- Transcript 'KH2012:KH.L4.55.v1.A...' >
- Transcript 'KH2012:KH.L154.21.v1...' >
- Transcript 'KH2012:KH.C9.38.v11....' >
- Transcript 'KH2012:KH.C5.76.v1.A...' >
- Transcript 'KH2012:KH.C3.101.v3....'
Transcript Model
Transcript Id
KH2012:KH.C3.101.v3.A.SL5-1
Possible name(s)
EXD1; EXOSC10
Gene model
Location
KhC3 [3,160,660 / 3,164,692]
Amino acid sequence
Length: 346
>KH.C3.101.v3.A.SL5-1
SGPVDTDSCIFVDGVNGLNMLIRELKQESEIAVDLEAHSFRSYQGITCLMQLSTRKTDYI
VDTLALRANLNILNQVFTNPKIVKVFHGADQDIKWLQRDFGVYVVNLFDTGQAARVLELG
LSREYLLKHYCKVESDKKYQKADWRERPLSKDMLKYAQEDTHYLLYIYDMMKLDLLEKAG
GVGLMHKVIGNSRDICLLKYEKLIIDDTSHLKLLRKGAGKIEDWEPQELEALRLIYMWRD
ELARQKDESCGYIMPNKMLVQIAKTLPQTVQDVRLQGVWQQYVPTIHQLIVEARNKVFKS
EPSSEPLHDSSNLGTTNDSKDPSTNKNFEIYLIIPILVAFAIYFFF
Nucleotide sequence
Length: 1,471
>KH2012:KH.C3.101.v3.A.SL5-1
ATCAGGCCCAGTAGATACGGATTCATGTATATTTGTTGATGGGGTAAATGGACTAAATAT
GTTAATAAGGGAGCTGAAGCAAGAATCAGAGATAGCTGTTGATTTGGAAGCTCATTCATT
CCGTTCCTATCAAGGAATAACTTGCCTAATGCAGTTGTCCACACGAAAAACAGATTACAT
TGTTGACACTCTTGCATTGAGGGCGAATTTAAATATTTTAAACCAAGTTTTCACAAATCC
AAAAATCGTGAAAGTTTTTCATGGAGCAGATCAAGATATTAAATGGTTACAACGAGACTT
TGGGGTTTATGTTGTAAATCTGTTTGACACAGGTCAAGCAGCGAGAGTATTAGAACTTGG
ATTATCTCGCGAATACCTTCTGAAACATTATTGTAAAGTGGAATCGGACAAAAAGTACCA
GAAAGCTGATTGGAGGGAAAGACCTTTATCCAAAGACATGCTTAAATATGCACAGGAAGA
CACTCATTACTTGTTATATATATACGACATGATGAAATTGGATCTTTTGGAAAAAGCTGG
GGGTGTCGGGTTAATGCATAAAGTAATTGGTAATAGCCGTGATATCTGTTTATTGAAATA
TGAAAAACTCATCATTGATGACACCTCGCATCTTAAACTGCTGAGAAAAGGAGCGGGTAA
AATAGAAGATTGGGAACCGCAGGAATTAGAAGCGTTAAGGTTGATATACATGTGGAGGGA
TGAGCTGGCAAGGCAGAAGGATGAGAGTTGCGGATATATAATGCCTAACAAGATGCTGGT
GCAAATAGCGAAGACATTGCCACAGACAGTACAGGATGTTCGACTACAAGGTGTTTGGCA
ACAATATGTGCCGACTATCCATCAACTTATTGTTGAAGCACGAAATAAAGTGTTCAAGTC
AGAACCAAGCAGTGAACCTCTGCATGACAGCTCAAATTTGGGAACTACAAATGACAGCAA
AGACCCTTCAACAAACAAAAACTTTGAAATCTACTTGATTATCCCTATTCTTGTTGCTTT
TGCCATTTACTTTTTTTTTTAGTATAGAAACAAACTCTAACTCTGAAACATCTAGCATGG
AAATATATAAGGAGAAAATGCAGGGTTTAGAAAATGAGTTTCCTTTTCAAAACAACTGAT
TGTGGAAAGTTGACGGGTATATATTTTTAATGATTATCATATTAATATCGTTTTATTCTT
CCTTGTATTCTTAGCAGTAGGTTTATGCTTAGGTACAACTGTAGCGACCCGTTGTCTTAT
CATACCACGCAAGTTCTATGGTCACCAATGTTGACTTTGTTGTTTGATGTTGCCAGCCAA
CTTTTCCATTATCATGATATATTCGTTCAAACCGATATATTTTTAACGGGCGCTACTGCG
ACCATCAGGTACAAATTTATTATGACGCTTTGTTAAAAACGTTTCAAACCTGACGTTTAC
ATGTTAAAACTTCAGTTTTTGATTTAAAGCA
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[4-207] 4.84E-68 |
| SMART |
3'-5'_exonuclease_dom (IPR002562) - T[9-176] 4.2E-43 |
| Pfam |
3'-5'_exonuclease_dom (IPR002562) - T[15-174] 4.8E-44 |
| SUPERFAMILY |
HRDC-like_sf (IPR010997) - T[205-302] 8.07E-18 |
| SMART |
HRDC_dom (IPR002121) - T[225-302] 2.4E-7 |
| ProSiteProfiles |
HRDC_dom (IPR002121) - T[225-304] 12.63 |
| Pfam |
HRDC_dom (IPR002121) - T[229-274] 2.0E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| EXOSX_HUMAN | 49.186 % | 294 | 1.67E-92 |