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TRANSCRIPT CARD

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  1. Region 'REG00000235' > 
  2. Transcript 'KH2012:KH.C2.257.v2....' > 
  3. Transcript 'Phfumi.CG.MTP2014.S4...' > 
  4. Clone 'cibd047j06' > 
  5. Transcript 'KH2012:KH.C3.101.v2....'

Transcript Model

Transcript Id

KH2012:KH.C3.101.v2.A.nonSL6-1

Possible name(s)

EXD1; EXOSC10

Gene model

KH2012:KH.C3.101

Location

KhC3 [3,160,660 / 3,168,190]

Sequences

Amino acid sequence

Length: 394

>KH.C3.101.v2.A.nonSL6-1
DNISKNESNSLAISNLIHSEAVYDHPYQYELENFKPLSSQLEKPTPIKSGPVDTDSCIFV
DGVNGLNMLIRELKQESEIAVDLEAHSFRSYQGITCLMQLSTRKTDYIVDTLALRANLNI
LNQVFTNPKIVKVFHGADQDIKWLQRDFGVYVVNLFDTGQAARVLELGLSREYLLKHYCK
VESDKKYQKADWRERPLSKDMLKYAQEDTHYLLYIYDMMKLDLLEKAGGVGLMHKVIGNS
RDICLLKYEKLIIDDTSHLKLLRKGAGKIEDWEPQELEALRLIYMWRDELARQKDESCGY
IMPNKMLVQIAKTLPQTVQDVRLQGVWQQYVPTIHQLIVEARNKVFKSEPSSEPLHDSSN
LGTTNDSKDPSTNKNFEIYLIIPILVAFAIYFFF

Nucleotide sequence

Length: 1,749

>KH2012:KH.C3.101.v2.A.nonSL6-1
AAACTCGTCAACAACATAGTCTGGAGTGGACGTTACTTTGTCAAGGTTAGTTGGTACCCT
TGCTTTCATACAAACAAAGTCAGTTGAATTGTAACAGCGGGAATTCTGCCAAGAACAGTT
TACATTGTGAAATGAGACAACATAAGTAAAAATGAAAGCAATTCACTGGCTATATCCAAC
CTTATACACTCCGAAGCAGTATACGACCATCCATATCAATATGAACTTGAAAATTTTAAG
CCTTTATCCTCACAATTGGAAAAACCGACCCCCATCAAATCAGGCCCAGTAGATACGGAT
TCATGTATATTTGTTGATGGGGTAAATGGACTAAATATGTTAATAAGGGAGCTGAAGCAA
GAATCAGAGATAGCTGTTGATTTGGAAGCTCATTCATTCCGTTCCTATCAAGGAATAACT
TGCCTAATGCAGTTGTCCACACGAAAAACAGATTACATTGTTGACACTCTTGCATTGAGG
GCGAATTTAAATATTTTAAACCAAGTTTTCACAAATCCAAAAATCGTGAAAGTTTTTCAT
GGAGCAGATCAAGATATTAAATGGTTACAACGAGACTTTGGGGTTTATGTTGTAAATCTG
TTTGACACAGGTCAAGCAGCGAGAGTATTAGAACTTGGATTATCTCGCGAATACCTTCTG
AAACATTATTGTAAAGTGGAATCGGACAAAAAGTACCAGAAAGCTGATTGGAGGGAAAGA
CCTTTATCCAAAGACATGCTTAAATATGCACAGGAAGACACTCATTACTTGTTATATATA
TACGACATGATGAAATTGGATCTTTTGGAAAAAGCTGGGGGTGTCGGGTTAATGCATAAA
GTAATTGGTAATAGCCGTGATATCTGTTTATTGAAATATGAAAAACTCATCATTGATGAC
ACCTCGCATCTTAAACTGCTGAGAAAAGGAGCGGGTAAAATAGAAGATTGGGAACCGCAG
GAATTAGAAGCGTTAAGGTTGATATACATGTGGAGGGATGAGCTGGCAAGGCAGAAGGAT
GAGAGTTGCGGATATATAATGCCTAACAAGATGCTGGTGCAAATAGCGAAGACATTGCCA
CAGACAGTACAGGATGTTCGACTACAAGGTGTTTGGCAACAATATGTGCCGACTATCCAT
CAACTTATTGTTGAAGCACGAAATAAAGTGTTCAAGTCAGAACCAAGCAGTGAACCTCTG
CATGACAGCTCAAATTTGGGAACTACAAATGACAGCAAAGACCCTTCAACAAACAAAAAC
TTTGAAATCTACTTGATTATCCCTATTCTTGTTGCTTTTGCCATTTACTTTTTTTTTTAG
TATAGAAACAAACTCTAACTCTGAAACATCTAGCATGGAAATATATAAGGAGAAAATGCA
GGGTTTAGAAAATGAGTTTCCTTTTCAAAACAACTGATTGTGGAAAGTTGACGGGTATAT
ATTTTTAATGATTATCATATTAATATCGTTTTATTCTTCCTTGTATTCTTAGCAGTAGGT
TTATGCTTAGGTACAACTGTAGCGACCCGTTGTCTTATCATACCACGCAAGTTCTATGGT
CACCAATGTTGACTTTGTTGTTTGATGTTGCCAGCCAACTTTTCCATTATCATGATATAT
TCGTTCAAACCGATATATTTTTAACGGGCGCTACTGCGACCATCAGGTACAAATTTATTA
TGACGCTTTGTTAAAAACGTTTCAAACCTGACGTTTACATGTTAAAACTTCAGTTTTTGA
TTTAAAGCA

InterProScan

SUPERFAMILY
RNaseH-like_sf (IPR012337) - T[22-255] 3.58E-73
SMART
3'-5'_exonuclease_dom (IPR002562) - T[57-224] 4.2E-43
Pfam
3'-5'_exonuclease_dom (IPR002562) - T[63-222] 6.6E-44
SUPERFAMILY
HRDC-like_sf (IPR010997) - T[253-350] 1.02E-17
SMART
HRDC_dom (IPR002121) - T[273-350] 2.4E-7
ProSiteProfiles
HRDC_dom (IPR002121) - T[273-352] 12.63
Pfam
HRDC_dom (IPR002121) - T[277-322] 2.4E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
EXOSX_HUMAN 47.309 % 321 3.92E-102