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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C5.61.v4.A...'
  2. Transcript 'KH2012:KH.S612.3.v1....'
  3. Transcript 'KH2012:KH.C3.199.v2....'
  4. Transcript 'KH2012:KH.C2.728.v1....'

Transcript Model

Transcript Id

KH2012:KH.C2.728.v1.A.SL2-1

Possible name(s)

DDX27; DDX47; DDX56

Location

KhC2 [5,434,382 / 5,439,178]

Sequences

Amino acid sequence

Length: 584

>KH.C2.728.v1.A.SL2-1
KLFLLVVCFASQNKMTEDDAATQDKVEFHEMGLDDRILKAIAEAGWASPTLIQEKAIPLA
INGKDILSRARTGSGKTAAYAVPIIQQLLNLKNTTQEDEYEQEVRGLVLVPSRELSGQAY
NMMQQLTTSCSRDVTSIDVSMEGDPNLLKPLLAVKPDIVVGTPSRVLAHVRAGNLTLASV
RWLVLDEADLLFSFGYEDDLKILLKHLPSSYQSFLMSATLSEDVEALKKLVLNNPVTLNL
SEEELPMTDKLTQYHVFCESEDDKYLLIYALNKLKLVRGKSLLFVNTINKCYRLKLFLEQ
FSIFCCVLNSELPVSTRCHVVQQYNEGLYDYIIATDESAVVASTVSETAPEIKKTGKHKK
KKLTKAKEYGVSRGIDFQNVSNVINFDFPPTVGSYIHRVGRTARGDKSGTALSFVVSEEM
ELLSQAQARLSSNADDQVMKPYQFKMDEIEGFRYRCKDAIRAVTKRAIHDARVKELRREM
LNSAKLKTYFEENPYDLQVLRHDAASRPMKVKKHMKNVPEYLIPPTLKGLYSGVSTRASQ
HQPPPSHDMKPRKRSSVRVMGKPNPKYKKKLEDPLKSFKFVKKS

Nucleotide sequence

Length: 2,014

>KH2012:KH.C2.728.v1.A.SL2-1
AAATTGTTTTTATTAGTAGTTTGTTTTGCTTCACAAAATAAAATGACAGAAGATGATGCA
GCAACACAAGACAAGGTGGAATTTCACGAAATGGGCCTTGACGATCGTATTTTAAAGGCA
ATAGCAGAGGCAGGGTGGGCAAGTCCAACATTAATTCAGGAGAAAGCAATTCCACTTGCA
ATAAATGGGAAGGATATTTTATCTCGTGCTCGAACCGGCTCGGGCAAAACAGCGGCTTAT
GCTGTTCCTATAATTCAACAATTACTGAACCTGAAAAACACAACACAGGAAGATGAATAC
GAGCAAGAAGTTCGTGGATTGGTTCTTGTCCCATCACGTGAATTGTCAGGTCAAGCATAC
AACATGATGCAACAGCTCACCACATCATGCTCACGTGATGTCACCAGCATCGATGTTTCA
ATGGAAGGAGACCCAAATCTTTTGAAGCCTCTGCTTGCTGTAAAACCAGACATAGTAGTT
GGTACACCCAGTCGTGTGTTGGCCCATGTTCGAGCTGGTAACCTTACACTTGCTTCAGTA
CGGTGGTTGGTTCTTGATGAAGCTGATCTTCTTTTTTCATTTGGTTACGAAGACGACTTA
AAAATTCTTCTTAAACACTTGCCAAGTAGTTACCAATCTTTCTTAATGTCAGCTACACTA
AGTGAGGATGTTGAAGCATTGAAGAAACTTGTGTTGAACAACCCAGTTACATTAAATTTA
TCTGAAGAAGAACTTCCTATGACTGACAAGTTAACTCAATATCATGTATTCTGTGAATCT
GAGGACGATAAATATCTTCTAATATACGCACTCAACAAACTTAAACTGGTCAGAGGAAAA
TCCCTACTGTTTGTCAACACTATTAATAAATGCTACAGGTTGAAATTATTTTTGGAACAA
TTTTCAATATTTTGTTGCGTTTTGAACTCAGAGTTACCTGTCAGTACAAGGTGTCATGTG
GTACAGCAATATAATGAGGGATTATATGATTACATCATTGCTACGGATGAAAGTGCTGTT
GTTGCATCAACTGTGTCAGAAACTGCTCCAGAAATAAAGAAAACTGGAAAACACAAGAAA
AAGAAATTGACAAAAGCAAAGGAATACGGAGTTTCGCGAGGCATTGATTTTCAGAATGTT
TCAAACGTCATAAATTTTGACTTCCCGCCAACTGTTGGTTCATACATCCACAGAGTGGGA
CGAACGGCAAGAGGGGATAAATCCGGCACCGCACTTTCATTTGTTGTTTCGGAGGAGATG
GAGTTATTGTCACAAGCACAAGCCCGGTTGTCTAGCAACGCAGATGATCAGGTCATGAAA
CCTTACCAGTTTAAAATGGATGAGATTGAGGGTTTTAGATATCGGTGCAAGGATGCGATA
CGAGCGGTGACGAAGAGAGCAATACATGATGCGAGGGTGAAGGAGTTAAGACGAGAGATG
TTGAACTCTGCAAAACTGAAAACCTATTTTGAGGAAAACCCTTACGACCTCCAAGTATTG
CGTCACGATGCAGCTTCCCGGCCAATGAAAGTGAAGAAACACATGAAGAATGTTCCGGAA
TATTTAATCCCACCCACGCTGAAAGGTTTATACAGCGGGGTTTCCACCCGTGCGTCGCAA
CACCAGCCACCTCCATCACATGATATGAAACCAAGGAAAAGAAGTTCAGTTCGAGTGATG
GGAAAACCTAACCCGAAATATAAGAAGAAACTGGAAGATCCACTGAAAAGTTTTAAATTT
GTAAAGAAATCTTGATTGAAAGCGTTGTATTAAAAGACAGGAGATGAGCGGAGGACAATA
AAATGGAAAATAAATTGTGTTTTTTTTCAAAGTAGGAATAAGTTAAATAGAGGCAGTGTC
ACTCCAGTGACAAGACATTTAAACCTGATTAGGTTTGGCAAGATTAAAAATAAAACTAAA
AGAAAACTGATTTGCACATAATTTTTCAAATATATATATACAATGTGTAAAGTAAAAATA
GTATGTTTGGTACATTAGAACATGAATGCAATAC

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[13-239] 5.56E-53 - T[249-336] 4.24E-29 - T[370-440] 4.24E-29
ProSiteProfiles
RNA_helicase_DEAD_Q_motif (IPR014014) - T[26-54] 10.409
SMART
Helicase_ATP-bd (IPR014001) - T[45-254] 6.9E-40
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[50-226] 2.7E-38
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[57-238] 25.662
CDD
Helicase_C (IPR001650) - T[250-414] 1.80965E-22
ProSiteProfiles
Helicase_C (IPR001650) - T[250-447] 12.302
Pfam
Helicase_C (IPR001650) - T[264-405] 8.2E-30
SMART
Helicase_C (IPR001650) - T[292-406] 6.1E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX27_HUMAN 28.986 % 177 1.52E-47
DDX47_HUMAN 31.507 % 208 5.37E-61
DDX56_HUMAN 53.61 % 570 0