- Transcript 'Phmamm.CG.MTP2014.S5...' >
- Transcript 'KH2012:KH.C2.917.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.917.v1.A.ND1-1
Possible name(s)
GSX1; GSX2; HOXA3
Gene model
Location
KhC2 [5,510,666 / 5,512,298]
Amino acid sequence
Length: 352
>KH.C2.917.v1.A.ND1-1
ATTMLQDIVQSNSHLAKLNMNKKEDTPSRHSFSIESLIKTSSPRHNYDSDERSGNSFSPE
ATSSRKTETKSPQLVHRTSSPQNTTTLRFSPSNTPHSSDRLQDEGTSSPREYGLSQSSYQ
QHHFQRPCNRGSPLKQPLFHSRDFPNNLTPHNGYLNALRQISQQNYSWNDRAAAALVTFS
VLGGNLGQWQNNNLNYPHCSERDIQDYQASSYSHAPDLRSIHRNPAYHRNDPSYMVDQSQ
GCGSGSSMQQLPAVEHQVSSRVTPDPVTDTTSPLCEDDEQGDRKRMRTAFTGSQLLELER
EFHSDMYLTRLRRIRIAQMLNLSEKQIKIWFQNRRVKKKKGEKPQQDSREQC
Nucleotide sequence
Length: 1,290
>KH2012:KH.C2.917.v1.A.ND1-1
TGCAGCAGACGAAGATAAAACGAAGTACAGAGTATACCACAGATGAAATATTAGGTGCGG
ACAAACTCAGTAATCTCTAGCCGTAAACAGATCTTGAGCAACAACCATGTTACAAGATAT
AGTCCAGTCAAACAGTCATCTCGCCAAGTTAAACATGAATAAAAAGGAAGATACTCCTTC
ACGTCATTCGTTTTCCATCGAATCGTTAATCAAGACGTCATCACCACGTCACAATTACGA
CAGTGACGAAAGGTCCGGCAACTCTTTTAGCCCGGAAGCTACGAGCTCTAGAAAAACAGA
AACGAAGTCTCCACAGCTCGTCCATAGAACCAGCTCTCCGCAAAATACAACTACGTTGAG
ATTCTCCCCTTCTAATACGCCTCACAGCAGCGATCGGCTACAAGACGAAGGTACAAGCTC
TCCGAGAGAATATGGTTTAAGTCAGTCTTCGTACCAGCAGCACCATTTTCAACGTCCTTG
TAACAGAGGATCACCCTTGAAGCAACCGTTGTTTCATAGCAGGGATTTTCCGAACAATTT
AACCCCACATAATGGCTACCTGAACGCGCTAAGACAGATTTCGCAACAGAATTATTCGTG
GAATGATAGAGCTGCAGCGGCATTAGTAACGTTTTCAGTTTTGGGTGGGAATCTTGGCCA
GTGGCAAAATAACAATCTTAATTATCCCCACTGCTCTGAACGAGACATTCAAGACTATCA
AGCAAGCTCATACTCACACGCCCCGGACCTCAGAAGTATTCATAGAAACCCAGCTTATCA
TCGCAACGACCCAAGTTATATGGTGGACCAAAGTCAAGGATGCGGTAGCGGATCGTCAAT
GCAGCAGTTACCTGCAGTTGAACATCAAGTTAGCAGTCGGGTAACACCAGACCCCGTTAC
AGACACAACGTCGCCACTATGTGAAGACGATGAGCAGGGAGACCGGAAGCGGATGCGCAC
CGCGTTCACTGGGAGTCAGCTGCTTGAGCTTGAGAGGGAATTCCACTCAGACATGTACCT
GACCAGGCTTCGTCGAATTCGAATTGCACAGATGCTCAACCTCTCCGAAAAACAAATCAA
AATATGGTTTCAAAACAGAAGGGTGAAGAAAAAGAAGGGCGAGAAACCCCAGCAGGACTC
GCGGGAACAGTGTTAGTTTGATTCAGAATATTTTGCCGCATTTTAGATGCAACCGTTTTG
GCCTACACTGAAATGTCGGTAATGTGCATTACTGTGAACTATATTTAACGTGGCCTTTAT
GTGATAAGCCGAATAAACTGCAACTATATT
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[267-342] 1.8E-24 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[281-341] 20.941 |
| SMART |
Homeobox_dom (IPR001356) - T[283-345] 9.4E-26 |
| Pfam |
Homeobox_dom (IPR001356) - T[284-340] 1.0E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[284-342] 3.13268E-20 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[305-316] 1.9E-5 - T[320-330] 1.9E-5 - T[330-339] 1.9E-5 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[316-339] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXA3_HUMAN | 56.164 % | 92.8 | 6.39E-21 |
| GSX1_HUMAN | 80 % | 102 | 3.96E-25 |
| GSX2_HUMAN | 72.857 % | 105 | 5.53E-26 |