- Transcript 'Cisavi.CG.ENS81.R156...' >
- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.L170.28.v4...' >
- Transcript 'KH2012:KH.C2.728.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.728.v1.A.ND1-1
Possible name(s)
DDX27; DDX47; DDX56
Gene model
Location
KhC2 [5,434,365 / 5,439,178]
Amino acid sequence
Length: 589
>KH.C2.728.v1.A.ND1-1
VFAFKKLFLLVVCFASQNKMTEDDAATQDKVEFHEMGLDDRILKAIAEAGWASPTLIQEK
AIPLAINGKDILSRARTGSGKTAAYAVPIIQQLLNLKNTTQEDEYEQEVRGLVLVPSREL
SGQAYNMMQQLTTSCSRDVTSIDVSMEGDPNLLKPLLAVKPDIVVGTPSRVLAHVRAGNL
TLASVRWLVLDEADLLFSFGYEDDLKILLKHLPSSYQSFLMSATLSEDVEALKKLVLNNP
VTLNLSEEELPMTDKLTQYHVFCESEDDKYLLIYALNKLKLVRGKSLLFVNTINKCYRLK
LFLEQFSIFCCVLNSELPVSTRCHVVQQYNEGLYDYIIATDESAVVASTVSETAPEIKKT
GKHKKKKLTKAKEYGVSRGIDFQNVSNVINFDFPPTVGSYIHRVGRTARGDKSGTALSFV
VSEEMELLSQAQARLSSNADDQVMKPYQFKMDEIEGFRYRCKDAIRAVTKRAIHDARVKE
LRREMLNSAKLKTYFEENPYDLQVLRHDAASRPMKVKKHMKNVPEYLIPPTLKGLYSGVS
TRASQHQPPPSHDMKPRKRSSVRVMGKPNPKYKKKLEDPLKSFKFVKKS
Nucleotide sequence
Length: 2,031
>KH2012:KH.C2.728.v1.A.ND1-1
GTGTTTTTGCATTTAAGAAATTGTTTTTATTAGTAGTTTGTTTTGCTTCACAAAATAAAA
TGACAGAAGATGATGCAGCAACACAAGACAAGGTGGAATTTCACGAAATGGGCCTTGACG
ATCGTATTTTAAAGGCAATAGCAGAGGCAGGGTGGGCAAGTCCAACATTAATTCAGGAGA
AAGCAATTCCACTTGCAATAAATGGGAAGGATATTTTATCTCGTGCTCGAACCGGCTCGG
GCAAAACAGCGGCTTATGCTGTTCCTATAATTCAACAATTACTGAACCTGAAAAACACAA
CACAGGAAGATGAATACGAGCAAGAAGTTCGTGGATTGGTTCTTGTCCCATCACGTGAAT
TGTCAGGTCAAGCATACAACATGATGCAACAGCTCACCACATCATGCTCACGTGATGTCA
CCAGCATCGATGTTTCAATGGAAGGAGACCCAAATCTTTTGAAGCCTCTGCTTGCTGTAA
AACCAGACATAGTAGTTGGTACACCCAGTCGTGTGTTGGCCCATGTTCGAGCTGGTAACC
TTACACTTGCTTCAGTACGGTGGTTGGTTCTTGATGAAGCTGATCTTCTTTTTTCATTTG
GTTACGAAGACGACTTAAAAATTCTTCTTAAACACTTGCCAAGTAGTTACCAATCTTTCT
TAATGTCAGCTACACTAAGTGAGGATGTTGAAGCATTGAAGAAACTTGTGTTGAACAACC
CAGTTACATTAAATTTATCTGAAGAAGAACTTCCTATGACTGACAAGTTAACTCAATATC
ATGTATTCTGTGAATCTGAGGACGATAAATATCTTCTAATATACGCACTCAACAAACTTA
AACTGGTCAGAGGAAAATCCCTACTGTTTGTCAACACTATTAATAAATGCTACAGGTTGA
AATTATTTTTGGAACAATTTTCAATATTTTGTTGCGTTTTGAACTCAGAGTTACCTGTCA
GTACAAGGTGTCATGTGGTACAGCAATATAATGAGGGATTATATGATTACATCATTGCTA
CGGATGAAAGTGCTGTTGTTGCATCAACTGTGTCAGAAACTGCTCCAGAAATAAAGAAAA
CTGGAAAACACAAGAAAAAGAAATTGACAAAAGCAAAGGAATACGGAGTTTCGCGAGGCA
TTGATTTTCAGAATGTTTCAAACGTCATAAATTTTGACTTCCCGCCAACTGTTGGTTCAT
ACATCCACAGAGTGGGACGAACGGCAAGAGGGGATAAATCCGGCACCGCACTTTCATTTG
TTGTTTCGGAGGAGATGGAGTTATTGTCACAAGCACAAGCCCGGTTGTCTAGCAACGCAG
ATGATCAGGTCATGAAACCTTACCAGTTTAAAATGGATGAGATTGAGGGTTTTAGATATC
GGTGCAAGGATGCGATACGAGCGGTGACGAAGAGAGCAATACATGATGCGAGGGTGAAGG
AGTTAAGACGAGAGATGTTGAACTCTGCAAAACTGAAAACCTATTTTGAGGAAAACCCTT
ACGACCTCCAAGTATTGCGTCACGATGCAGCTTCCCGGCCAATGAAAGTGAAGAAACACA
TGAAGAATGTTCCGGAATATTTAATCCCACCCACGCTGAAAGGTTTATACAGCGGGGTTT
CCACCCGTGCGTCGCAACACCAGCCACCTCCATCACATGATATGAAACCAAGGAAAAGAA
GTTCAGTTCGAGTGATGGGAAAACCTAACCCGAAATATAAGAAGAAACTGGAAGATCCAC
TGAAAAGTTTTAAATTTGTAAAGAAATCTTGATTGAAAGCGTTGTATTAAAAGACAGGAG
ATGAGCGGAGGACAATAAAATGGAAAATAAATTGTGTTTTTTTTCAAAGTAGGAATAAGT
TAAATAGAGGCAGTGTCACTCCAGTGACAAGACATTTAAACCTGATTAGGTTTGGCAAGA
TTAAAAATAAAACTAAAAGAAAACTGATTTGCACATAATTTTTCAAATATATATATACAA
TGTGTAAAGTAAAAATAGTATGTTTGGTACATTAGAACATGAATGCAATAC
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[18-244] 5.56E-53 - T[254-341] 4.35E-29 - T[375-445] 4.35E-29 |
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[31-59] 10.409 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[50-259] 6.9E-40 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[55-231] 2.7E-38 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[62-243] 25.662 |
| CDD |
Helicase_C (IPR001650) - T[255-419] 1.90357E-22 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[255-452] 12.302 |
| Pfam |
Helicase_C (IPR001650) - T[269-410] 8.4E-30 |
| SMART |
Helicase_C (IPR001650) - T[297-411] 6.1E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX27_HUMAN | 28.986 % | 177 | 1.46E-47 |
| DDX47_HUMAN | 31.507 % | 208 | 6.01E-61 |
| DDX56_HUMAN | 53.61 % | 570 | 0 |