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  1. Region 'REG00001190'
  2. Clone 'CCAO9443'
  3. Transcript 'KH2012:KH.C8.300.v1....'
  4. Region 'REG00001228'
  5. Transcript 'KH2012:KH.C2.925.v2....'

Transcript Model

Transcript Id

KH2012:KH.C2.925.v2.A.SL1-1

Possible name(s)

SDC1; SDC2; SDC4

Location

KhC2 [6,364,569 / 6,372,350]

Sequences

Amino acid sequence

Length: 216

>KH.C2.925.v2.A.SL1-1
FVKSKKMLKKIGIVLLLVHLFQVNGQYSDNNKEFEGSGETTVDTIITDDEDMIDMMEGST
SGMNEVTTTIVRDTPPSLEKETWDEEPEVILESTPPLSGHKDKEEIGEVPVKSKFDVEPS
EMGDGDNVEVKDNEDGEVLSEKPSDPKKTVSFAQSSQLMAALIIGGCVGLLFAVCVIMLL
AYRMRKKDEGSYALDEQKKPASPSAYQYSQGQEYYA

Nucleotide sequence

Length: 1,808

>KH2012:KH.C2.925.v2.A.SL1-1
ACATTGATTAACGAACGATATTGTAAAGTTGTGCCTCGTGGATTGAGTTTACAAAGTTTT
AAAAAGTTGACGTGAAAATTTGAGAAGGGTGAAGAAGGAAATATATTTGTTGGATTTATT
AATAATTTGTGAAAAGCAAAAAAATGCTGAAGAAAATTGGAATTGTTCTTTTGTTGGTCC
ATTTATTTCAAGTAAATGGCCAATACTCCGATAATAACAAAGAGTTTGAAGGATCGGGTG
AAACCACAGTGGATACGATCATTACTGATGATGAAGATATGATTGACATGATGGAAGGTT
CTACATCAGGAATGAATGAAGTAACAACAACGATAGTAAGAGATACACCACCTTCACTTG
AAAAGGAAACTTGGGATGAGGAACCTGAAGTAATCCTTGAGTCCACCCCTCCACTTTCTG
GTCATAAAGACAAGGAGGAGATTGGAGAAGTTCCTGTCAAATCAAAGTTCGATGTTGAAC
CAAGTGAGATGGGTGATGGAGATAATGTAGAGGTTAAAGACAATGAAGATGGGGAAGTTC
TATCTGAAAAGCCAAGTGATCCAAAAAAGACGGTTTCATTTGCTCAAAGCAGTCAGTTAA
TGGCAGCGCTTATTATCGGCGGGTGCGTGGGTCTCCTGTTTGCCGTGTGCGTTATCATGC
TTCTTGCATACCGCATGCGAAAGAAAGATGAAGGAAGTTATGCTCTCGATGAACAAAAGA
AACCCGCATCACCTTCTGCTTACCAGTACTCACAGGGGCAGGAATACTACGCCTAGTCGA
ACTATAGAGCGAATGATGCGTGCCAAGTTATCCATGTAAATAATATCTGCTCTTCACATT
CAACTATCTACCTGTATTATCAGCACATATGTAGTGGATAGACAGCCAGTTTGACACCAC
CCTCTACATTAGGGTACATTGCTTGTTCTGTATGGTAAGAGTTGGGAGAAAATGAGCTAT
TGCTCTGATTTTTATTGCCATCTGGAACTTTATTATTATTATTACTTGTGTCCTACAACA
TTTTTTGTGTGGTTTTGTACAGTTTTCCAGTCTAAAACTCGGTGCGTCACTTAAGTTCAC
AAATTTTCATATCTCAAGGTCCTAACCACATTTTGACGTAGCATTATTTGCTCATAATGT
CCATTGTTGTTAAATGGTGCAAACATTTCAAAGTTGCTGAGGCTGTTAAACAGTTGCTGA
TCTCCTTATACACTCGGTGCTAGTATTTTTACATTTTAAACACAGATAATTTAAAAACCA
TAATTTTTAACAATGTTAAAGCATAGGAAATGTATTTTTAAAGATTTCCCAGATTTTTAT
TGAATGTTTTCAATCAGCACATGATAATTGTTGCAAGGCCCTTCTTATGTAAGTGAAGCT
CTTTCTAGTTGCGTTTTATCATTTTTGTTGTTTTGATTTTTGTTTGTGGGATTAGAATCA
AGATGTTTTCTCCTTAGATTTCATGGCCAGTGTTTCCTTTATTCGAAATTTACCGCAAAA
TCTAAACATTTTAAATGGTGATGAAAACACTGGCCATGGAACATGTATTTAATCATCATT
GTATGTAAAGTTATAACATACAGTTGGTGGACATAGCGAACATTACGCTCCTTGTACAAA
ATACTCCAAGTGCATTCCTACACTAAGTAACCCTCAAAAATATATCATTAATTATTAAGC
TTTTTGCTTTTATCTGTTACAAATGTATCAGGTACAAATCGCAGCATGGTTTTGGTGCTT
TAGCAAGCTCACGTAATGTCGTTATCAAACTGAACACGTATTGTACAAAGTAATACATTT
TTTACAGT

InterProScan

PANTHER
Syndecan (IPR001050) - T[7-99] 4.6E-45 - T[101-216] 4.6E-45
PANTHER
Syndecan_inverte (IPR031198) - T[7-99] 4.6E-45 - T[101-216] 4.6E-45
Pfam
Syndecan/Neurexin_dom (IPR027789) - T[152-213] 5.1E-24
ProSitePatterns
Syndecan_CS (IPR030479) - T[182-192] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value





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