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- Transcript 'KH2012:KH.C3.17.v4.A...'
Transcript Model
Transcript Id
KH2012:KH.C3.17.v4.A.nonSL6-1
Possible name(s)
RORA; RORB; RORC
Gene model
Location
KhC3 [396,585 / 406,597]
Amino acid sequence
Length: 655
>KH.C3.17.v4.A.nonSL6-1
RDAYRNIPARAQIEIIPCKVCGDKSSGIHYGVITCEGCKGFFRRSQQNNYAYSCPRHGNC
IIDRSNRNRCQHCRLQKCLRAGMSKDAVKFGRMSKKQRDRLYLEVLKQQQMRAGQPQVES
EAFNQTKPNTVTHSSPTESNVTPYYASAEPRNDVIPTYQDTSPPSMHGGDVMVKIEPPNE
TAYSQTHGPLTPPAPQTIPVEPKSTEYSVTKNHYYDVPTSSAEPQSNPVPNFDISENLVS
NICEAYYKTCQYSREELASYSKAVRSQEGTLQFQNMAPDQLWGLCAEKITEAIQHVVEFA
KHSNAFMSFDQHDQIILLKTGCLEVVLVRMARAFNITNQTVLFDEKYTPIETFRSLGCDD
LISGMFEMAKSIAELNLTEDQIALFSFAVLITGDRPGLWESNRLNKLQSVVLGSLQEMFH
KTHSDPPDILTKLVMNMLNLRNLSRLHSKYFLYFKHHFVNVSLPPLYKELFFVDENQPPQ
HFAPNPAFNQQRRTSNDPQENEYHKHSFLDGGLATANDLGSDASSGSCAIDAQCAILPGA
GFVPCTSRSSSTSSVSSSGTAPLGNLSCDDISPMLSDNKSLTGDQQSLDHVSVNHSDDQI
QRNQLAEAERLMEAAMNEHVPHNSQTAYPVQMTMLTQQHLHTHDGSLGGIPHLSI
Nucleotide sequence
Length: 3,481
>KH2012:KH.C3.17.v4.A.nonSL6-1
GGCGAGATGCGTATCGTAATATCCCAGCCCGTGCTCAAATTGAGATCATCCCGTGTAAGG
TGTGTGGAGACAAATCATCAGGAATCCACTATGGTGTTATAACGTGCGAAGGGTGCAAGG
GCTTCTTTCGTCGTAGCCAACAGAACAACTATGCATACTCATGCCCACGTCACGGAAATT
GCATCATAGACCGAAGTAATAGAAACAGATGCCAACATTGCCGGCTGCAGAAATGTCTCA
GGGCTGGAATGTCAAAAGACGCTGTCAAGTTTGGCCGTATGTCTAAGAAGCAAAGAGATC
GTCTTTACCTCGAAGTTTTAAAGCAGCAACAAATGAGAGCTGGCCAACCGCAAGTTGAAA
GTGAGGCTTTTAATCAAACGAAGCCCAACACAGTAACACACAGCTCCCCGACGGAATCAA
ACGTCACACCATATTATGCATCAGCGGAGCCGCGAAATGACGTCATTCCGACGTACCAAG
ACACCTCCCCACCCTCCATGCATGGTGGTGACGTAATGGTTAAGATCGAACCCCCAAATG
AAACAGCTTACAGTCAAACCCACGGCCCTCTAACCCCACCAGCCCCCCAAACCATCCCGG
TAGAACCAAAATCAACCGAGTATTCCGTCACAAAGAACCATTATTACGATGTGCCTACGT
CATCAGCCGAACCACAATCGAACCCGGTTCCTAACTTCGATATCTCTGAGAACCTTGTGA
GCAATATATGCGAGGCTTACTACAAAACGTGTCAGTATTCCCGAGAGGAACTTGCCAGTT
ATTCTAAAGCTGTTCGCTCCCAGGAAGGGACACTCCAGTTTCAAAATATGGCACCAGATC
AGTTATGGGGTTTATGTGCAGAGAAAATAACAGAAGCAATACAACATGTCGTCGAGTTCG
CTAAACATTCAAACGCTTTTATGTCGTTTGATCAGCACGATCAAATCATTCTGCTCAAAA
CAGGTTGTCTTGAAGTAGTGTTGGTTCGCATGGCCCGTGCTTTCAACATCACCAACCAGA
CTGTTCTATTTGATGAGAAATACACGCCAATAGAAACCTTTAGAAGTCTTGGTTGTGACG
ACTTGATAAGCGGAATGTTTGAAATGGCGAAATCCATCGCTGAACTGAACCTTACTGAGG
ATCAGATCGCTTTGTTCTCGTTTGCAGTTCTTATTACTGGAGATCGTCCAGGTTTATGGG
AATCGAACCGCCTCAACAAACTCCAGTCTGTTGTTTTGGGGTCTCTGCAAGAAATGTTTC
ATAAAACCCATAGCGACCCACCCGATATTTTGACCAAGTTGGTAATGAATATGCTGAACC
TTCGGAACCTGAGTCGTCTACATTCCAAATACTTCCTTTACTTCAAACATCATTTCGTCA
ATGTTTCACTCCCTCCACTTTATAAGGAGTTATTTTTCGTCGACGAGAACCAACCTCCCC
AGCACTTTGCCCCGAACCCCGCTTTTAATCAGCAACGTCGTACAAGTAACGATCCACAAG
AGAACGAATACCACAAGCATAGTTTTCTCGATGGTGGGCTGGCGACAGCGAATGATCTTG
GATCTGACGCTAGCTCAGGTTCATGTGCAATCGACGCCCAATGCGCTATACTACCCGGGG
CTGGGTTCGTACCTTGTACCAGTCGTTCATCATCGACGTCTTCAGTCAGCAGCAGCGGGA
CAGCGCCGCTTGGAAACCTGAGTTGTGACGACATATCACCCATGTTGTCCGACAACAAAT
CGCTGACCGGGGACCAACAGAGCCTTGACCACGTCTCAGTAAATCACTCCGATGACCAGA
TTCAGCGCAATCAGTTGGCCGAGGCCGAGCGGTTAATGGAAGCCGCCATGAACGAGCACG
TTCCTCACAACTCCCAGACAGCCTACCCTGTACAAATGACAATGCTAACACAACAGCATC
TTCACACACACGATGGTAGCCTTGGTGGAATTCCTCATTTATCCATATAAAACTGAACCT
CGTAGATCCATCTTCACAGCGAGCCTTTTTTTCTATTTATTGAGTATATTAAGAACAAGT
ATTTAGTTAATTTGCCGACACCGTCTATGCAGTAGCGGTCCGATCCAAAGAGATTTTAGC
ATCAGTGTTGGCGACACAGCCCTGGTTGCGCGTAACACTTCTTTTTTCCGCCGAACACTG
GTTTTCCTAATTTGCTCGACTCGTCGTATTCTGTCGGTGCTAAACGTTTCTCGTCGCTTT
TGTAAGCATGCAGTTTAGCTTTTGCACCCGGGACAACATAATAGTGAGCCGTGCATTTAT
TTCTAATCAACCAGCTCTGTAATTACCCCCAACCCCTCATAACCGCCTAGGGTTCACTAT
AGTCTGTAATGCAATACCTCCGTTTCTAGCATACGTAACCTCATTCTGCATCATAGCTAT
ACACCTAACTTAATCCATTCAACGGCAACTATATAACGGACGTCGCATACGCCTCTTGCT
TTTTGTGTGGTAGATTTTGTTAAAACGCTATTCCATGTAATGAAATTTACATTAATCAAA
GTCCCGCTGTCTTTATAAGTGTATTGAGACAAGACTCCATCCAACTTAGCATATTAAACA
ACCAGCACTGTTTTGTCGCCACCTTTGTACATAATGTTGCCACAATATTCGCCTGGTCAA
AAGGTGTATTCATGTTTGGTCGAAGTTCGAATTCTCTCGGCTCCTCTAACCCTCAAATCC
ACGCATACAGCGTTATTAAGTCGCCATACCTCACCCCGTTATAACACCTCCGACTTTAAA
CCACGTTGCATATGCGTCAAACCAATCCACCACGTGCAACCATCACTTACTTTTTGATGT
TTACTTTGCGCCGCATTTTTATTCCTTTTTCAATTGTCGTAAAAGCCTTCGCAATCTTCG
CTAAATTCACCATCACTTGCTTATGACGTCACCGCTTCGGGCCCATGACGTCATCGGTAA
TGACGTCATCAACCGTTTGTACAGCGCTATAATGTCGCCATGTATAGCCCTTCTGCAGCC
CACTGTGAAGCCTCTTCGTTAGTTTCTGTACATAATTCAATTGTTCAATCCCCTACAGCC
ATAAGAATATAAAATGACGAACAGTATGTTCAGCGTAACCAGCAATCGAATCCTTTCTTC
TTTTTCTCTCATGGTTCATTTGAGAAAGACTATCTCATATTTCCTATCGCAAACTATCGC
TTGTGTACAGCCCCGTATTCGCAAATCATTCGACTTTTCTAATGACGCCGTGCACTATGT
AGCCAGTATACGTTGCATTATTGAACCATTCGTCTACAACACAACTGTCGAGTATTCAGT
ATCTGCATACACGGTCGCTTTTATCATTCTCATTATCACAGTGCGCTTCTAAAAGGTGTT
GCCCCAGCGTGTAAGGTTTTTGCTTCTTACCTGCTCTTTCTGCTGTCTTTCTTATTGTGC
CGCGTTCTCATAAACGCCTTAAAGGGGAGCGCCAAAATATTAAACATATTTCACACTTCC
A
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[10-118] 1.6E-34 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[15-86] 9.0E-39 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[15-90] 19.901 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[17-85] 4.6E-32 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[18-44] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[18-34] 3.1E-18 - T[34-49] 3.1E-18 - T[67-75] 3.1E-18 - T[75-83] 3.1E-18 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[79-89] 4.6E-16 - T[288-309] 4.6E-16 - T[309-325] 4.6E-16 - T[375-390] 4.6E-16 - T[432-449] 4.6E-16 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[230-473] 5.9E-57 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[285-306] 2.3E-9 - T[311-330] 2.3E-9 - T[375-397] 2.3E-9 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[287-444] 6.1E-20 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[290-454] 5.7E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RORG_HUMAN | 41.468 % | 345 | 1.28E-111 |
| RORB_HUMAN | 45.073 % | 373 | 5.87E-123 |
| RORA_HUMAN | 45.148 % | 377 | 4.36E-124 |