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TRANSCRIPT CARD

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  1. Clone 'cign062p23' > 
  2. Transcript 'KH2012:KH.C10.78.v1....' > 
  3. Transcript 'KH2012:KH.C1.1124.v1...' > 
  4. Transcript 'KH2012:KH.C3.101.v1....'

Transcript Model

Transcript Id

KH2012:KH.C3.101.v1.A.nonSL2-1

Possible name(s)

EXD1; EXOSC10

Gene model

KH2012:KH.C3.101

Location

KhC3 [3,160,660 / 3,168,225]

Sequences

Amino acid sequence

Length: 481

>KH.C3.101.v1.A.nonSL2-1
LVPLLSYKQSQLNCNSGNSAKNSLHCEMSVPAVKNEKNGKLGKNIKKPQLMFKDAVDNTH
ARFIPKISNKPNALKPLPKELVLLNSQDNISKNESNSLAISNLIHSEAVYDHPYQYELEN
FKPLSSQLEKPTPIKSGPVDTDSCIFVDGVNGLNMLIRELKQESEIAVDLEAHSFRSYQG
ITCLMQLSTRKTDYIVDTLALRANLNILNQVFTNPKIVKVFHGADQDIKWLQRDFGVYVV
NLFDTGQAARVLELGLSREYLLKHYCKVESDKKYQKADWRERPLSKDMLKYAQEDTHYLL
YIYDMMKLDLLEKAGGVGLMHKVIGNSRDICLLKYEKLIIDDTSHLKLLRKGAGKIEDWE
PQELEALRLIYMWRDELARQKDESCGYIMPNKMLVQIAKTLPQTVQDVRLQGVWQQYVPT
IHQLIVEARNKVFKSEPSSEPLHDSSNLGTTNDSKDPSTNKNFEIYLIIPILVAFAIYFF
F

Nucleotide sequence

Length: 1,960

>KH2012:KH.C3.101.v1.A.nonSL2-1
ATTGCCCTGTTTATGATTTCTTTTGGTTTGGTTAGAAACTCGTCAACAACATAGTCTGGA
GTGGACGTTACTTTGTCAAGGTTAGTTGGTACCCTTGCTTTCATACAAACAAAGTCAGTT
GAATTGTAACAGCGGGAATTCTGCCAAGAACAGTTTACATTGTGAAATGAGTGTCCCTGC
TGTGAAAAATGAAAAAAATGGAAAACTTGGAAAAAATATAAAGAAACCACAATTAATGTT
TAAAGATGCTGTAGATAACACTCATGCACGATTTATACCAAAGATATCAAACAAACCTAA
TGCATTAAAACCATTGCCAAAAGAACTGGTTCTTCTTAATTCACAAGACAACATAAGTAA
AAATGAAAGCAATTCACTGGCTATATCCAACCTTATACACTCCGAAGCAGTATACGACCA
TCCATATCAATATGAACTTGAAAATTTTAAGCCTTTATCCTCACAATTGGAAAAACCGAC
CCCCATCAAATCAGGCCCAGTAGATACGGATTCATGTATATTTGTTGATGGGGTAAATGG
ACTAAATATGTTAATAAGGGAGCTGAAGCAAGAATCAGAGATAGCTGTTGATTTGGAAGC
TCATTCATTCCGTTCCTATCAAGGAATAACTTGCCTAATGCAGTTGTCCACACGAAAAAC
AGATTACATTGTTGACACTCTTGCATTGAGGGCGAATTTAAATATTTTAAACCAAGTTTT
CACAAATCCAAAAATCGTGAAAGTTTTTCATGGAGCAGATCAAGATATTAAATGGTTACA
ACGAGACTTTGGGGTTTATGTTGTAAATCTGTTTGACACAGGTCAAGCAGCGAGAGTATT
AGAACTTGGATTATCTCGCGAATACCTTCTGAAACATTATTGTAAAGTGGAATCGGACAA
AAAGTACCAGAAAGCTGATTGGAGGGAAAGACCTTTATCCAAAGACATGCTTAAATATGC
ACAGGAAGACACTCATTACTTGTTATATATATACGACATGATGAAATTGGATCTTTTGGA
AAAAGCTGGGGGTGTCGGGTTAATGCATAAAGTAATTGGTAATAGCCGTGATATCTGTTT
ATTGAAATATGAAAAACTCATCATTGATGACACCTCGCATCTTAAACTGCTGAGAAAAGG
AGCGGGTAAAATAGAAGATTGGGAACCGCAGGAATTAGAAGCGTTAAGGTTGATATACAT
GTGGAGGGATGAGCTGGCAAGGCAGAAGGATGAGAGTTGCGGATATATAATGCCTAACAA
GATGCTGGTGCAAATAGCGAAGACATTGCCACAGACAGTACAGGATGTTCGACTACAAGG
TGTTTGGCAACAATATGTGCCGACTATCCATCAACTTATTGTTGAAGCACGAAATAAAGT
GTTCAAGTCAGAACCAAGCAGTGAACCTCTGCATGACAGCTCAAATTTGGGAACTACAAA
TGACAGCAAAGACCCTTCAACAAACAAAAACTTTGAAATCTACTTGATTATCCCTATTCT
TGTTGCTTTTGCCATTTACTTTTTTTTTTAGTATAGAAACAAACTCTAACTCTGAAACAT
CTAGCATGGAAATATATAAGGAGAAAATGCAGGGTTTAGAAAATGAGTTTCCTTTTCAAA
ACAACTGATTGTGGAAAGTTGACGGGTATATATTTTTAATGATTATCATATTAATATCGT
TTTATTCTTCCTTGTATTCTTAGCAGTAGGTTTATGCTTAGGTACAACTGTAGCGACCCG
TTGTCTTATCATACCACGCAAGTTCTATGGTCACCAATGTTGACTTTGTTGTTTGATGTT
GCCAGCCAACTTTTCCATTATCATGATATATTCGTTCAAACCGATATATTTTTAACGGGC
GCTACTGCGACCATCAGGTACAAATTTATTATGACGCTTTGTTAAAAACGTTTCAAACCT
GACGTTTACATGTTAAAACTTCAGTTTTTGATTTAAAGCA

InterProScan

SUPERFAMILY
RNaseH-like_sf (IPR012337) - T[45-342] 4.55E-77
SMART
3'-5'_exonuclease_dom (IPR002562) - T[144-311] 4.2E-43
Pfam
3'-5'_exonuclease_dom (IPR002562) - T[150-309] 1.0E-43
SUPERFAMILY
HRDC-like_sf (IPR010997) - T[340-437] 1.44E-17
ProSiteProfiles
HRDC_dom (IPR002121) - T[360-439] 12.63
SMART
HRDC_dom (IPR002121) - T[360-437] 2.4E-7
Pfam
HRDC_dom (IPR002121) - T[364-409] 3.2E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
EXOSX_HUMAN 46.117 % 359 2.64E-115