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- Transcript 'Moocci.CG.ELv1_2.S64...' >
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- Clone 'cilv006n17' >
- Transcript 'KH2012:KH.C3.17.v3.R...'
Transcript Model
Transcript Id
KH2012:KH.C3.17.v3.R.SL1-1
Possible name(s)
RORA; RORB; RORC
Gene model
Location
KhC3 [396,585 / 410,210]
Amino acid sequence
Length: 652
>KH.C3.17.v3.R.SL1-1
NMKTKGKAQIEIIPCKVCGDKSSGIHYGVITCEGCHGFFRRSQQNNYAYSCPRHGNCIID
RSNRNRCQHCRLQKCLRAGMSKDAVKFGRMSKKQRDRLYLEVLKQQQMRAGQPQVESEAF
NQTKPNTVTHSSPTESNVTPYYASAEPRNDVIPTYQDTSPPSMHGGDVMVKIEPPNETAY
SQTHGPLTPPAPQTIPVEPKSTEYSVTKNHYYDVPTSSAEPQSNPVPNFDISENLVSNIC
EAYYKTCQYSREELASYSKAVRSQEGTLQFQNMAPDQLWGLCAEKITEAIQHVVEFAKHS
NAFMSFDQHDQIILLKTGCLEVVLVRMARAFNITNQTVLFDEKYTPIETFRSLGCDDLIS
GMFEMAKSIAELNLTEDQIALFSFAVLITGDRPGLWESNRLNKLQSVVLGSLQEMFHKTH
SDPPDILTKLVMNMLNLRNLSRLHSKYFLYFKHHFVNVSLPPLYKELFFVDENQPPQHFA
PNPAFNQQRRTSNDPQENEYHKHSFLDGGLATANDLGSDASSGSCAIDAQCAILPGAGFV
PCTSRSSSTSSVSSSGTAPLGNLSCDDISPMLSDNKSLTGDQQSLDHVSVNHSDDQIQRN
QLAEAERLMEAAMNEHVPHNSQTAYPVQMTMLTQQHLHTHDGSLGGIPHLSI
Nucleotide sequence
Length: 3,671
>KH2012:KH.C3.17.v3.R.SL1-1
GTCAATTAGGCTGCAATTATATGACAGTAGGTAAACAACTTTGCTGTCATATAATACCAC
CTGCCTATTGGCTGCAAGAAAACAGAAGGACTTGCTTTGGGTGCATGTCTAATGAAAGAA
ATTGATTTGTTGTGATATTGAACATAAAACTTTACATGGTTCAACAAAATAGCAACAACT
TCTCATTTCCACCTGTATTAAAACATGAAGACGAAGGGAAAAGCTCAAATTGAGATCATC
CCGTGTAAGGTGTGTGGAGACAAATCATCAGGAATCCACTATGGTGTTATAACGTGCGAA
GGCTGTCACGGCTTCTTTCGTCGTAGCCAACAGAACAACTATGCATACTCATGCCCACGT
CACGGAAATTGCATCATAGACCGAAGTAATAGAAACAGATGCCAACATTGCCGGCTGCAG
AAATGTCTCAGGGCTGGAATGTCAAAAGACGCTGTCAAGTTTGGCCGTATGTCTAAGAAG
CAAAGAGATCGTCTTTACCTCGAAGTTTTAAAGCAGCAACAAATGAGAGCTGGCCAACCG
CAAGTTGAAAGTGAGGCTTTTAATCAAACGAAGCCCAACACAGTAACACACAGCTCCCCG
ACGGAATCAAACGTCACACCATATTATGCATCAGCGGAGCCGCGAAATGACGTCATTCCG
ACGTACCAAGACACCTCCCCACCCTCCATGCATGGTGGTGACGTAATGGTTAAGATCGAA
CCCCCAAATGAAACAGCTTACAGTCAAACCCACGGCCCTCTAACCCCACCAGCCCCCCAA
ACCATCCCGGTAGAACCAAAATCAACCGAGTATTCCGTCACAAAGAACCATTATTACGAT
GTGCCTACGTCATCAGCCGAACCACAATCGAACCCGGTTCCTAACTTCGATATCTCTGAG
AACCTTGTGAGCAATATATGCGAGGCTTACTACAAAACGTGTCAGTATTCCCGAGAGGAA
CTTGCCAGTTATTCTAAAGCTGTTCGCTCCCAGGAAGGGACACTCCAGTTTCAAAATATG
GCACCAGATCAGTTATGGGGTTTATGTGCAGAGAAAATAACAGAAGCAATACAACATGTC
GTCGAGTTCGCTAAACATTCAAACGCTTTTATGTCGTTTGATCAGCACGATCAAATCATT
CTGCTCAAAACAGGTTGTCTTGAAGTAGTGTTGGTTCGCATGGCCCGTGCTTTCAACATC
ACCAACCAGACTGTTCTATTTGATGAGAAATACACGCCAATAGAAACCTTTAGAAGTCTT
GGTTGTGACGACTTGATAAGCGGAATGTTTGAAATGGCGAAATCCATCGCTGAACTGAAC
CTTACTGAGGATCAGATCGCTTTGTTCTCGTTTGCAGTTCTTATTACTGGAGATCGTCCA
GGTTTATGGGAATCGAACCGCCTCAACAAACTCCAGTCTGTTGTTTTGGGGTCTCTGCAA
GAAATGTTTCATAAAACCCATAGCGACCCACCCGATATTTTGACCAAGTTGGTAATGAAT
ATGCTGAACCTTCGGAACCTGAGTCGTCTACATTCCAAATACTTCCTTTACTTCAAACAT
CATTTCGTCAATGTTTCACTCCCTCCACTTTATAAGGAGTTATTTTTCGTCGACGAGAAC
CAACCTCCCCAGCACTTTGCCCCGAACCCCGCTTTTAATCAGCAACGTCGTACAAGTAAC
GATCCACAAGAGAACGAATACCACAAGCATAGTTTTCTCGATGGTGGGCTGGCGACAGCG
AATGATCTTGGATCTGACGCTAGCTCAGGTTCATGTGCAATCGACGCCCAATGCGCTATA
CTACCCGGGGCTGGGTTCGTACCTTGTACCAGTCGTTCATCATCGACGTCTTCAGTCAGC
AGCAGCGGGACAGCGCCGCTTGGAAACCTGAGTTGTGACGACATATCACCCATGTTGTCC
GACAACAAATCGCTGACCGGGGACCAACAGAGCCTTGACCACGTCTCAGTAAATCACTCC
GATGACCAGATTCAGCGCAATCAGTTGGCCGAGGCCGAGCGGTTAATGGAAGCCGCCATG
AACGAGCACGTTCCTCACAACTCCCAGACAGCCTACCCTGTACAAATGACAATGCTAACA
CAACAGCATCTTCACACACACGATGGTAGCCTTGGTGGAATTCCTCATTTATCCATATAA
AACTGAACCTCGTAGATCCATCTTCACAGCGAGCCTTTTTTTCTATTTATTGAGTATATT
AAGAACAAGTATTTAGTTAATTTGCCGACACCGTCTATGCAGTAGCGGTCCGATCCAAAG
AGATTTTAGCATCAGTGTTGGCGACACAGCCCTGGTTGCGCGTAACACTTCTTTTTTCCG
CCGAACACTGGTTTTCCTAATTTGCTCGACTCGTCGTATTCTGTCGGTGCTAAACGTTTC
TCGTCGCTTTTGTAAGCATGCAGTTTAGCTTTTGCACCCGGGACAACATAATAGTGAGCC
GTGCATTTATTTCTAATCAACCAGCTCTGTAATTACCCCCAACCCCTCATAACCGCCTAG
GGTTCACTATAGTCTGTAATGCAATACCTCCGTTTCTAGCATACGTAACCTCATTCTGCA
TCATAGCTATACACCTAACTTAATCCATTCAACGGCAACTATATAACGGACGTCGCATAC
GCCTCTTGCTTTTTGTGTGGTAGATTTTGTTAAAACGCTATTCCATGTAATGAAATTTAC
ATTAATCAAAGTCCCGCTGTCTTTATAAGTGTATTGAGACAAGACTCCATCCAACTTAGC
ATATTAAACAACCAGCACTGTTTTGTCGCCACCTTTGTACATAATGTTGCCACAATATTC
GCCTGGTCAAAAGGTGTATTCATGTTTGGTCGAAGTTCGAATTCTCTCGGCTCCTCTAAC
CCTCAAATCCACGCATACAGCGTTATTAAGTCGCCATACCTCACCCCGTTATAACACCTC
CGACTTTAAACCACGTTGCATATGCGTCAAACCAATCCACCACGTGCAACCATCACTTAC
TTTTTGATGTTTACTTTGCGCCGCATTTTTATTCCTTTTTCAATTGTCGTAAAAGCCTTC
GCAATCTTCGCTAAATTCACCATCACTTGCTTATGACGTCACCGCTTCGGGCCCATGACG
TCATCGGTAATGACGTCATCAACCGTTTGTACAGCGCTATAATGTCGCCATGTATAGCCC
TTCTGCAGCCCACTGTGAAGCCTCTTCGTTAGTTTCTGTACATAATTCAATTGTTCAATC
CCCTACAGCCATAAGAATATAAAATGACGAACAGTATGTTCAGCGTAACCAGCAATCGAA
TCCTTTCTTCTTTTTCTCTCATGGTTCATTTGAGAAAGACTATCTCATATTTCCTATCGC
AAACTATCGCTTGTGTACAGCCCCGTATTCGCAAATCATTCGACTTTTCTAATGACGCCG
TGCACTATGTAGCCAGTATACGTTGCATTATTGAACCATTCGTCTACAACACAACTGTCG
AGTATTCAGTATCTGCATACACGGTCGCTTTTATCATTCTCATTATCACAGTGCGCTTCT
AAAAGGTGTTGCCCCAGCGTGTAAGGTTTTTGCTTCTTACCTGCTCTTTCTGCTGTCTTT
CTTATTGTGCCGCGTTCTCATAAACGCCTTAAAGGGGAGCGCCAAAATATTAAACATATT
TCACACTTCCA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[5-115] 6.4E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[12-87] 19.474 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[12-83] 2.2E-36 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[14-82] 2.6E-31 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[15-41] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[15-31] 2.1E-17 - T[31-46] 2.1E-17 - T[64-72] 2.1E-17 - T[72-80] 2.1E-17 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[76-86] 4.5E-16 - T[285-306] 4.5E-16 - T[306-322] 4.5E-16 - T[372-387] 4.5E-16 - T[429-446] 4.5E-16 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[227-470] 5.9E-57 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[282-303] 2.3E-9 - T[308-327] 2.3E-9 - T[372-394] 2.3E-9 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[284-441] 6.1E-20 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[287-451] 5.6E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RORG_HUMAN | 41.27 % | 343 | 7.75E-111 |
| RORB_HUMAN | 44.583 % | 370 | 3.49E-122 |
| RORA_HUMAN | 44.937 % | 375 | 4.38E-123 |