- Transcript 'KH2012:KH.C2.489.v1....' >
- Transcript 'KH2012:KH.C2.489.v1....' >
- Transcript 'KH2012:KH.C3.17.v2.R...'
Transcript Model
Transcript Id
KH2012:KH.C3.17.v2.R.nonSL3-1
Possible name(s)
RORA; RORB; RORC
Gene model
Location
KhC3 [396,585 / 406,615]
Amino acid sequence
Length: 661
>KH.C3.17.v2.R.nonSL3-1
FEELRWRDAYRNIPARAQIEIIPCKVCGDKSSGIHYGVITCEGCHGFFRRSQQNNYAYSC
PRHGNCIIDRSNRNRCQHCRLQKCLRAGMSKDAVKFGRMSKKQRDRLYLEVLKQQQMRAG
QPQVESEAFNQTKPNTVTHSSPTESNVTPYYASAEPRNDVIPTYQDTSPPSMHGGDVMVK
IEPPNETAYSQTHGPLTPPAPQTIPVEPKSTEYSVTKNHYYDVPTSSAEPQSNPVPNFDI
SENLVSNICEAYYKTCQYSREELASYSKAVRSQEGTLQFQNMAPDQLWGLCAEKITEAIQ
HVVEFAKHSNAFMSFDQHDQIILLKTGCLEVVLVRMARAFNITNQTVLFDEKYTPIETFR
SLGCDDLISGMFEMAKSIAELNLTEDQIALFSFAVLITGDRPGLWESNRLNKLQSVVLGS
LQEMFHKTHSDPPDILTKLVMNMLNLRNLSRLHSKYFLYFKHHFVNVSLPPLYKELFFVD
ENQPPQHFAPNPAFNQQRRTSNDPQENEYHKHSFLDGGLATANDLGSDASSGSCAIDAQC
AILPGAGFVPCTSRSSSTSSVSSSGTAPLGNLSCDDISPMLSDNKSLTGDQQSLDHVSVN
HSDDQIQRNQLAEAERLMEAAMNEHVPHNSQTAYPVQMTMLTQQHLHTHDGSLGGIPHLS
I
Nucleotide sequence
Length: 3,499
>KH2012:KH.C3.17.v2.R.nonSL3-1
CATTTGAGGAATTGCGTTGGCGAGATGCGTATCGTAATATCCCAGCCCGTGCTCAAATTG
AGATCATCCCGTGTAAGGTGTGTGGAGACAAATCATCAGGAATCCACTATGGTGTTATAA
CGTGCGAAGGCTGTCACGGCTTCTTTCGTCGTAGCCAACAGAACAACTATGCATACTCAT
GCCCACGTCACGGAAATTGCATCATAGACCGAAGTAATAGAAACAGATGCCAACATTGCC
GGCTGCAGAAATGTCTCAGGGCTGGAATGTCAAAAGACGCTGTCAAGTTTGGCCGTATGT
CTAAGAAGCAAAGAGATCGTCTTTACCTCGAAGTTTTAAAGCAGCAACAAATGAGAGCTG
GCCAACCGCAAGTTGAAAGTGAGGCTTTTAATCAAACGAAGCCCAACACAGTAACACACA
GCTCCCCGACGGAATCAAACGTCACACCATATTATGCATCAGCGGAGCCGCGAAATGACG
TCATTCCGACGTACCAAGACACCTCCCCACCCTCCATGCATGGTGGTGACGTAATGGTTA
AGATCGAACCCCCAAATGAAACAGCTTACAGTCAAACCCACGGCCCTCTAACCCCACCAG
CCCCCCAAACCATCCCGGTAGAACCAAAATCAACCGAGTATTCCGTCACAAAGAACCATT
ATTACGATGTGCCTACGTCATCAGCCGAACCACAATCGAACCCGGTTCCTAACTTCGATA
TCTCTGAGAACCTTGTGAGCAATATATGCGAGGCTTACTACAAAACGTGTCAGTATTCCC
GAGAGGAACTTGCCAGTTATTCTAAAGCTGTTCGCTCCCAGGAAGGGACACTCCAGTTTC
AAAATATGGCACCAGATCAGTTATGGGGTTTATGTGCAGAGAAAATAACAGAAGCAATAC
AACATGTCGTCGAGTTCGCTAAACATTCAAACGCTTTTATGTCGTTTGATCAGCACGATC
AAATCATTCTGCTCAAAACAGGTTGTCTTGAAGTAGTGTTGGTTCGCATGGCCCGTGCTT
TCAACATCACCAACCAGACTGTTCTATTTGATGAGAAATACACGCCAATAGAAACCTTTA
GAAGTCTTGGTTGTGACGACTTGATAAGCGGAATGTTTGAAATGGCGAAATCCATCGCTG
AACTGAACCTTACTGAGGATCAGATCGCTTTGTTCTCGTTTGCAGTTCTTATTACTGGAG
ATCGTCCAGGTTTATGGGAATCGAACCGCCTCAACAAACTCCAGTCTGTTGTTTTGGGGT
CTCTGCAAGAAATGTTTCATAAAACCCATAGCGACCCACCCGATATTTTGACCAAGTTGG
TAATGAATATGCTGAACCTTCGGAACCTGAGTCGTCTACATTCCAAATACTTCCTTTACT
TCAAACATCATTTCGTCAATGTTTCACTCCCTCCACTTTATAAGGAGTTATTTTTCGTCG
ACGAGAACCAACCTCCCCAGCACTTTGCCCCGAACCCCGCTTTTAATCAGCAACGTCGTA
CAAGTAACGATCCACAAGAGAACGAATACCACAAGCATAGTTTTCTCGATGGTGGGCTGG
CGACAGCGAATGATCTTGGATCTGACGCTAGCTCAGGTTCATGTGCAATCGACGCCCAAT
GCGCTATACTACCCGGGGCTGGGTTCGTACCTTGTACCAGTCGTTCATCATCGACGTCTT
CAGTCAGCAGCAGCGGGACAGCGCCGCTTGGAAACCTGAGTTGTGACGACATATCACCCA
TGTTGTCCGACAACAAATCGCTGACCGGGGACCAACAGAGCCTTGACCACGTCTCAGTAA
ATCACTCCGATGACCAGATTCAGCGCAATCAGTTGGCCGAGGCCGAGCGGTTAATGGAAG
CCGCCATGAACGAGCACGTTCCTCACAACTCCCAGACAGCCTACCCTGTACAAATGACAA
TGCTAACACAACAGCATCTTCACACACACGATGGTAGCCTTGGTGGAATTCCTCATTTAT
CCATATAAAACTGAACCTCGTAGATCCATCTTCACAGCGAGCCTTTTTTTCTATTTATTG
AGTATATTAAGAACAAGTATTTAGTTAATTTGCCGACACCGTCTATGCAGTAGCGGTCCG
ATCCAAAGAGATTTTAGCATCAGTGTTGGCGACACAGCCCTGGTTGCGCGTAACACTTCT
TTTTTCCGCCGAACACTGGTTTTCCTAATTTGCTCGACTCGTCGTATTCTGTCGGTGCTA
AACGTTTCTCGTCGCTTTTGTAAGCATGCAGTTTAGCTTTTGCACCCGGGACAACATAAT
AGTGAGCCGTGCATTTATTTCTAATCAACCAGCTCTGTAATTACCCCCAACCCCTCATAA
CCGCCTAGGGTTCACTATAGTCTGTAATGCAATACCTCCGTTTCTAGCATACGTAACCTC
ATTCTGCATCATAGCTATACACCTAACTTAATCCATTCAACGGCAACTATATAACGGACG
TCGCATACGCCTCTTGCTTTTTGTGTGGTAGATTTTGTTAAAACGCTATTCCATGTAATG
AAATTTACATTAATCAAAGTCCCGCTGTCTTTATAAGTGTATTGAGACAAGACTCCATCC
AACTTAGCATATTAAACAACCAGCACTGTTTTGTCGCCACCTTTGTACATAATGTTGCCA
CAATATTCGCCTGGTCAAAAGGTGTATTCATGTTTGGTCGAAGTTCGAATTCTCTCGGCT
CCTCTAACCCTCAAATCCACGCATACAGCGTTATTAAGTCGCCATACCTCACCCCGTTAT
AACACCTCCGACTTTAAACCACGTTGCATATGCGTCAAACCAATCCACCACGTGCAACCA
TCACTTACTTTTTGATGTTTACTTTGCGCCGCATTTTTATTCCTTTTTCAATTGTCGTAA
AAGCCTTCGCAATCTTCGCTAAATTCACCATCACTTGCTTATGACGTCACCGCTTCGGGC
CCATGACGTCATCGGTAATGACGTCATCAACCGTTTGTACAGCGCTATAATGTCGCCATG
TATAGCCCTTCTGCAGCCCACTGTGAAGCCTCTTCGTTAGTTTCTGTACATAATTCAATT
GTTCAATCCCCTACAGCCATAAGAATATAAAATGACGAACAGTATGTTCAGCGTAACCAG
CAATCGAATCCTTTCTTCTTTTTCTCTCATGGTTCATTTGAGAAAGACTATCTCATATTT
CCTATCGCAAACTATCGCTTGTGTACAGCCCCGTATTCGCAAATCATTCGACTTTTCTAA
TGACGCCGTGCACTATGTAGCCAGTATACGTTGCATTATTGAACCATTCGTCTACAACAC
AACTGTCGAGTATTCAGTATCTGCATACACGGTCGCTTTTATCATTCTCATTATCACAGT
GCGCTTCTAAAAGGTGTTGCCCCAGCGTGTAAGGTTTTTGCTTCTTACCTGCTCTTTCTG
CTGTCTTTCTTATTGTGCCGCGTTCTCATAAACGCCTTAAAGGGGAGCGCCAAAATATTA
AACATATTTCACACTTCCA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[16-124] 7.3E-34 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[21-92] 2.2E-36 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[21-96] 19.474 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[23-91] 2.6E-31 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[24-40] 2.2E-17 - T[40-55] 2.2E-17 - T[73-81] 2.2E-17 - T[81-89] 2.2E-17 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[24-50] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[85-95] 4.7E-16 - T[294-315] 4.7E-16 - T[315-331] 4.7E-16 - T[381-396] 4.7E-16 - T[438-455] 4.7E-16 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[236-479] 6.03E-57 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[291-312] 2.4E-9 - T[317-336] 2.4E-9 - T[381-403] 2.4E-9 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[293-450] 6.1E-20 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[296-460] 5.7E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RORG_HUMAN | 41.27 % | 342 | 2.02E-110 |
| RORB_HUMAN | 44.864 % | 370 | 7.3E-122 |
| RORA_HUMAN | 44.937 % | 375 | 6.57E-123 |