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  1. Transcript 'Cisavi.CG.ENS81.R0.1...'
  2. Transcript 'KH2012:KH.C8.229.v1....'
  3. Transcript 'Haaura.CG.MTP2014.S9...'
  4. Clone 'cima833e22'
  5. Transcript 'KH2012:KH.C3.13.v1.R...'

Transcript Model

Transcript Id

KH2012:KH.C3.13.v1.R.ND1-1

Possible name(s)

CRIM1; FRAS1; SPON1

Location

KhC3 [621,692 / 628,603]

Sequences

Amino acid sequence

Length: 613

>KH.C3.13.v1.R.ND1-1
HLNIMIECLLSSKTATSGVRTVTSQWLLLLSIALVVQNTLGGIVRRSTDDDSYLPGLMDV
NLDVGTDIEANREPGNHHHRHHNRHHGPGNFTNVRVGHQHSEAERIAGVSFAEMCESGQM
EDQDTTTWSNVQCQNCSCEASVVVCRPNVCPNLPCGQPVTVQGQCCPVCPDKVCQAADGR
RFTEGAEWYLDDCTYCECKQGRALCSVEDCEYKSCENPVKVPGECCPICADASCHADSGR
NLSAGAVWKEGLCTHCYCRTGDQACAQEKCPQINCTHPYRRPNECCYTCQDAVECIVSTW
GTWGECPIQECGGGKRRRYRGVVIPPRNGGAFCPHMSEAQECPRQPCSDIPVCPTTEWGS
WSHCTATCGKGRRLRMRERAKVTRETMTSLIDCSQTHMQETMLCYTGTCNLSPILLDSAR
LEQEERCPGVYWSEWGPCSKSCGRGTRLRNQVLRNSSESIEGACRLLRELKECHGRNCTG
TADSPINCKVTHWSPWTVCSATCGETAAKSRHRTIIRHPSPGGRACPHLTVSKKCKLDPC
LTLRSLIRTQPSPHACVSDDGLTHYAENERWTPEECKTCVCMNSVKVCSDVFCSKPQCEH
PVKYPGFCCMFCE

Nucleotide sequence

Length: 2,310

>KH2012:KH.C3.13.v1.R.ND1-1
GATTTGTTAGGAAAACGAATTAAACTGTGTATAACATCTTAACATCATGATTGAATGTTT
GTTATCAAGTAAAACCGCCACATCGGGTGTAAGAACTGTTACTTCTCAATGGTTGTTGTT
GCTTTCGATTGCTTTAGTTGTTCAAAATACATTGGGTGGAATTGTGAGGCGATCCACCGA
TGATGATAGTTATCTACCTGGCTTGATGGATGTGAACCTGGATGTTGGAACCGACATTGA
GGCAAACAGGGAACCTGGAAACCACCATCATCGTCATCATAATCGACACCATGGACCTGG
GAATTTCACGAACGTGCGTGTCGGTCATCAGCATAGTGAAGCGGAGAGAATAGCCGGGGT
GTCATTCGCCGAGATGTGTGAAAGTGGTCAAATGGAGGACCAAGACACCACCACATGGAG
CAATGTACAATGTCAGAACTGTAGTTGTGAAGCAAGCGTGGTGGTGTGTCGGCCAAATGT
GTGTCCAAATCTACCATGCGGACAACCTGTAACGGTGCAAGGCCAATGCTGTCCTGTTTG
TCCAGATAAAGTTTGCCAGGCAGCAGATGGACGTCGTTTCACTGAAGGTGCGGAGTGGTA
TCTTGACGATTGTACTTACTGTGAATGTAAGCAGGGAAGAGCACTATGCTCGGTGGAAGA
CTGCGAGTACAAATCATGTGAAAATCCCGTTAAAGTTCCCGGTGAATGTTGCCCGATATG
CGCGGACGCTTCATGTCACGCGGATTCTGGAAGAAATCTGAGTGCTGGTGCCGTTTGGAA
AGAAGGTCTCTGCACACACTGCTACTGCCGAACCGGCGACCAAGCTTGCGCACAAGAAAA
ATGTCCTCAAATTAACTGCACGCACCCGTACAGACGACCGAATGAATGTTGCTACACATG
TCAAGATGCGGTTGAATGCATTGTGTCAACGTGGGGTACTTGGGGTGAATGTCCCATTCA
GGAATGTGGGGGTGGTAAGAGAAGGAGGTACAGAGGTGTGGTTATACCTCCACGAAACGG
GGGTGCGTTCTGTCCACATATGAGTGAAGCACAAGAATGTCCTCGACAGCCATGCAGTGA
TATTCCGGTTTGTCCCACAACGGAGTGGGGTTCATGGAGCCACTGCACTGCTACTTGTGG
AAAGGGAAGACGACTGCGCATGCGCGAAAGGGCAAAGGTTACCAGGGAGACCATGACGTC
ATTAATAGACTGTTCGCAAACACACATGCAAGAAACAATGCTTTGTTATACTGGGACCTG
CAATCTGTCACCAATACTATTAGATAGTGCACGCCTTGAGCAGGAGGAAAGATGTCCTGG
TGTTTATTGGTCAGAGTGGGGTCCTTGTTCAAAATCCTGTGGTCGTGGAACAAGATTAAG
AAACCAAGTTCTTAGAAACTCCTCCGAATCCATTGAAGGTGCTTGTAGGTTGTTGCGGGA
ATTGAAGGAATGCCACGGCCGTAACTGTACGGGAACTGCTGATTCACCCATCAACTGCAA
AGTAACACACTGGAGCCCTTGGACAGTTTGTTCTGCTACTTGTGGAGAGACAGCAGCGAA
GAGTCGACACCGCACAATCATTAGACATCCATCACCCGGTGGAAGAGCTTGTCCTCATCT
TACTGTGTCTAAGAAGTGTAAACTTGACCCTTGTCTCACCCTTCGATCATTAATACGTAC
ACAACCATCACCGCACGCGTGTGTGTCCGATGACGGGTTAACTCACTACGCGGAAAATGA
ACGGTGGACGCCTGAAGAATGCAAGACATGCGTGTGCATGAACTCTGTCAAAGTTTGCAG
CGATGTGTTTTGTAGCAAGCCTCAATGCGAGCACCCAGTTAAATATCCGGGTTTCTGCTG
CATGTTCTGCGAGTGAATATTAAGTAGATAGCGGCGCTATATACTTGACGATCGGATGGG
CGAACCACTTCCTGCAATGCTTCTGCTTCCGTGTACATCCGTATAGGAGAATATGTTGCA
ACTCCCATGCCTTTGCTTTGCGTATCTAGCGAGTTCATACCAGTTTTACAAAATCCAATG
TAATTTAAATCACCTTTCTTTGCCAAGAGCAGGCTCTAAGCAAAGGTTCCGAAATTTGTA
TTCTTTATTTATAAAGAAGCAAATCGGTTTGGTGAATTTTTTACAATTGCTGTTTGACAA
AACAGTCTTGAGTATTTTGTTGTGCATGCAGCATTCCTTTGACATTTTATTAAGCTTTTG
TTCCAGTATGTTTCTGTTGTTAACCTTATATGTTCGTTGCTAAATTATACAAATGCATTT
TTGACGTTTTAATACAAATCTTACATTTTC

InterProScan

ProSiteProfiles
VWF_dom (IPR001007) - T[113-170] 10.171 - T[172-230] 11.109 - T[232-290] 9.853 - T[554-613] 10.344
SMART
VWF_dom (IPR001007) - T[115-169] 0.046 - T[174-229] 1.5E-7 - T[234-289] 6.5E-4 - T[556-612] 2.1E-5
Pfam
VWF_dom (IPR001007) - T[115-169] 1.2E-6 - T[177-229] 6.7E-9 - T[563-612] 9.4E-7
ProSitePatterns
VWF_dom (IPR001007) - T[193-229] . - T[253-289] . - T[576-612] .
Gene3D
TSP1_rpt_sf (IPR036383) - T[292-342] 1.6E-12 - T[351-409] 1.6E-7 - T[423-478] 9.5E-7 - T[486-535] 4.1E-12
SUPERFAMILY
TSP1_rpt_sf (IPR036383) - T[293-342] 5.1E-8 - T[353-409] 1.83E-7 - T[426-478] 1.03E-6 - T[485-540] 6.28E-9
ProSiteProfiles
TSP1_rpt (IPR000884) - T[294-348] 10.633 - T[352-410] 9.793 - T[426-479] 9.629 - T[487-541] 10.639
SMART
TSP1_rpt (IPR000884) - T[297-348] 2.7E-8 - T[355-410] 4.5E-6 - T[430-479] 4.9E-6 - T[490-541] 1.1E-8
Pfam
TSP1_rpt (IPR000884) - T[298-347] 4.2E-6 - T[357-381] 7.1E-5 - T[432-478] 6.1E-7 - T[492-540] 5.8E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
FRAS1_HUMAN 36.571 % 91.3 6.72E-19
CRIM1_HUMAN 33.511 % 98.6 2.45E-21
SPON1_HUMAN 32.157 % 110 5.12E-25





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