Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 672

>KH.C2.65.v2.A.SL1-1
LPSICVLNYLEMSPLNEFSNETEKESKETDNLEDTPVNEVKVSETAIVDDPLPIVQLTDE
EAYDTDLEIEDEGRTAYRSFTAVDIYFKSCEQLGVVPASYFVTHLQHEVMNMSHHGLGPN
GTKAIAAPLVINTSILELNIEDNWITAEGMRDIADMLMENCYISILNISHNKLGSEGARY
VGEMLQENTTLRTLNISRNDFKDSDGQYFAEALRQNFRLKELDISGNEFCELGGEWMGQA
IAANEAIETLNLSWNHLRLKGALAVCAGMKSNITVKTLDLSWNGFADEGAMAMGEALKTN
NTLVWLDLSFNRISDKGLTMLAKGLEVNDTLRTLRIGDNPFGEEGALLLINAIFKNEKSA
IEDLDLKSVRVNREFLELAEKLRGRTSSLGGSRTSFTFTVKSSDASTEQREQKISREEAD
PMMVMQKFLEDKRLRLVDLFRNFDKDLSWKISPAEFKKGITDAEIPFTKLQLKNLMNSLD
IDTDGQVNYRELLIGKKEAVLKLREQRRKEVRRKAKEVEKTENFLSVWQEAVKATTPIHS
RDNSPSASPLSSRSLVVGTPGTKSSNVVAEASRRLKKGRRKSKHGAKLSPSTTPRSGYDD
EIQTSAPHHKDFGINKQLTRGDTELQPVTLLIPDVERTAKISNQKVSKDASRLSSRFRRT
AGIPNSRKIPLT

Nucleotide sequence

Length: 2,191

>KH2012:KH.C2.65.v2.A.SL1-1
GGTTTAGCTTCCTAGTATTTGTGTTTTAAATTACCTGGAAATGTCGCCGTTAAATGAATT
TTCAAATGAAACCGAAAAAGAAAGTAAAGAAACCGATAACTTAGAGGACACCCCAGTTAA
CGAGGTTAAGGTGTCCGAAACTGCCATAGTGGATGATCCTTTACCAATTGTTCAATTAAC
AGACGAAGAAGCGTATGATACAGATTTAGAAATAGAAGATGAAGGTAGAACCGCATATCG
CAGTTTTACAGCTGTTGACATTTACTTTAAATCCTGTGAGCAACTCGGTGTCGTGCCTGC
TTCTTATTTCGTAACCCACCTTCAACATGAAGTTATGAATATGAGCCATCATGGATTGGG
GCCAAATGGAACAAAAGCCATAGCTGCGCCCCTTGTGATAAACACTTCAATTTTGGAATT
AAACATCGAGGATAATTGGATAACAGCCGAGGGTATGAGAGATATAGCGGATATGTTAAT
GGAAAACTGCTACATTTCTATTCTGAACATATCTCACAACAAACTTGGATCCGAAGGCGC
CCGCTACGTTGGTGAGATGCTGCAGGAGAACACTACTTTGCGGACGCTTAATATTTCCCG
TAATGATTTTAAAGATTCTGACGGCCAGTACTTCGCAGAGGCGTTGCGTCAAAACTTCAG
GTTAAAAGAGCTTGACATCAGTGGAAACGAGTTTTGTGAATTGGGCGGTGAATGGATGGG
TCAAGCTATTGCTGCTAACGAAGCGATTGAAACACTTAATCTCAGCTGGAATCACCTGAG
ATTAAAGGGAGCACTTGCAGTGTGTGCTGGTATGAAATCAAACATCACTGTGAAAACTCT
CGATCTATCATGGAATGGTTTTGCCGATGAAGGAGCTATGGCGATGGGAGAGGCGTTGAA
AACCAACAACACATTAGTTTGGCTCGACCTCAGCTTTAACAGGATTTCAGATAAAGGTTT
AACCATGTTGGCAAAGGGTCTTGAGGTAAACGACACTCTACGAACGTTAAGGATCGGCGA
CAACCCATTCGGTGAGGAAGGAGCACTTTTGCTTATAAATGCAATCTTTAAAAACGAAAA
ATCGGCGATTGAAGATTTGGATTTGAAGAGCGTCCGCGTAAACAGAGAGTTTCTTGAGTT
GGCGGAAAAATTACGCGGAAGAACTTCGTCGCTGGGTGGCAGTAGAACATCTTTCACGTT
CACCGTGAAAAGCAGTGATGCTTCGACTGAACAAAGGGAGCAGAAAATTTCCCGAGAAGA
GGCCGACCCAATGATGGTTATGCAGAAATTTTTGGAAGACAAGAGGCTTCGGTTGGTTGA
CTTGTTCCGAAACTTTGACAAGGATCTTAGTTGGAAGATATCTCCTGCCGAGTTCAAGAA
AGGAATCACAGACGCTGAAATTCCATTCACCAAACTTCAGCTTAAGAATTTAATGAACAG
TCTAGACATCGACACTGATGGCCAGGTTAATTACAGGGAACTTCTTATTGGGAAAAAAGA
GGCAGTGTTAAAACTACGTGAACAAAGAAGGAAGGAGGTCCGCAGGAAAGCAAAGGAAGT
CGAAAAAACTGAGAACTTTCTTTCTGTGTGGCAAGAGGCGGTTAAAGCAACTACACCAAT
CCACAGTAGAGACAATTCGCCTTCAGCCTCGCCACTAAGTAGCAGAAGTCTTGTGGTTGG
AACACCGGGGACCAAAAGCAGCAACGTCGTGGCTGAAGCAAGTCGCCGATTAAAAAAAGG
GCGACGCAAGTCCAAACATGGCGCAAAGTTGAGTCCGTCTACCACTCCCCGCAGTGGTTA
CGATGACGAGATTCAAACGAGCGCTCCACATCATAAAGATTTCGGAATTAATAAACAATT
AACACGCGGAGATACGGAATTACAACCCGTTACGTTACTGATACCAGATGTAGAACGTAC
TGCGAAAATTTCAAACCAAAAAGTTTCCAAAGATGCAAGCAGACTATCCTCTCGCTTCAG
AAGAACAGCCGGAATTCCGAACTCCAGAAAAATCCCCCTAACCTAGTTTTTCACCAAAAC
ATATATTCCACCACTTCATGTACTTAGTATCCGTTTATTCAACACACATCTAGTTGTATT
CCATAGTTACATACTATAGAGGTGTCGCAATTGAGAGTTTTGGTAATATGCACCATTTTG
CACTTAAAATATTTGCCAAACATTTAAAAAG

InterProScan

Gene3D	LRR_dom_sf (IPR032675) - T[80-390] 2.4E-67
Pfam	Leu-rich_rpt (IPR001611) - T[132-154] 0.073 - T[160-178] 0.038 - T[188-209] 0.0044 - T[247-266] 0.17 - T[271-293] 3.0E-5 - T[299-322] 0.001 - T[328-349] 1.2
SUPERFAMILY	EF-hand-dom_pair (IPR011992) - T[422-494] 1.58E-12
ProSiteProfiles	EF_hand_dom (IPR002048) - T[431-466] 10.496 - T[467-502] 8.042
CDD	EF_hand_dom (IPR002048) - T[435-493] 7.88695E-9
SMART	EF_hand_dom (IPR002048) - T[435-463] 3.5 - T[471-499] 1.8
ProSitePatterns	EF_Hand_1_Ca_BS (IPR018247) - T[480-492] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LR74A_HUMAN	36.261 %	308	2.22E-97
LR74B_HUMAN	38.739 %	222	4.16E-66
NLRC3_HUMAN	29.655 %	124	2.07E-29

Transcript Model

Transcript Id

Possible name(s)

Gene model

Location

Amino acid sequence

Nucleotide sequence