- Transcript 'KH2012:KH.C2.728.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.728.v1.A.nonSL5-1
Possible name(s)
DDX27; DDX47; DDX56
Gene model
Location
KhC2 [5,434,447 / 5,439,178]
Amino acid sequence
Length: 562
>KH.C2.728.v1.A.nonSL5-1
QDKVEFHEMGLDDRILKAIAEAGWASPTLIQEKAIPLAINGKDILSRARTGSGKTAAYAV
PIIQQLLNLKNTTQEDEYEQEVRGLVLVPSRELSGQAYNMMQQLTTSCSRDVTSIDVSME
GDPNLLKPLLAVKPDIVVGTPSRVLAHVRAGNLTLASVRWLVLDEADLLFSFGYEDDLKI
LLKHLPSSYQSFLMSATLSEDVEALKKLVLNNPVTLNLSEEELPMTDKLTQYHVFCESED
DKYLLIYALNKLKLVRGKSLLFVNTINKCYRLKLFLEQFSIFCCVLNSELPVSTRCHVVQ
QYNEGLYDYIIATDESAVVASTVSETAPEIKKTGKHKKKKLTKAKEYGVSRGIDFQNVSN
VINFDFPPTVGSYIHRVGRTARGDKSGTALSFVVSEEMELLSQAQARLSSNADDQVMKPY
QFKMDEIEGFRYRCKDAIRAVTKRAIHDARVKELRREMLNSAKLKTYFEENPYDLQVLRH
DAASRPMKVKKHMKNVPEYLIPPTLKGLYSGVSTRASQHQPPPSHDMKPRKRSSVRVMGK
PNPKYKKKLEDPLKSFKFVKKS
Nucleotide sequence
Length: 1,949
>KH2012:KH.C2.728.v1.A.nonSL5-1
ACAAGACAAGGTGGAATTTCACGAAATGGGCCTTGACGATCGTATTTTAAAGGCAATAGC
AGAGGCAGGGTGGGCAAGTCCAACATTAATTCAGGAGAAAGCAATTCCACTTGCAATAAA
TGGGAAGGATATTTTATCTCGTGCTCGAACCGGCTCGGGCAAAACAGCGGCTTATGCTGT
TCCTATAATTCAACAATTACTGAACCTGAAAAACACAACACAGGAAGATGAATACGAGCA
AGAAGTTCGTGGATTGGTTCTTGTCCCATCACGTGAATTGTCAGGTCAAGCATACAACAT
GATGCAACAGCTCACCACATCATGCTCACGTGATGTCACCAGCATCGATGTTTCAATGGA
AGGAGACCCAAATCTTTTGAAGCCTCTGCTTGCTGTAAAACCAGACATAGTAGTTGGTAC
ACCCAGTCGTGTGTTGGCCCATGTTCGAGCTGGTAACCTTACACTTGCTTCAGTACGGTG
GTTGGTTCTTGATGAAGCTGATCTTCTTTTTTCATTTGGTTACGAAGACGACTTAAAAAT
TCTTCTTAAACACTTGCCAAGTAGTTACCAATCTTTCTTAATGTCAGCTACACTAAGTGA
GGATGTTGAAGCATTGAAGAAACTTGTGTTGAACAACCCAGTTACATTAAATTTATCTGA
AGAAGAACTTCCTATGACTGACAAGTTAACTCAATATCATGTATTCTGTGAATCTGAGGA
CGATAAATATCTTCTAATATACGCACTCAACAAACTTAAACTGGTCAGAGGAAAATCCCT
ACTGTTTGTCAACACTATTAATAAATGCTACAGGTTGAAATTATTTTTGGAACAATTTTC
AATATTTTGTTGCGTTTTGAACTCAGAGTTACCTGTCAGTACAAGGTGTCATGTGGTACA
GCAATATAATGAGGGATTATATGATTACATCATTGCTACGGATGAAAGTGCTGTTGTTGC
ATCAACTGTGTCAGAAACTGCTCCAGAAATAAAGAAAACTGGAAAACACAAGAAAAAGAA
ATTGACAAAAGCAAAGGAATACGGAGTTTCGCGAGGCATTGATTTTCAGAATGTTTCAAA
CGTCATAAATTTTGACTTCCCGCCAACTGTTGGTTCATACATCCACAGAGTGGGACGAAC
GGCAAGAGGGGATAAATCCGGCACCGCACTTTCATTTGTTGTTTCGGAGGAGATGGAGTT
ATTGTCACAAGCACAAGCCCGGTTGTCTAGCAACGCAGATGATCAGGTCATGAAACCTTA
CCAGTTTAAAATGGATGAGATTGAGGGTTTTAGATATCGGTGCAAGGATGCGATACGAGC
GGTGACGAAGAGAGCAATACATGATGCGAGGGTGAAGGAGTTAAGACGAGAGATGTTGAA
CTCTGCAAAACTGAAAACCTATTTTGAGGAAAACCCTTACGACCTCCAAGTATTGCGTCA
CGATGCAGCTTCCCGGCCAATGAAAGTGAAGAAACACATGAAGAATGTTCCGGAATATTT
AATCCCACCCACGCTGAAAGGTTTATACAGCGGGGTTTCCACCCGTGCGTCGCAACACCA
GCCACCTCCATCACATGATATGAAACCAAGGAAAAGAAGTTCAGTTCGAGTGATGGGAAA
ACCTAACCCGAAATATAAGAAGAAACTGGAAGATCCACTGAAAAGTTTTAAATTTGTAAA
GAAATCTTGATTGAAAGCGTTGTATTAAAAGACAGGAGATGAGCGGAGGACAATAAAATG
GAAAATAAATTGTGTTTTTTTTCAAAGTAGGAATAAGTTAAATAGAGGCAGTGTCACTCC
AGTGACAAGACATTTAAACCTGATTAGGTTTGGCAAGATTAAAAATAAAACTAAAAGAAA
ACTGATTTGCACATAATTTTTCAAATATATATATACAATGTGTAAAGTAAAAATAGTATG
TTTGGTACATTAGAACATGAATGCAATAC
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[4-217] 3.0E-52 - T[227-314] 3.91E-29 - T[348-418] 3.91E-29 |
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[4-32] 10.409 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[23-232] 6.9E-40 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[28-204] 2.5E-38 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[35-216] 25.662 |
| CDD |
Helicase_C (IPR001650) - T[228-392] 2.01971E-22 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[228-425] 12.302 |
| Pfam |
Helicase_C (IPR001650) - T[242-383] 7.7E-30 |
| SMART |
Helicase_C (IPR001650) - T[270-384] 6.1E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX27_HUMAN | 28.993 % | 176 | 4.31E-47 |
| DDX47_HUMAN | 31.667 % | 207 | 7.47E-61 |
| DDX56_HUMAN | 53.61 % | 569 | 0 |