- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S7...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C1.144.v1....' >
- Transcript 'KH2012:KH.C3.101.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.101.v1.A.nonSL9-1
Possible name(s)
EXD1; EXOSC10
Gene model
Location
KhC3 [3,160,660 / 3,168,228]
Amino acid sequence
Length: 481
>KH.C3.101.v1.A.nonSL9-1
LVPLLSYKQSQLNCNSGNSAKNSLHCEMSVPAVKNEKNGKLGKNIKKPQLMFKDAVDNTH
ARFIPKISNKPNALKPLPKELVLLNSQDNISKNESNSLAISNLIHSEAVYDHPYQYELEN
FKPLSSQLEKPTPIKSGPVDTDSCIFVDGVNGLNMLIRELKQESEIAVDLEAHSFRSYQG
ITCLMQLSTRKTDYIVDTLALRANLNILNQVFTNPKIVKVFHGADQDIKWLQRDFGVYVV
NLFDTGQAARVLELGLSREYLLKHYCKVESDKKYQKADWRERPLSKDMLKYAQEDTHYLL
YIYDMMKLDLLEKAGGVGLMHKVIGNSRDICLLKYEKLIIDDTSHLKLLRKGAGKIEDWE
PQELEALRLIYMWRDELARQKDESCGYIMPNKMLVQIAKTLPQTVQDVRLQGVWQQYVPT
IHQLIVEARNKVFKSEPSSEPLHDSSNLGTTNDSKDPSTNKNFEIYLIIPILVAFAIYFF
F
Nucleotide sequence
Length: 1,963
>KH2012:KH.C3.101.v1.A.nonSL9-1
ATTATTGCCCTGTTTATGATTTCTTTTGGTTTGGTTAGAAACTCGTCAACAACATAGTCT
GGAGTGGACGTTACTTTGTCAAGGTTAGTTGGTACCCTTGCTTTCATACAAACAAAGTCA
GTTGAATTGTAACAGCGGGAATTCTGCCAAGAACAGTTTACATTGTGAAATGAGTGTCCC
TGCTGTGAAAAATGAAAAAAATGGAAAACTTGGAAAAAATATAAAGAAACCACAATTAAT
GTTTAAAGATGCTGTAGATAACACTCATGCACGATTTATACCAAAGATATCAAACAAACC
TAATGCATTAAAACCATTGCCAAAAGAACTGGTTCTTCTTAATTCACAAGACAACATAAG
TAAAAATGAAAGCAATTCACTGGCTATATCCAACCTTATACACTCCGAAGCAGTATACGA
CCATCCATATCAATATGAACTTGAAAATTTTAAGCCTTTATCCTCACAATTGGAAAAACC
GACCCCCATCAAATCAGGCCCAGTAGATACGGATTCATGTATATTTGTTGATGGGGTAAA
TGGACTAAATATGTTAATAAGGGAGCTGAAGCAAGAATCAGAGATAGCTGTTGATTTGGA
AGCTCATTCATTCCGTTCCTATCAAGGAATAACTTGCCTAATGCAGTTGTCCACACGAAA
AACAGATTACATTGTTGACACTCTTGCATTGAGGGCGAATTTAAATATTTTAAACCAAGT
TTTCACAAATCCAAAAATCGTGAAAGTTTTTCATGGAGCAGATCAAGATATTAAATGGTT
ACAACGAGACTTTGGGGTTTATGTTGTAAATCTGTTTGACACAGGTCAAGCAGCGAGAGT
ATTAGAACTTGGATTATCTCGCGAATACCTTCTGAAACATTATTGTAAAGTGGAATCGGA
CAAAAAGTACCAGAAAGCTGATTGGAGGGAAAGACCTTTATCCAAAGACATGCTTAAATA
TGCACAGGAAGACACTCATTACTTGTTATATATATACGACATGATGAAATTGGATCTTTT
GGAAAAAGCTGGGGGTGTCGGGTTAATGCATAAAGTAATTGGTAATAGCCGTGATATCTG
TTTATTGAAATATGAAAAACTCATCATTGATGACACCTCGCATCTTAAACTGCTGAGAAA
AGGAGCGGGTAAAATAGAAGATTGGGAACCGCAGGAATTAGAAGCGTTAAGGTTGATATA
CATGTGGAGGGATGAGCTGGCAAGGCAGAAGGATGAGAGTTGCGGATATATAATGCCTAA
CAAGATGCTGGTGCAAATAGCGAAGACATTGCCACAGACAGTACAGGATGTTCGACTACA
AGGTGTTTGGCAACAATATGTGCCGACTATCCATCAACTTATTGTTGAAGCACGAAATAA
AGTGTTCAAGTCAGAACCAAGCAGTGAACCTCTGCATGACAGCTCAAATTTGGGAACTAC
AAATGACAGCAAAGACCCTTCAACAAACAAAAACTTTGAAATCTACTTGATTATCCCTAT
TCTTGTTGCTTTTGCCATTTACTTTTTTTTTTAGTATAGAAACAAACTCTAACTCTGAAA
CATCTAGCATGGAAATATATAAGGAGAAAATGCAGGGTTTAGAAAATGAGTTTCCTTTTC
AAAACAACTGATTGTGGAAAGTTGACGGGTATATATTTTTAATGATTATCATATTAATAT
CGTTTTATTCTTCCTTGTATTCTTAGCAGTAGGTTTATGCTTAGGTACAACTGTAGCGAC
CCGTTGTCTTATCATACCACGCAAGTTCTATGGTCACCAATGTTGACTTTGTTGTTTGAT
GTTGCCAGCCAACTTTTCCATTATCATGATATATTCGTTCAAACCGATATATTTTTAACG
GGCGCTACTGCGACCATCAGGTACAAATTTATTATGACGCTTTGTTAAAAACGTTTCAAA
CCTGACGTTTACATGTTAAAACTTCAGTTTTTGATTTAAAGCA
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[45-342] 4.55E-77 |
| SMART |
3'-5'_exonuclease_dom (IPR002562) - T[144-311] 4.2E-43 |
| Pfam |
3'-5'_exonuclease_dom (IPR002562) - T[150-309] 1.0E-43 |
| SUPERFAMILY |
HRDC-like_sf (IPR010997) - T[340-437] 1.44E-17 |
| ProSiteProfiles |
HRDC_dom (IPR002121) - T[360-439] 12.63 |
| SMART |
HRDC_dom (IPR002121) - T[360-437] 2.4E-7 |
| Pfam |
HRDC_dom (IPR002121) - T[364-409] 3.2E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| EXOSX_HUMAN | 46.117 % | 359 | 2.64E-115 |