Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Haaura.CG.MTP2014.S5...' > 
  2. Transcript 'KH2012:KH.C4.686.v1....' > 
  3. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  4. Clone 'cigd022k13' > 
  5. Transcript 'KH2012:KH.C3.101.v3....'

Transcript Model

Transcript Id

KH2012:KH.C3.101.v3.A.SL5-1

Possible name(s)

EXD1; EXOSC10

Gene model

KH2012:KH.C3.101

Location

KhC3 [3,160,660 / 3,164,692]

Sequences

Amino acid sequence

Length: 346

>KH.C3.101.v3.A.SL5-1
SGPVDTDSCIFVDGVNGLNMLIRELKQESEIAVDLEAHSFRSYQGITCLMQLSTRKTDYI
VDTLALRANLNILNQVFTNPKIVKVFHGADQDIKWLQRDFGVYVVNLFDTGQAARVLELG
LSREYLLKHYCKVESDKKYQKADWRERPLSKDMLKYAQEDTHYLLYIYDMMKLDLLEKAG
GVGLMHKVIGNSRDICLLKYEKLIIDDTSHLKLLRKGAGKIEDWEPQELEALRLIYMWRD
ELARQKDESCGYIMPNKMLVQIAKTLPQTVQDVRLQGVWQQYVPTIHQLIVEARNKVFKS
EPSSEPLHDSSNLGTTNDSKDPSTNKNFEIYLIIPILVAFAIYFFF

Nucleotide sequence

Length: 1,471

>KH2012:KH.C3.101.v3.A.SL5-1
ATCAGGCCCAGTAGATACGGATTCATGTATATTTGTTGATGGGGTAAATGGACTAAATAT
GTTAATAAGGGAGCTGAAGCAAGAATCAGAGATAGCTGTTGATTTGGAAGCTCATTCATT
CCGTTCCTATCAAGGAATAACTTGCCTAATGCAGTTGTCCACACGAAAAACAGATTACAT
TGTTGACACTCTTGCATTGAGGGCGAATTTAAATATTTTAAACCAAGTTTTCACAAATCC
AAAAATCGTGAAAGTTTTTCATGGAGCAGATCAAGATATTAAATGGTTACAACGAGACTT
TGGGGTTTATGTTGTAAATCTGTTTGACACAGGTCAAGCAGCGAGAGTATTAGAACTTGG
ATTATCTCGCGAATACCTTCTGAAACATTATTGTAAAGTGGAATCGGACAAAAAGTACCA
GAAAGCTGATTGGAGGGAAAGACCTTTATCCAAAGACATGCTTAAATATGCACAGGAAGA
CACTCATTACTTGTTATATATATACGACATGATGAAATTGGATCTTTTGGAAAAAGCTGG
GGGTGTCGGGTTAATGCATAAAGTAATTGGTAATAGCCGTGATATCTGTTTATTGAAATA
TGAAAAACTCATCATTGATGACACCTCGCATCTTAAACTGCTGAGAAAAGGAGCGGGTAA
AATAGAAGATTGGGAACCGCAGGAATTAGAAGCGTTAAGGTTGATATACATGTGGAGGGA
TGAGCTGGCAAGGCAGAAGGATGAGAGTTGCGGATATATAATGCCTAACAAGATGCTGGT
GCAAATAGCGAAGACATTGCCACAGACAGTACAGGATGTTCGACTACAAGGTGTTTGGCA
ACAATATGTGCCGACTATCCATCAACTTATTGTTGAAGCACGAAATAAAGTGTTCAAGTC
AGAACCAAGCAGTGAACCTCTGCATGACAGCTCAAATTTGGGAACTACAAATGACAGCAA
AGACCCTTCAACAAACAAAAACTTTGAAATCTACTTGATTATCCCTATTCTTGTTGCTTT
TGCCATTTACTTTTTTTTTTAGTATAGAAACAAACTCTAACTCTGAAACATCTAGCATGG
AAATATATAAGGAGAAAATGCAGGGTTTAGAAAATGAGTTTCCTTTTCAAAACAACTGAT
TGTGGAAAGTTGACGGGTATATATTTTTAATGATTATCATATTAATATCGTTTTATTCTT
CCTTGTATTCTTAGCAGTAGGTTTATGCTTAGGTACAACTGTAGCGACCCGTTGTCTTAT
CATACCACGCAAGTTCTATGGTCACCAATGTTGACTTTGTTGTTTGATGTTGCCAGCCAA
CTTTTCCATTATCATGATATATTCGTTCAAACCGATATATTTTTAACGGGCGCTACTGCG
ACCATCAGGTACAAATTTATTATGACGCTTTGTTAAAAACGTTTCAAACCTGACGTTTAC
ATGTTAAAACTTCAGTTTTTGATTTAAAGCA

InterProScan

SUPERFAMILY
RNaseH-like_sf (IPR012337) - T[4-207] 4.84E-68
SMART
3'-5'_exonuclease_dom (IPR002562) - T[9-176] 4.2E-43
Pfam
3'-5'_exonuclease_dom (IPR002562) - T[15-174] 4.8E-44
SUPERFAMILY
HRDC-like_sf (IPR010997) - T[205-302] 8.07E-18
SMART
HRDC_dom (IPR002121) - T[225-302] 2.4E-7
ProSiteProfiles
HRDC_dom (IPR002121) - T[225-304] 12.63
Pfam
HRDC_dom (IPR002121) - T[229-274] 2.0E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
EXOSX_HUMAN 49.186 % 294 1.67E-92