- Transcript 'KH2012:KH.S696.1.v1....' >
- Transcript 'KH2012:KH.C6.184.v1....' >
- Transcript 'KH2012:KH.C11.485.v1...' >
- Transcript 'KH2012:KH.C9.176.v4....' >
- Transcript 'KH2012:KH.C3.17.v4.A...'
Transcript Model
Transcript Id
KH2012:KH.C3.17.v4.A.SL2-1
Possible name(s)
RORA; RORB; RORC
Gene model
Location
KhC3 [396,585 / 407,185]
Amino acid sequence
Length: 813
>KH.C3.17.v4.A.SL2-1
IINAKVTCAIQMKMNNVEYPERHQSTREMLHCRDYGEVGTLSPVIATHNPHAQVQHLVGF
QHTPQPGADHLHNTPYPIAFGNPQRAPSSFVPLGENEPPEHCAPSVNGRSYNSNAISLYG
YNHHPSSPNISSPLETGWPDNTPSPNNGRTPTFEELRWRDAYRNIPARAQIEIIPCKVCG
DKSSGIHYGVITCEGCKGFFRRSQQNNYAYSCPRHGNCIIDRSNRNRCQHCRLQKCLRAG
MSKDAVKFGRMSKKQRDRLYLEVLKQQQMRAGQPQVESEAFNQTKPNTVTHSSPTESNVT
PYYASAEPRNDVIPTYQDTSPPSMHGGDVMVKIEPPNETAYSQTHGPLTPPAPQTIPVEP
KSTEYSVTKNHYYDVPTSSAEPQSNPVPNFDISENLVSNICEAYYKTCQYSREELASYSK
AVRSQEGTLQFQNMAPDQLWGLCAEKITEAIQHVVEFAKHSNAFMSFDQHDQIILLKTGC
LEVVLVRMARAFNITNQTVLFDEKYTPIETFRSLGCDDLISGMFEMAKSIAELNLTEDQI
ALFSFAVLITGDRPGLWESNRLNKLQSVVLGSLQEMFHKTHSDPPDILTKLVMNMLNLRN
LSRLHSKYFLYFKHHFVNVSLPPLYKELFFVDENQPPQHFAPNPAFNQQRRTSNDPQENE
YHKHSFLDGGLATANDLGSDASSGSCAIDAQCAILPGAGFVPCTSRSSSTSSVSSSGTAP
LGNLSCDDISPMLSDNKSLTGDQQSLDHVSVNHSDDQIQRNQLAEAERLMEAAMNEHVPH
NSQTAYPVQMTMLTQQHLHTHDGSLGGIPHLSI
Nucleotide sequence
Length: 4,069
>KH2012:KH.C3.17.v4.A.SL2-1
TAATATGTTATAGCATAAGCACTCCGATCATACTCCTGATTTTCTCGCGTAGGTTCCTAT
CTGATTTAAAAAAGCGAACCTAGTAAAGCATGAGTTCTGGTTCTCAGCGAAGATAAATCA
TAAACGCAAAAGTAACTTGTGCGATCCAAATGAAGATGAATAACGTGGAGTATCCAGAGA
GGCATCAATCGACCCGAGAAATGCTTCATTGCCGTGATTATGGTGAAGTCGGAACTTTAA
GTCCAGTTATAGCTACCCACAACCCCCACGCACAAGTTCAGCACTTAGTTGGCTTTCAGC
ATACTCCCCAACCTGGTGCCGATCACCTGCATAACACGCCTTATCCGATTGCCTTCGGAA
ACCCACAAAGGGCGCCAAGTTCCTTTGTACCCTTGGGTGAAAATGAACCCCCTGAACATT
GTGCGCCGTCGGTCAACGGTCGTTCTTACAATTCAAATGCAATTTCTTTGTACGGTTACA
ATCACCATCCGTCTAGCCCTAACATTTCAAGTCCCCTTGAAACTGGCTGGCCGGACAACA
CGCCCAGTCCCAACAATGGTCGAACCCCTACATTTGAGGAATTGCGTTGGCGAGATGCGT
ATCGTAATATCCCAGCCCGTGCTCAAATTGAGATCATCCCGTGTAAGGTGTGTGGAGACA
AATCATCAGGAATCCACTATGGTGTTATAACGTGCGAAGGGTGCAAGGGCTTCTTTCGTC
GTAGCCAACAGAACAACTATGCATACTCATGCCCACGTCACGGAAATTGCATCATAGACC
GAAGTAATAGAAACAGATGCCAACATTGCCGGCTGCAGAAATGTCTCAGGGCTGGAATGT
CAAAAGACGCTGTCAAGTTTGGCCGTATGTCTAAGAAGCAAAGAGATCGTCTTTACCTCG
AAGTTTTAAAGCAGCAACAAATGAGAGCTGGCCAACCGCAAGTTGAAAGTGAGGCTTTTA
ATCAAACGAAGCCCAACACAGTAACACACAGCTCCCCGACGGAATCAAACGTCACACCAT
ATTATGCATCAGCGGAGCCGCGAAATGACGTCATTCCGACGTACCAAGACACCTCCCCAC
CCTCCATGCATGGTGGTGACGTAATGGTTAAGATCGAACCCCCAAATGAAACAGCTTACA
GTCAAACCCACGGCCCTCTAACCCCACCAGCCCCCCAAACCATCCCGGTAGAACCAAAAT
CAACCGAGTATTCCGTCACAAAGAACCATTATTACGATGTGCCTACGTCATCAGCCGAAC
CACAATCGAACCCGGTTCCTAACTTCGATATCTCTGAGAACCTTGTGAGCAATATATGCG
AGGCTTACTACAAAACGTGTCAGTATTCCCGAGAGGAACTTGCCAGTTATTCTAAAGCTG
TTCGCTCCCAGGAAGGGACACTCCAGTTTCAAAATATGGCACCAGATCAGTTATGGGGTT
TATGTGCAGAGAAAATAACAGAAGCAATACAACATGTCGTCGAGTTCGCTAAACATTCAA
ACGCTTTTATGTCGTTTGATCAGCACGATCAAATCATTCTGCTCAAAACAGGTTGTCTTG
AAGTAGTGTTGGTTCGCATGGCCCGTGCTTTCAACATCACCAACCAGACTGTTCTATTTG
ATGAGAAATACACGCCAATAGAAACCTTTAGAAGTCTTGGTTGTGACGACTTGATAAGCG
GAATGTTTGAAATGGCGAAATCCATCGCTGAACTGAACCTTACTGAGGATCAGATCGCTT
TGTTCTCGTTTGCAGTTCTTATTACTGGAGATCGTCCAGGTTTATGGGAATCGAACCGCC
TCAACAAACTCCAGTCTGTTGTTTTGGGGTCTCTGCAAGAAATGTTTCATAAAACCCATA
GCGACCCACCCGATATTTTGACCAAGTTGGTAATGAATATGCTGAACCTTCGGAACCTGA
GTCGTCTACATTCCAAATACTTCCTTTACTTCAAACATCATTTCGTCAATGTTTCACTCC
CTCCACTTTATAAGGAGTTATTTTTCGTCGACGAGAACCAACCTCCCCAGCACTTTGCCC
CGAACCCCGCTTTTAATCAGCAACGTCGTACAAGTAACGATCCACAAGAGAACGAATACC
ACAAGCATAGTTTTCTCGATGGTGGGCTGGCGACAGCGAATGATCTTGGATCTGACGCTA
GCTCAGGTTCATGTGCAATCGACGCCCAATGCGCTATACTACCCGGGGCTGGGTTCGTAC
CTTGTACCAGTCGTTCATCATCGACGTCTTCAGTCAGCAGCAGCGGGACAGCGCCGCTTG
GAAACCTGAGTTGTGACGACATATCACCCATGTTGTCCGACAACAAATCGCTGACCGGGG
ACCAACAGAGCCTTGACCACGTCTCAGTAAATCACTCCGATGACCAGATTCAGCGCAATC
AGTTGGCCGAGGCCGAGCGGTTAATGGAAGCCGCCATGAACGAGCACGTTCCTCACAACT
CCCAGACAGCCTACCCTGTACAAATGACAATGCTAACACAACAGCATCTTCACACACACG
ATGGTAGCCTTGGTGGAATTCCTCATTTATCCATATAAAACTGAACCTCGTAGATCCATC
TTCACAGCGAGCCTTTTTTTCTATTTATTGAGTATATTAAGAACAAGTATTTAGTTAATT
TGCCGACACCGTCTATGCAGTAGCGGTCCGATCCAAAGAGATTTTAGCATCAGTGTTGGC
GACACAGCCCTGGTTGCGCGTAACACTTCTTTTTTCCGCCGAACACTGGTTTTCCTAATT
TGCTCGACTCGTCGTATTCTGTCGGTGCTAAACGTTTCTCGTCGCTTTTGTAAGCATGCA
GTTTAGCTTTTGCACCCGGGACAACATAATAGTGAGCCGTGCATTTATTTCTAATCAACC
AGCTCTGTAATTACCCCCAACCCCTCATAACCGCCTAGGGTTCACTATAGTCTGTAATGC
AATACCTCCGTTTCTAGCATACGTAACCTCATTCTGCATCATAGCTATACACCTAACTTA
ATCCATTCAACGGCAACTATATAACGGACGTCGCATACGCCTCTTGCTTTTTGTGTGGTA
GATTTTGTTAAAACGCTATTCCATGTAATGAAATTTACATTAATCAAAGTCCCGCTGTCT
TTATAAGTGTATTGAGACAAGACTCCATCCAACTTAGCATATTAAACAACCAGCACTGTT
TTGTCGCCACCTTTGTACATAATGTTGCCACAATATTCGCCTGGTCAAAAGGTGTATTCA
TGTTTGGTCGAAGTTCGAATTCTCTCGGCTCCTCTAACCCTCAAATCCACGCATACAGCG
TTATTAAGTCGCCATACCTCACCCCGTTATAACACCTCCGACTTTAAACCACGTTGCATA
TGCGTCAAACCAATCCACCACGTGCAACCATCACTTACTTTTTGATGTTTACTTTGCGCC
GCATTTTTATTCCTTTTTCAATTGTCGTAAAAGCCTTCGCAATCTTCGCTAAATTCACCA
TCACTTGCTTATGACGTCACCGCTTCGGGCCCATGACGTCATCGGTAATGACGTCATCAA
CCGTTTGTACAGCGCTATAATGTCGCCATGTATAGCCCTTCTGCAGCCCACTGTGAAGCC
TCTTCGTTAGTTTCTGTACATAATTCAATTGTTCAATCCCCTACAGCCATAAGAATATAA
AATGACGAACAGTATGTTCAGCGTAACCAGCAATCGAATCCTTTCTTCTTTTTCTCTCAT
GGTTCATTTGAGAAAGACTATCTCATATTTCCTATCGCAAACTATCGCTTGTGTACAGCC
CCGTATTCGCAAATCATTCGACTTTTCTAATGACGCCGTGCACTATGTAGCCAGTATACG
TTGCATTATTGAACCATTCGTCTACAACACAACTGTCGAGTATTCAGTATCTGCATACAC
GGTCGCTTTTATCATTCTCATTATCACAGTGCGCTTCTAAAAGGTGTTGCCCCAGCGTGT
AAGGTTTTTGCTTCTTACCTGCTCTTTCTGCTGTCTTTCTTATTGTGCCGCGTTCTCATA
AACGCCTTAAAGGGGAGCGCCAAAATATTAAACATATTTCACACTTCCA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[168-276] 2.3E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[173-248] 19.901 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[173-244] 9.0E-39 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[175-243] 6.1E-32 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[176-192] 6.8E-18 - T[192-207] 6.8E-18 - T[225-233] 6.8E-18 - T[233-241] 6.8E-18 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[176-202] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[237-247] 1.2E-15 - T[446-467] 1.2E-15 - T[467-483] 1.2E-15 - T[533-548] 1.2E-15 - T[590-607] 1.2E-15 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[388-631] 9.18E-57 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[443-464] 4.2E-9 - T[469-488] 4.2E-9 - T[533-555] 4.2E-9 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[445-602] 6.1E-20 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[448-612] 8.2E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RORG_HUMAN | 41.468 % | 344 | 2.25E-109 |
| RORB_HUMAN | 45.073 % | 372 | 8.58E-121 |
| RORA_HUMAN | 45.148 % | 377 | 3.23E-122 |