAAATTTTTGGAAGACAAGAGGCTTCGGTTGGTTGA
CTTGTTCCGAAACTTTGACAAGGATCTTAGTTGGAAGATATCTCCTGCCGAGTTCAAGAA
AGGAATCACAGACGCTGAAATTCCATTCACCAAACTTCAGCTTAAGAATTTAATGAACAG
TCTAGACATCGACACTGATGGCCAGGTTAATTACAGAACGCTAGTAAAGGAAGAATGAAG
ACTTCAAGTTGAGTTTACAGTGTGTTCAATACAGAACCAGAATATCGT
| Gene3D |
LRR_dom_sf (IPR032675) - T[79-390] 1.3E-67 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[132-154] 0.051 - T[160-178] 0.027 - T[188-209] 0.0031 - T[216-230] 1.4 - T[247-266] 0.12 - T[271-293] 2.1E-5 - T[299-322] 7.0E-4 - T[328-349] 0.85 |
| SUPERFAMILY |
EF-hand-dom_pair (IPR011992) - T[421-493] 4.47E-12 |
| ProSiteProfiles |
EF_hand_dom (IPR002048) - T[431-466] 10.496 |
| CDD |
EF_hand_dom (IPR002048) - T[435-489] 6.76121E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LR74A_HUMAN | 36.902 % | 306 | 6.52E-99 |
| LR74B_HUMAN | 38.739 % | 223 | 4.68E-68 |
| NLRC3_HUMAN | 30.07 % | 125 | 2.47E-30 |