- Transcript 'KH2012:KH.L18.125.v2...' >
- Molecular Tool 'Hl-GATAa-WRPW' >
- Transcript 'Cisavi.CG.ENS81.R54....' >
- Transcript 'Haaura.CG.MTP2014.S6...' >
- Transcript 'KH2012:KH.C3.101.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.101.v1.A.nonSL4-1
Possible name(s)
EXD1; EXOSC10
Gene model
Location
KhC3 [3,160,660 / 3,168,206]
Amino acid sequence
Length: 481
>KH.C3.101.v1.A.nonSL4-1
LVPLLSYKQSQLNCNSGNSAKNSLHCEMSVPAVKNEKNGKLGKNIKKPQLMFKDAVDNTH
ARFIPKISNKPNALKPLPKELVLLNSQDNISKNESNSLAISNLIHSEAVYDHPYQYELEN
FKPLSSQLEKPTPIKSGPVDTDSCIFVDGVNGLNMLIRELKQESEIAVDLEAHSFRSYQG
ITCLMQLSTRKTDYIVDTLALRANLNILNQVFTNPKIVKVFHGADQDIKWLQRDFGVYVV
NLFDTGQAARVLELGLSREYLLKHYCKVESDKKYQKADWRERPLSKDMLKYAQEDTHYLL
YIYDMMKLDLLEKAGGVGLMHKVIGNSRDICLLKYEKLIIDDTSHLKLLRKGAGKIEDWE
PQELEALRLIYMWRDELARQKDESCGYIMPNKMLVQIAKTLPQTVQDVRLQGVWQQYVPT
IHQLIVEARNKVFKSEPSSEPLHDSSNLGTTNDSKDPSTNKNFEIYLIIPILVAFAIYFF
F
Nucleotide sequence
Length: 1,941
>KH2012:KH.C3.101.v1.A.nonSL4-1
CTTTTGGTTTGGTTAGAAACTCGTCAACAACATAGTCTGGAGTGGACGTTACTTTGTCAA
GGTTAGTTGGTACCCTTGCTTTCATACAAACAAAGTCAGTTGAATTGTAACAGCGGGAAT
TCTGCCAAGAACAGTTTACATTGTGAAATGAGTGTCCCTGCTGTGAAAAATGAAAAAAAT
GGAAAACTTGGAAAAAATATAAAGAAACCACAATTAATGTTTAAAGATGCTGTAGATAAC
ACTCATGCACGATTTATACCAAAGATATCAAACAAACCTAATGCATTAAAACCATTGCCA
AAAGAACTGGTTCTTCTTAATTCACAAGACAACATAAGTAAAAATGAAAGCAATTCACTG
GCTATATCCAACCTTATACACTCCGAAGCAGTATACGACCATCCATATCAATATGAACTT
GAAAATTTTAAGCCTTTATCCTCACAATTGGAAAAACCGACCCCCATCAAATCAGGCCCA
GTAGATACGGATTCATGTATATTTGTTGATGGGGTAAATGGACTAAATATGTTAATAAGG
GAGCTGAAGCAAGAATCAGAGATAGCTGTTGATTTGGAAGCTCATTCATTCCGTTCCTAT
CAAGGAATAACTTGCCTAATGCAGTTGTCCACACGAAAAACAGATTACATTGTTGACACT
CTTGCATTGAGGGCGAATTTAAATATTTTAAACCAAGTTTTCACAAATCCAAAAATCGTG
AAAGTTTTTCATGGAGCAGATCAAGATATTAAATGGTTACAACGAGACTTTGGGGTTTAT
GTTGTAAATCTGTTTGACACAGGTCAAGCAGCGAGAGTATTAGAACTTGGATTATCTCGC
GAATACCTTCTGAAACATTATTGTAAAGTGGAATCGGACAAAAAGTACCAGAAAGCTGAT
TGGAGGGAAAGACCTTTATCCAAAGACATGCTTAAATATGCACAGGAAGACACTCATTAC
TTGTTATATATATACGACATGATGAAATTGGATCTTTTGGAAAAAGCTGGGGGTGTCGGG
TTAATGCATAAAGTAATTGGTAATAGCCGTGATATCTGTTTATTGAAATATGAAAAACTC
ATCATTGATGACACCTCGCATCTTAAACTGCTGAGAAAAGGAGCGGGTAAAATAGAAGAT
TGGGAACCGCAGGAATTAGAAGCGTTAAGGTTGATATACATGTGGAGGGATGAGCTGGCA
AGGCAGAAGGATGAGAGTTGCGGATATATAATGCCTAACAAGATGCTGGTGCAAATAGCG
AAGACATTGCCACAGACAGTACAGGATGTTCGACTACAAGGTGTTTGGCAACAATATGTG
CCGACTATCCATCAACTTATTGTTGAAGCACGAAATAAAGTGTTCAAGTCAGAACCAAGC
AGTGAACCTCTGCATGACAGCTCAAATTTGGGAACTACAAATGACAGCAAAGACCCTTCA
ACAAACAAAAACTTTGAAATCTACTTGATTATCCCTATTCTTGTTGCTTTTGCCATTTAC
TTTTTTTTTTAGTATAGAAACAAACTCTAACTCTGAAACATCTAGCATGGAAATATATAA
GGAGAAAATGCAGGGTTTAGAAAATGAGTTTCCTTTTCAAAACAACTGATTGTGGAAAGT
TGACGGGTATATATTTTTAATGATTATCATATTAATATCGTTTTATTCTTCCTTGTATTC
TTAGCAGTAGGTTTATGCTTAGGTACAACTGTAGCGACCCGTTGTCTTATCATACCACGC
AAGTTCTATGGTCACCAATGTTGACTTTGTTGTTTGATGTTGCCAGCCAACTTTTCCATT
ATCATGATATATTCGTTCAAACCGATATATTTTTAACGGGCGCTACTGCGACCATCAGGT
ACAAATTTATTATGACGCTTTGTTAAAAACGTTTCAAACCTGACGTTTACATGTTAAAAC
TTCAGTTTTTGATTTAAAGCA
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[45-342] 4.55E-77 |
| SMART |
3'-5'_exonuclease_dom (IPR002562) - T[144-311] 4.2E-43 |
| Pfam |
3'-5'_exonuclease_dom (IPR002562) - T[150-309] 1.0E-43 |
| SUPERFAMILY |
HRDC-like_sf (IPR010997) - T[340-437] 1.44E-17 |
| ProSiteProfiles |
HRDC_dom (IPR002121) - T[360-439] 12.63 |
| SMART |
HRDC_dom (IPR002121) - T[360-437] 2.4E-7 |
| Pfam |
HRDC_dom (IPR002121) - T[364-409] 3.2E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| EXOSX_HUMAN | 46.117 % | 359 | 2.64E-115 |