- Transcript 'KH2012:KH.C5.109.v3....' >
- EST 'AV678159' >
- Clone 'citb012j24' >
- Transcript 'KH2012:KH.C14.133.v2...' >
- Transcript 'KH2012:KH.C3.101.v2....'
Transcript Model
Transcript Id
KH2012:KH.C3.101.v2.R.ND1-1
Possible name(s)
EXD1; EXOSC10
Gene model
Location
KhC3 [3,160,660 / 3,168,212]
Amino acid sequence
Length: 394
>KH.C3.101.v2.R.ND1-1
DNISKNESNSLAISNLIHSEAVYDHPYQYELENFKPLSSQLEKPTPIKSGPVDTDSCIFV
DGVNGLNMLIRELKQESEIAVDLEAHSFRSYQGITCLMQLSTRKTDYIVDTLALRANLNI
LNQVFTNPKIVKVFHGADQDIKWLQRDFGVYVVNLFDTGQAARVLELGLSREYLLKHYCK
VESDKKYQKADWRERPLSKDMLKYAQEDTHYLLYIYDMMKLDLLEKAGGVGLMHKVIGNS
RDICLLKYEKLIIDDTSHLKLLRKGAGKIEDWEPQELEALRLIYMWRDELARQKDESCGY
IMPNKMLVQIAKTLPQTVQDVRLQGVWQQYVPTIHQLIVEARNKVFKSEPSSEPLHDSSN
LGTTNDSKDPSTNKNFEIYLIIPILVAFAIYFFF
Nucleotide sequence
Length: 1,771
>KH2012:KH.C3.101.v2.R.ND1-1
TGATTTCTTTTGGTTTGGTTAGAAACTCGTCAACAACATAGTCTGGAGTGGACGTTACTT
TGTCAAGGTTAGTTGGTACCCTTGCTTTCATACAAACAAAGTCAGTTGAATTGTAACAGC
GGGAATTCTGCCAAGAACAGTTTACATTGTGAAATGAGACAACATAAGTAAAAATGAAAG
CAATTCACTGGCTATATCCAACCTTATACACTCCGAAGCAGTATACGACCATCCATATCA
ATATGAACTTGAAAATTTTAAGCCTTTATCCTCACAATTGGAAAAACCGACCCCCATCAA
ATCAGGCCCAGTAGATACGGATTCATGTATATTTGTTGATGGGGTAAATGGACTAAATAT
GTTAATAAGGGAGCTGAAGCAAGAATCAGAGATAGCTGTTGATTTGGAAGCTCATTCATT
CCGTTCCTATCAAGGAATAACTTGCCTAATGCAGTTGTCCACACGAAAAACAGATTACAT
TGTTGACACTCTTGCATTGAGGGCGAATTTAAATATTTTAAACCAAGTTTTCACAAATCC
AAAAATCGTGAAAGTTTTTCATGGAGCAGATCAAGATATTAAATGGTTACAACGAGACTT
TGGGGTTTATGTTGTAAATCTGTTTGACACAGGTCAAGCAGCGAGAGTATTAGAACTTGG
ATTATCTCGCGAATACCTTCTGAAACATTATTGTAAAGTGGAATCGGACAAAAAGTACCA
GAAAGCTGATTGGAGGGAAAGACCTTTATCCAAAGACATGCTTAAATATGCACAGGAAGA
CACTCATTACTTGTTATATATATACGACATGATGAAATTGGATCTTTTGGAAAAAGCTGG
GGGTGTCGGGTTAATGCATAAAGTAATTGGTAATAGCCGTGATATCTGTTTATTGAAATA
TGAAAAACTCATCATTGATGACACCTCGCATCTTAAACTGCTGAGAAAAGGAGCGGGTAA
AATAGAAGATTGGGAACCGCAGGAATTAGAAGCGTTAAGGTTGATATACATGTGGAGGGA
TGAGCTGGCAAGGCAGAAGGATGAGAGTTGCGGATATATAATGCCTAACAAGATGCTGGT
GCAAATAGCGAAGACATTGCCACAGACAGTACAGGATGTTCGACTACAAGGTGTTTGGCA
ACAATATGTGCCGACTATCCATCAACTTATTGTTGAAGCACGAAATAAAGTGTTCAAGTC
AGAACCAAGCAGTGAACCTCTGCATGACAGCTCAAATTTGGGAACTACAAATGACAGCAA
AGACCCTTCAACAAACAAAAACTTTGAAATCTACTTGATTATCCCTATTCTTGTTGCTTT
TGCCATTTACTTTTTTTTTTAGTATAGAAACAAACTCTAACTCTGAAACATCTAGCATGG
AAATATATAAGGAGAAAATGCAGGGTTTAGAAAATGAGTTTCCTTTTCAAAACAACTGAT
TGTGGAAAGTTGACGGGTATATATTTTTAATGATTATCATATTAATATCGTTTTATTCTT
CCTTGTATTCTTAGCAGTAGGTTTATGCTTAGGTACAACTGTAGCGACCCGTTGTCTTAT
CATACCACGCAAGTTCTATGGTCACCAATGTTGACTTTGTTGTTTGATGTTGCCAGCCAA
CTTTTCCATTATCATGATATATTCGTTCAAACCGATATATTTTTAACGGGCGCTACTGCG
ACCATCAGGTACAAATTTATTATGACGCTTTGTTAAAAACGTTTCAAACCTGACGTTTAC
ATGTTAAAACTTCAGTTTTTGATTTAAAGCA
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[22-255] 3.58E-73 |
| SMART |
3'-5'_exonuclease_dom (IPR002562) - T[57-224] 4.2E-43 |
| Pfam |
3'-5'_exonuclease_dom (IPR002562) - T[63-222] 6.6E-44 |
| SUPERFAMILY |
HRDC-like_sf (IPR010997) - T[253-350] 1.02E-17 |
| SMART |
HRDC_dom (IPR002121) - T[273-350] 2.4E-7 |
| ProSiteProfiles |
HRDC_dom (IPR002121) - T[273-352] 12.63 |
| Pfam |
HRDC_dom (IPR002121) - T[277-322] 2.4E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| EXOSX_HUMAN | 47.309 % | 321 | 3.92E-102 |