- Transcript 'KH2012:KH.C1.1040.v1...' >
- Clone 'cign060l02' >
- Transcript 'KH2012:KH.C2.65.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C2.65.v2.A.SL1-1
Possible name(s)
LRRC74A; LRRC74B; NLRC3
Gene model
Location
KhC2 [2,619,209 / 2,624,415]
Amino acid sequence
Length: 672
>KH.C2.65.v2.A.SL1-1
LPSICVLNYLEMSPLNEFSNETEKESKETDNLEDTPVNEVKVSETAIVDDPLPIVQLTDE
EAYDTDLEIEDEGRTAYRSFTAVDIYFKSCEQLGVVPASYFVTHLQHEVMNMSHHGLGPN
GTKAIAAPLVINTSILELNIEDNWITAEGMRDIADMLMENCYISILNISHNKLGSEGARY
VGEMLQENTTLRTLNISRNDFKDSDGQYFAEALRQNFRLKELDISGNEFCELGGEWMGQA
IAANEAIETLNLSWNHLRLKGALAVCAGMKSNITVKTLDLSWNGFADEGAMAMGEALKTN
NTLVWLDLSFNRISDKGLTMLAKGLEVNDTLRTLRIGDNPFGEEGALLLINAIFKNEKSA
IEDLDLKSVRVNREFLELAEKLRGRTSSLGGSRTSFTFTVKSSDASTEQREQKISREEAD
PMMVMQKFLEDKRLRLVDLFRNFDKDLSWKISPAEFKKGITDAEIPFTKLQLKNLMNSLD
IDTDGQVNYRELLIGKKEAVLKLREQRRKEVRRKAKEVEKTENFLSVWQEAVKATTPIHS
RDNSPSASPLSSRSLVVGTPGTKSSNVVAEASRRLKKGRRKSKHGAKLSPSTTPRSGYDD
EIQTSAPHHKDFGINKQLTRGDTELQPVTLLIPDVERTAKISNQKVSKDASRLSSRFRRT
AGIPNSRKIPLT
Nucleotide sequence
Length: 2,191
>KH2012:KH.C2.65.v2.A.SL1-1
GGTTTAGCTTCCTAGTATTTGTGTTTTAAATTACCTGGAAATGTCGCCGTTAAATGAATT
TTCAAATGAAACCGAAAAAGAAAGTAAAGAAACCGATAACTTAGAGGACACCCCAGTTAA
CGAGGTTAAGGTGTCCGAAACTGCCATAGTGGATGATCCTTTACCAATTGTTCAATTAAC
AGACGAAGAAGCGTATGATACAGATTTAGAAATAGAAGATGAAGGTAGAACCGCATATCG
CAGTTTTACAGCTGTTGACATTTACTTTAAATCCTGTGAGCAACTCGGTGTCGTGCCTGC
TTCTTATTTCGTAACCCACCTTCAACATGAAGTTATGAATATGAGCCATCATGGATTGGG
GCCAAATGGAACAAAAGCCATAGCTGCGCCCCTTGTGATAAACACTTCAATTTTGGAATT
AAACATCGAGGATAATTGGATAACAGCCGAGGGTATGAGAGATATAGCGGATATGTTAAT
GGAAAACTGCTACATTTCTATTCTGAACATATCTCACAACAAACTTGGATCCGAAGGCGC
CCGCTACGTTGGTGAGATGCTGCAGGAGAACACTACTTTGCGGACGCTTAATATTTCCCG
TAATGATTTTAAAGATTCTGACGGCCAGTACTTCGCAGAGGCGTTGCGTCAAAACTTCAG
GTTAAAAGAGCTTGACATCAGTGGAAACGAGTTTTGTGAATTGGGCGGTGAATGGATGGG
TCAAGCTATTGCTGCTAACGAAGCGATTGAAACACTTAATCTCAGCTGGAATCACCTGAG
ATTAAAGGGAGCACTTGCAGTGTGTGCTGGTATGAAATCAAACATCACTGTGAAAACTCT
CGATCTATCATGGAATGGTTTTGCCGATGAAGGAGCTATGGCGATGGGAGAGGCGTTGAA
AACCAACAACACATTAGTTTGGCTCGACCTCAGCTTTAACAGGATTTCAGATAAAGGTTT
AACCATGTTGGCAAAGGGTCTTGAGGTAAACGACACTCTACGAACGTTAAGGATCGGCGA
CAACCCATTCGGTGAGGAAGGAGCACTTTTGCTTATAAATGCAATCTTTAAAAACGAAAA
ATCGGCGATTGAAGATTTGGATTTGAAGAGCGTCCGCGTAAACAGAGAGTTTCTTGAGTT
GGCGGAAAAATTACGCGGAAGAACTTCGTCGCTGGGTGGCAGTAGAACATCTTTCACGTT
CACCGTGAAAAGCAGTGATGCTTCGACTGAACAAAGGGAGCAGAAAATTTCCCGAGAAGA
GGCCGACCCAATGATGGTTATGCAGAAATTTTTGGAAGACAAGAGGCTTCGGTTGGTTGA
CTTGTTCCGAAACTTTGACAAGGATCTTAGTTGGAAGATATCTCCTGCCGAGTTCAAGAA
AGGAATCACAGACGCTGAAATTCCATTCACCAAACTTCAGCTTAAGAATTTAATGAACAG
TCTAGACATCGACACTGATGGCCAGGTTAATTACAGGGAACTTCTTATTGGGAAAAAAGA
GGCAGTGTTAAAACTACGTGAACAAAGAAGGAAGGAGGTCCGCAGGAAAGCAAAGGAAGT
CGAAAAAACTGAGAACTTTCTTTCTGTGTGGCAAGAGGCGGTTAAAGCAACTACACCAAT
CCACAGTAGAGACAATTCGCCTTCAGCCTCGCCACTAAGTAGCAGAAGTCTTGTGGTTGG
AACACCGGGGACCAAAAGCAGCAACGTCGTGGCTGAAGCAAGTCGCCGATTAAAAAAAGG
GCGACGCAAGTCCAAACATGGCGCAAAGTTGAGTCCGTCTACCACTCCCCGCAGTGGTTA
CGATGACGAGATTCAAACGAGCGCTCCACATCATAAAGATTTCGGAATTAATAAACAATT
AACACGCGGAGATACGGAATTACAACCCGTTACGTTACTGATACCAGATGTAGAACGTAC
TGCGAAAATTTCAAACCAAAAAGTTTCCAAAGATGCAAGCAGACTATCCTCTCGCTTCAG
AAGAACAGCCGGAATTCCGAACTCCAGAAAAATCCCCCTAACCTAGTTTTTCACCAAAAC
ATATATTCCACCACTTCATGTACTTAGTATCCGTTTATTCAACACACATCTAGTTGTATT
CCATAGTTACATACTATAGAGGTGTCGCAATTGAGAGTTTTGGTAATATGCACCATTTTG
CACTTAAAATATTTGCCAAACATTTAAAAAG
| Gene3D |
LRR_dom_sf (IPR032675) - T[80-390] 2.4E-67 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[132-154] 0.073 - T[160-178] 0.038 - T[188-209] 0.0044 - T[247-266] 0.17 - T[271-293] 3.0E-5 - T[299-322] 0.001 - T[328-349] 1.2 |
| SUPERFAMILY |
EF-hand-dom_pair (IPR011992) - T[422-494] 1.58E-12 |
| ProSiteProfiles |
EF_hand_dom (IPR002048) - T[431-466] 10.496 - T[467-502] 8.042 |
| CDD |
EF_hand_dom (IPR002048) - T[435-493] 7.88695E-9 |
| SMART |
EF_hand_dom (IPR002048) - T[435-463] 3.5 - T[471-499] 1.8 |
| ProSitePatterns |
EF_Hand_1_Ca_BS (IPR018247) - T[480-492] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LR74A_HUMAN | 36.261 % | 308 | 2.22E-97 |
| LR74B_HUMAN | 38.739 % | 222 | 4.16E-66 |
| NLRC3_HUMAN | 29.655 % | 124 | 2.07E-29 |