- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'KH2012:KH.C2.728.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.728.v1.A.nonSL3-1
Possible name(s)
DDX27; DDX47; DDX56
Gene model
Location
KhC2 [5,434,414 / 5,439,178]
Amino acid sequence
Length: 573
>KH.C2.728.v1.A.nonSL3-1
QNKMTEDDAATQDKVEFHEMGLDDRILKAIAEAGWASPTLIQEKAIPLAINGKDILSRAR
TGSGKTAAYAVPIIQQLLNLKNTTQEDEYEQEVRGLVLVPSRELSGQAYNMMQQLTTSCS
RDVTSIDVSMEGDPNLLKPLLAVKPDIVVGTPSRVLAHVRAGNLTLASVRWLVLDEADLL
FSFGYEDDLKILLKHLPSSYQSFLMSATLSEDVEALKKLVLNNPVTLNLSEEELPMTDKL
TQYHVFCESEDDKYLLIYALNKLKLVRGKSLLFVNTINKCYRLKLFLEQFSIFCCVLNSE
LPVSTRCHVVQQYNEGLYDYIIATDESAVVASTVSETAPEIKKTGKHKKKKLTKAKEYGV
SRGIDFQNVSNVINFDFPPTVGSYIHRVGRTARGDKSGTALSFVVSEEMELLSQAQARLS
SNADDQVMKPYQFKMDEIEGFRYRCKDAIRAVTKRAIHDARVKELRREMLNSAKLKTYFE
ENPYDLQVLRHDAASRPMKVKKHMKNVPEYLIPPTLKGLYSGVSTRASQHQPPPSHDMKP
RKRSSVRVMGKPNPKYKKKLEDPLKSFKFVKKS
Nucleotide sequence
Length: 1,982
>KH2012:KH.C2.728.v1.A.nonSL3-1
ACAAAATAAAATGACAGAAGATGATGCAGCAACACAAGACAAGGTGGAATTTCACGAAAT
GGGCCTTGACGATCGTATTTTAAAGGCAATAGCAGAGGCAGGGTGGGCAAGTCCAACATT
AATTCAGGAGAAAGCAATTCCACTTGCAATAAATGGGAAGGATATTTTATCTCGTGCTCG
AACCGGCTCGGGCAAAACAGCGGCTTATGCTGTTCCTATAATTCAACAATTACTGAACCT
GAAAAACACAACACAGGAAGATGAATACGAGCAAGAAGTTCGTGGATTGGTTCTTGTCCC
ATCACGTGAATTGTCAGGTCAAGCATACAACATGATGCAACAGCTCACCACATCATGCTC
ACGTGATGTCACCAGCATCGATGTTTCAATGGAAGGAGACCCAAATCTTTTGAAGCCTCT
GCTTGCTGTAAAACCAGACATAGTAGTTGGTACACCCAGTCGTGTGTTGGCCCATGTTCG
AGCTGGTAACCTTACACTTGCTTCAGTACGGTGGTTGGTTCTTGATGAAGCTGATCTTCT
TTTTTCATTTGGTTACGAAGACGACTTAAAAATTCTTCTTAAACACTTGCCAAGTAGTTA
CCAATCTTTCTTAATGTCAGCTACACTAAGTGAGGATGTTGAAGCATTGAAGAAACTTGT
GTTGAACAACCCAGTTACATTAAATTTATCTGAAGAAGAACTTCCTATGACTGACAAGTT
AACTCAATATCATGTATTCTGTGAATCTGAGGACGATAAATATCTTCTAATATACGCACT
CAACAAACTTAAACTGGTCAGAGGAAAATCCCTACTGTTTGTCAACACTATTAATAAATG
CTACAGGTTGAAATTATTTTTGGAACAATTTTCAATATTTTGTTGCGTTTTGAACTCAGA
GTTACCTGTCAGTACAAGGTGTCATGTGGTACAGCAATATAATGAGGGATTATATGATTA
CATCATTGCTACGGATGAAAGTGCTGTTGTTGCATCAACTGTGTCAGAAACTGCTCCAGA
AATAAAGAAAACTGGAAAACACAAGAAAAAGAAATTGACAAAAGCAAAGGAATACGGAGT
TTCGCGAGGCATTGATTTTCAGAATGTTTCAAACGTCATAAATTTTGACTTCCCGCCAAC
TGTTGGTTCATACATCCACAGAGTGGGACGAACGGCAAGAGGGGATAAATCCGGCACCGC
ACTTTCATTTGTTGTTTCGGAGGAGATGGAGTTATTGTCACAAGCACAAGCCCGGTTGTC
TAGCAACGCAGATGATCAGGTCATGAAACCTTACCAGTTTAAAATGGATGAGATTGAGGG
TTTTAGATATCGGTGCAAGGATGCGATACGAGCGGTGACGAAGAGAGCAATACATGATGC
GAGGGTGAAGGAGTTAAGACGAGAGATGTTGAACTCTGCAAAACTGAAAACCTATTTTGA
GGAAAACCCTTACGACCTCCAAGTATTGCGTCACGATGCAGCTTCCCGGCCAATGAAAGT
GAAGAAACACATGAAGAATGTTCCGGAATATTTAATCCCACCCACGCTGAAAGGTTTATA
CAGCGGGGTTTCCACCCGTGCGTCGCAACACCAGCCACCTCCATCACATGATATGAAACC
AAGGAAAAGAAGTTCAGTTCGAGTGATGGGAAAACCTAACCCGAAATATAAGAAGAAACT
GGAAGATCCACTGAAAAGTTTTAAATTTGTAAAGAAATCTTGATTGAAAGCGTTGTATTA
AAAGACAGGAGATGAGCGGAGGACAATAAAATGGAAAATAAATTGTGTTTTTTTTCAAAG
TAGGAATAAGTTAAATAGAGGCAGTGTCACTCCAGTGACAAGACATTTAAACCTGATTAG
GTTTGGCAAGATTAAAAATAAAACTAAAAGAAAACTGATTTGCACATAATTTTTCAAATA
TATATATACAATGTGTAAAGTAAAAATAGTATGTTTGGTACATTAGAACATGAATGCAAT
AC
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[6-228] 8.99E-53 - T[238-325] 4.13E-29 - T[359-429] 4.13E-29 |
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[15-43] 10.409 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[34-243] 6.9E-40 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[39-215] 2.6E-38 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[46-227] 25.662 |
| CDD |
Helicase_C (IPR001650) - T[239-403] 1.74444E-22 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[239-436] 12.302 |
| Pfam |
Helicase_C (IPR001650) - T[253-394] 8.0E-30 |
| SMART |
Helicase_C (IPR001650) - T[281-395] 6.1E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX27_HUMAN | 28.986 % | 178 | 6.91E-48 |
| DDX47_HUMAN | 31.667 % | 207 | 7.19E-61 |
| DDX56_HUMAN | 53.61 % | 569 | 0 |