Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'KH2012:KH.C2.925.v1....'

Transcript Model

Transcript Id

KH2012:KH.C2.925.v1.A.SL2-1

Possible name(s)

SDC1; SDC2; SDC4

Location

KhC2 [6,364,569 / 6,372,266]

Sequences

Amino acid sequence

Length: 248

>KH.C2.925.v1.A.SL2-1
FVKSKKMLKKIGIVLLLVHLFQVNGQYSDNNKEFEGSGETTVDTIITDDEDMIDMMEGST
SGHMDLPSYDDELFLVHSLNKNLNFSTLATPTTGMNEVTTTIVRDTPPSLEKETWDEEPE
VILESTPPLSGHKDKEEIGEVPVKSKFDVEPSEMGDGDNVEVKDNEDGEVLSEKPSDPKK
TVSFAQSSQLMAALIIGGCVGLLFAVCVIMLLAYRMRKKDEGSYALDEQKKPASPSAYQY
SQGQEYYA

Nucleotide sequence

Length: 1,820

>KH2012:KH.C2.925.v1.A.SL2-1
AAGGGTGAAGAAGGAAATATATTTGTTGGATTTATTAATAATTTGTGAAAAGCAAAAAAA
TGCTGAAGAAAATTGGAATTGTTCTTTTGTTGGTCCATTTATTTCAAGTAAATGGCCAAT
ACTCCGATAATAACAAAGAGTTTGAAGGATCGGGTGAAACCACAGTGGATACGATCATTA
CTGATGATGAAGATATGATTGACATGATGGAAGGTTCTACATCAGGTCACATGGATTTAC
CTTCATATGATGATGAACTCTTTCTTGTTCACTCCTTGAATAAAAATTTAAACTTTTCCA
CTCTTGCTACACCTACAACAGGAATGAATGAAGTAACAACAACGATAGTAAGAGATACAC
CACCTTCACTTGAAAAGGAAACTTGGGATGAGGAACCTGAAGTAATCCTTGAGTCCACCC
CTCCACTTTCTGGTCATAAAGACAAGGAGGAGATTGGAGAAGTTCCTGTCAAATCAAAGT
TCGATGTTGAACCAAGTGAGATGGGTGATGGAGATAATGTAGAGGTTAAAGACAATGAAG
ATGGGGAAGTTCTATCTGAAAAGCCAAGTGATCCAAAAAAGACGGTTTCATTTGCTCAAA
GCAGTCAGTTAATGGCAGCGCTTATTATCGGCGGGTGCGTGGGTCTCCTGTTTGCCGTGT
GCGTTATCATGCTTCTTGCATACCGCATGCGAAAGAAAGATGAAGGAAGTTATGCTCTCG
ATGAACAAAAGAAACCCGCATCACCTTCTGCTTACCAGTACTCACAGGGGCAGGAATACT
ACGCCTAGTCGAACTATAGAGCGAATGATGCGTGCCAAGTTATCCATGTAAATAATATCT
GCTCTTCACATTCAACTATCTACCTGTATTATCAGCACATATGTAGTGGATAGACAGCCA
GTTTGACACCACCCTCTACATTAGGGTACATTGCTTGTTCTGTATGGTAAGAGTTGGGAG
AAAATGAGCTATTGCTCTGATTTTTATTGCCATCTGGAACTTTATTATTATTATTACTTG
TGTCCTACAACATTTTTTGTGTGGTTTTGTACAGTTTTCCAGTCTAAAACTCGGTGCGTC
ACTTAAGTTCACAAATTTTCATATCTCAAGGTCCTAACCACATTTTGACGTAGCATTATT
TGCTCATAATGTCCATTGTTGTTAAATGGTGCAAACATTTCAAAGTTGCTGAGGCTGTTA
AACAGTTGCTGATCTCCTTATACACTCGGTGCTAGTATTTTTACATTTTAAACACAGATA
ATTTAAAAACCATAATTTTTAACAATGTTAAAGCATAGGAAATGTATTTTTAAAGATTTC
CCAGATTTTTATTGAATGTTTTCAATCAGCACATGATAATTGTTGCAAGGCCCTTCTTAT
GTAAGTGAAGCTCTTTCTAGTTGCGTTTTATCATTTTTGTTGTTTTGATTTTTGTTTGTG
GGATTAGAATCAAGATGTTTTCTCCTTAGATTTCATGGCCAGTGTTTCCTTTATTCGAAA
TTTACCGCAAAATCTAAACATTTTAAATGGTGATGAAAACACTGGCCATGGAACATGTAT
TTAATCATCATTGTATGTAAAGTTATAACATACAGTTGGTGGACATAGCGAACATTACGC
TCCTTGTACAAAATACTCCAAGTGCATTCCTACACTAAGTAACCCTCAAAAATATATCAT
TAATTATTAAGCTTTTTGCTTTTATCTGTTACAAATGTATCAGGTACAAATCGCAGCATG
GTTTTGGTGCTTTAGCAAGCTCACGTAATGTCGTTATCAAACTGAACACGTATTGTACAA
AGTAATACATTTTTTACAGT

InterProScan

PANTHER
Syndecan_inverte (IPR031198) - T[7-131] 5.8E-41 - T[133-248] 5.8E-41
PANTHER
Syndecan (IPR001050) - T[7-131] 5.8E-41 - T[133-248] 5.8E-41
Pfam
Syndecan/Neurexin_dom (IPR027789) - T[184-245] 6.6E-24
ProSitePatterns
Syndecan_CS (IPR030479) - T[214-224] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value