Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C2.925.v2.A.SL2-1

Possible name(s)

SDC1; SDC2; SDC4

Gene model

KH2012:KH.C2.925

Location

KhC2 [6,364,569 / 6,372,266]

Sequences

Amino acid sequence

Length: 216

>KH.C2.925.v2.A.SL2-1
FVKSKKMLKKIGIVLLLVHLFQVNGQYSDNNKEFEGSGETTVDTIITDDEDMIDMMEGST
SGMNEVTTTIVRDTPPSLEKETWDEEPEVILESTPPLSGHKDKEEIGEVPVKSKFDVEPS
EMGDGDNVEVKDNEDGEVLSEKPSDPKKTVSFAQSSQLMAALIIGGCVGLLFAVCVIMLL
AYRMRKKDEGSYALDEQKKPASPSAYQYSQGQEYYA

Nucleotide sequence

Length: 1,724

>KH2012:KH.C2.925.v2.A.SL2-1
AAGGGTGAAGAAGGAAATATATTTGTTGGATTTATTAATAATTTGTGAAAAGCAAAAAAA
TGCTGAAGAAAATTGGAATTGTTCTTTTGTTGGTCCATTTATTTCAAGTAAATGGCCAAT
ACTCCGATAATAACAAAGAGTTTGAAGGATCGGGTGAAACCACAGTGGATACGATCATTA
CTGATGATGAAGATATGATTGACATGATGGAAGGTTCTACATCAGGAATGAATGAAGTAA
CAACAACGATAGTAAGAGATACACCACCTTCACTTGAAAAGGAAACTTGGGATGAGGAAC
CTGAAGTAATCCTTGAGTCCACCCCTCCACTTTCTGGTCATAAAGACAAGGAGGAGATTG
GAGAAGTTCCTGTCAAATCAAAGTTCGATGTTGAACCAAGTGAGATGGGTGATGGAGATA
ATGTAGAGGTTAAAGACAATGAAGATGGGGAAGTTCTATCTGAAAAGCCAAGTGATCCAA
AAAAGACGGTTTCATTTGCTCAAAGCAGTCAGTTAATGGCAGCGCTTATTATCGGCGGGT
GCGTGGGTCTCCTGTTTGCCGTGTGCGTTATCATGCTTCTTGCATACCGCATGCGAAAGA
AAGATGAAGGAAGTTATGCTCTCGATGAACAAAAGAAACCCGCATCACCTTCTGCTTACC
AGTACTCACAGGGGCAGGAATACTACGCCTAGTCGAACTATAGAGCGAATGATGCGTGCC
AAGTTATCCATGTAAATAATATCTGCTCTTCACATTCAACTATCTACCTGTATTATCAGC
ACATATGTAGTGGATAGACAGCCAGTTTGACACCACCCTCTACATTAGGGTACATTGCTT
GTTCTGTATGGTAAGAGTTGGGAGAAAATGAGCTATTGCTCTGATTTTTATTGCCATCTG
GAACTTTATTATTATTATTACTTGTGTCCTACAACATTTTTTGTGTGGTTTTGTACAGTT
TTCCAGTCTAAAACTCGGTGCGTCACTTAAGTTCACAAATTTTCATATCTCAAGGTCCTA
ACCACATTTTGACGTAGCATTATTTGCTCATAATGTCCATTGTTGTTAAATGGTGCAAAC
ATTTCAAAGTTGCTGAGGCTGTTAAACAGTTGCTGATCTCCTTATACACTCGGTGCTAGT
ATTTTTACATTTTAAACACAGATAATTTAAAAACCATAATTTTTAACAATGTTAAAGCAT
AGGAAATGTATTTTTAAAGATTTCCCAGATTTTTATTGAATGTTTTCAATCAGCACATGA
TAATTGTTGCAAGGCCCTTCTTATGTAAGTGAAGCTCTTTCTAGTTGCGTTTTATCATTT
TTGTTGTTTTGATTTTTGTTTGTGGGATTAGAATCAAGATGTTTTCTCCTTAGATTTCAT
GGCCAGTGTTTCCTTTATTCGAAATTTACCGCAAAATCTAAACATTTTAAATGGTGATGA
AAACACTGGCCATGGAACATGTATTTAATCATCATTGTATGTAAAGTTATAACATACAGT
TGGTGGACATAGCGAACATTACGCTCCTTGTACAAAATACTCCAAGTGCATTCCTACACT
AAGTAACCCTCAAAAATATATCATTAATTATTAAGCTTTTTGCTTTTATCTGTTACAAAT
GTATCAGGTACAAATCGCAGCATGGTTTTGGTGCTTTAGCAAGCTCACGTAATGTCGTTA
TCAAACTGAACACGTATTGTACAAAGTAATACATTTTTTACAGT

InterProScan

PANTHER	Syndecan (IPR001050) - T[7-99] 4.6E-45 - T[101-216] 4.6E-45
PANTHER	Syndecan_inverte (IPR031198) - T[7-99] 4.6E-45 - T[101-216] 4.6E-45
Pfam	Syndecan/Neurexin_dom (IPR027789) - T[152-213] 5.1E-24
ProSitePatterns	Syndecan_CS (IPR030479) - T[182-192] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value