Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 813

>KH.C3.17.v2.R.SL5-1
IINAKVTCAIQMKMNNVEYPERHQSTREMLHCRDYGEVGTLSPVIATHNPHAQVQHLVGF
QHTPQPGADHLHNTPYPIAFGNPQRAPSSFVPLGENEPPEHCAPSVNGRSYNSNAISLYG
YNHHPSSPNISSPLETGWPDNTPSPNNGRTPTFEELRWRDAYRNIPARAQIEIIPCKVCG
DKSSGIHYGVITCEGCHGFFRRSQQNNYAYSCPRHGNCIIDRSNRNRCQHCRLQKCLRAG
MSKDAVKFGRMSKKQRDRLYLEVLKQQQMRAGQPQVESEAFNQTKPNTVTHSSPTESNVT
PYYASAEPRNDVIPTYQDTSPPSMHGGDVMVKIEPPNETAYSQTHGPLTPPAPQTIPVEP
KSTEYSVTKNHYYDVPTSSAEPQSNPVPNFDISENLVSNICEAYYKTCQYSREELASYSK
AVRSQEGTLQFQNMAPDQLWGLCAEKITEAIQHVVEFAKHSNAFMSFDQHDQIILLKTGC
LEVVLVRMARAFNITNQTVLFDEKYTPIETFRSLGCDDLISGMFEMAKSIAELNLTEDQI
ALFSFAVLITGDRPGLWESNRLNKLQSVVLGSLQEMFHKTHSDPPDILTKLVMNMLNLRN
LSRLHSKYFLYFKHHFVNVSLPPLYKELFFVDENQPPQHFAPNPAFNQQRRTSNDPQENE
YHKHSFLDGGLATANDLGSDASSGSCAIDAQCAILPGAGFVPCTSRSSSTSSVSSSGTAP
LGNLSCDDISPMLSDNKSLTGDQQSLDHVSVNHSDDQIQRNQLAEAERLMEAAMNEHVPH
NSQTAYPVQMTMLTQQHLHTHDGSLGGIPHLSI

Nucleotide sequence

Length: 4,017

>KH2012:KH.C3.17.v2.R.SL5-1
GTTCCTATCTGATTTAAAAAAGCGAACCTAGTAAAGCATGAGTTCTGGTTCTCAGCGAAG
ATAAATCATAAACGCAAAAGTAACTTGTGCGATCCAAATGAAGATGAATAACGTGGAGTA
TCCAGAGAGGCATCAATCGACCCGAGAAATGCTTCATTGCCGTGATTATGGTGAAGTCGG
AACTTTAAGTCCAGTTATAGCTACCCACAACCCCCACGCACAAGTTCAGCACTTAGTTGG
CTTTCAGCATACTCCCCAACCTGGTGCCGATCACCTGCATAACACGCCTTATCCGATTGC
CTTCGGAAACCCACAAAGGGCGCCAAGTTCCTTTGTACCCTTGGGTGAAAATGAACCCCC
TGAACATTGTGCGCCGTCGGTCAACGGTCGTTCTTACAATTCAAATGCAATTTCTTTGTA
CGGTTACAATCACCATCCGTCTAGCCCTAACATTTCAAGTCCCCTTGAAACTGGCTGGCC
GGACAACACGCCCAGTCCCAACAATGGTCGAACCCCTACATTTGAGGAATTGCGTTGGCG
AGATGCGTATCGTAATATCCCAGCCCGTGCTCAAATTGAGATCATCCCGTGTAAGGTGTG
TGGAGACAAATCATCAGGAATCCACTATGGTGTTATAACGTGCGAAGGCTGTCACGGCTT
CTTTCGTCGTAGCCAACAGAACAACTATGCATACTCATGCCCACGTCACGGAAATTGCAT
CATAGACCGAAGTAATAGAAACAGATGCCAACATTGCCGGCTGCAGAAATGTCTCAGGGC
TGGAATGTCAAAAGACGCTGTCAAGTTTGGCCGTATGTCTAAGAAGCAAAGAGATCGTCT
TTACCTCGAAGTTTTAAAGCAGCAACAAATGAGAGCTGGCCAACCGCAAGTTGAAAGTGA
GGCTTTTAATCAAACGAAGCCCAACACAGTAACACACAGCTCCCCGACGGAATCAAACGT
CACACCATATTATGCATCAGCGGAGCCGCGAAATGACGTCATTCCGACGTACCAAGACAC
CTCCCCACCCTCCATGCATGGTGGTGACGTAATGGTTAAGATCGAACCCCCAAATGAAAC
AGCTTACAGTCAAACCCACGGCCCTCTAACCCCACCAGCCCCCCAAACCATCCCGGTAGA
ACCAAAATCAACCGAGTATTCCGTCACAAAGAACCATTATTACGATGTGCCTACGTCATC
AGCCGAACCACAATCGAACCCGGTTCCTAACTTCGATATCTCTGAGAACCTTGTGAGCAA
TATATGCGAGGCTTACTACAAAACGTGTCAGTATTCCCGAGAGGAACTTGCCAGTTATTC
TAAAGCTGTTCGCTCCCAGGAAGGGACACTCCAGTTTCAAAATATGGCACCAGATCAGTT
ATGGGGTTTATGTGCAGAGAAAATAACAGAAGCAATACAACATGTCGTCGAGTTCGCTAA
ACATTCAAACGCTTTTATGTCGTTTGATCAGCACGATCAAATCATTCTGCTCAAAACAGG
TTGTCTTGAAGTAGTGTTGGTTCGCATGGCCCGTGCTTTCAACATCACCAACCAGACTGT
TCTATTTGATGAGAAATACACGCCAATAGAAACCTTTAGAAGTCTTGGTTGTGACGACTT
GATAAGCGGAATGTTTGAAATGGCGAAATCCATCGCTGAACTGAACCTTACTGAGGATCA
GATCGCTTTGTTCTCGTTTGCAGTTCTTATTACTGGAGATCGTCCAGGTTTATGGGAATC
GAACCGCCTCAACAAACTCCAGTCTGTTGTTTTGGGGTCTCTGCAAGAAATGTTTCATAA
AACCCATAGCGACCCACCCGATATTTTGACCAAGTTGGTAATGAATATGCTGAACCTTCG
GAACCTGAGTCGTCTACATTCCAAATACTTCCTTTACTTCAAACATCATTTCGTCAATGT
TTCACTCCCTCCACTTTATAAGGAGTTATTTTTCGTCGACGAGAACCAACCTCCCCAGCA
CTTTGCCCCGAACCCCGCTTTTAATCAGCAACGTCGTACAAGTAACGATCCACAAGAGAA
CGAATACCACAAGCATAGTTTTCTCGATGGTGGGCTGGCGACAGCGAATGATCTTGGATC
TGACGCTAGCTCAGGTTCATGTGCAATCGACGCCCAATGCGCTATACTACCCGGGGCTGG
GTTCGTACCTTGTACCAGTCGTTCATCATCGACGTCTTCAGTCAGCAGCAGCGGGACAGC
GCCGCTTGGAAACCTGAGTTGTGACGACATATCACCCATGTTGTCCGACAACAAATCGCT
GACCGGGGACCAACAGAGCCTTGACCACGTCTCAGTAAATCACTCCGATGACCAGATTCA
GCGCAATCAGTTGGCCGAGGCCGAGCGGTTAATGGAAGCCGCCATGAACGAGCACGTTCC
TCACAACTCCCAGACAGCCTACCCTGTACAAATGACAATGCTAACACAACAGCATCTTCA
CACACACGATGGTAGCCTTGGTGGAATTCCTCATTTATCCATATAAAACTGAACCTCGTA
GATCCATCTTCACAGCGAGCCTTTTTTTCTATTTATTGAGTATATTAAGAACAAGTATTT
AGTTAATTTGCCGACACCGTCTATGCAGTAGCGGTCCGATCCAAAGAGATTTTAGCATCA
GTGTTGGCGACACAGCCCTGGTTGCGCGTAACACTTCTTTTTTCCGCCGAACACTGGTTT
TCCTAATTTGCTCGACTCGTCGTATTCTGTCGGTGCTAAACGTTTCTCGTCGCTTTTGTA
AGCATGCAGTTTAGCTTTTGCACCCGGGACAACATAATAGTGAGCCGTGCATTTATTTCT
AATCAACCAGCTCTGTAATTACCCCCAACCCCTCATAACCGCCTAGGGTTCACTATAGTC
TGTAATGCAATACCTCCGTTTCTAGCATACGTAACCTCATTCTGCATCATAGCTATACAC
CTAACTTAATCCATTCAACGGCAACTATATAACGGACGTCGCATACGCCTCTTGCTTTTT
GTGTGGTAGATTTTGTTAAAACGCTATTCCATGTAATGAAATTTACATTAATCAAAGTCC
CGCTGTCTTTATAAGTGTATTGAGACAAGACTCCATCCAACTTAGCATATTAAACAACCA
GCACTGTTTTGTCGCCACCTTTGTACATAATGTTGCCACAATATTCGCCTGGTCAAAAGG
TGTATTCATGTTTGGTCGAAGTTCGAATTCTCTCGGCTCCTCTAACCCTCAAATCCACGC
ATACAGCGTTATTAAGTCGCCATACCTCACCCCGTTATAACACCTCCGACTTTAAACCAC
GTTGCATATGCGTCAAACCAATCCACCACGTGCAACCATCACTTACTTTTTGATGTTTAC
TTTGCGCCGCATTTTTATTCCTTTTTCAATTGTCGTAAAAGCCTTCGCAATCTTCGCTAA
ATTCACCATCACTTGCTTATGACGTCACCGCTTCGGGCCCATGACGTCATCGGTAATGAC
GTCATCAACCGTTTGTACAGCGCTATAATGTCGCCATGTATAGCCCTTCTGCAGCCCACT
GTGAAGCCTCTTCGTTAGTTTCTGTACATAATTCAATTGTTCAATCCCCTACAGCCATAA
GAATATAAAATGACGAACAGTATGTTCAGCGTAACCAGCAATCGAATCCTTTCTTCTTTT
TCTCTCATGGTTCATTTGAGAAAGACTATCTCATATTTCCTATCGCAAACTATCGCTTGT
GTACAGCCCCGTATTCGCAAATCATTCGACTTTTCTAATGACGCCGTGCACTATGTAGCC
AGTATACGTTGCATTATTGAACCATTCGTCTACAACACAACTGTCGAGTATTCAGTATCT
GCATACACGGTCGCTTTTATCATTCTCATTATCACAGTGCGCTTCTAAAAGGTGTTGCCC
CAGCGTGTAAGGTTTTTGCTTCTTACCTGCTCTTTCTGCTGTCTTTCTTATTGTGCCGCG
TTCTCATAAACGCCTTAAAGGGGAGCGCCAAAATATTAAACATATTTCACACTTCCA

InterProScan

Gene3D	Znf_NHR/GATA (IPR013088) - T[168-276] 9.9E-34
ProSiteProfiles	Znf_hrmn_rcpt (IPR001628) - T[173-248] 19.474
SMART	Znf_hrmn_rcpt (IPR001628) - T[173-244] 2.2E-36
Pfam	Znf_hrmn_rcpt (IPR001628) - T[175-243] 3.5E-31
ProSitePatterns	Znf_hrmn_rcpt (IPR001628) - T[176-202] .
PRINTS	Znf_hrmn_rcpt (IPR001628) - T[176-192] 4.7E-17 - T[192-207] 4.7E-17 - T[225-233] 4.7E-17 - T[233-241] 4.7E-17
PRINTS	Nuclear_hrmn_rcpt (IPR001723) - T[237-247] 1.2E-15 - T[446-467] 1.2E-15 - T[467-483] 1.2E-15 - T[533-548] 1.2E-15 - T[590-607] 1.2E-15
SUPERFAMILY	NHR_like_dom_sf (IPR035500) - T[388-631] 9.18E-57
PRINTS	ThyrH_rcpt (IPR001728) - T[443-464] 4.2E-9 - T[469-488] 4.2E-9 - T[533-555] 4.2E-9
SMART	Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[445-602] 6.1E-20
Pfam	Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[448-612] 8.2E-18