- Transcript 'KH2012:KH.C3.17.v4.R...'
Transcript Model
Transcript Id
KH2012:KH.C3.17.v4.R.nonSL4-1
Possible name(s)
RORA; RORB; RORC
Gene model
Location
KhC3 [396,585 / 406,617]
Amino acid sequence
Length: 662
>KH.C3.17.v4.R.nonSL4-1
TFEELRWRDAYRNIPARAQIEIIPCKVCGDKSSGIHYGVITCEGCKGFFRRSQQNNYAYS
CPRHGNCIIDRSNRNRCQHCRLQKCLRAGMSKDAVKFGRMSKKQRDRLYLEVLKQQQMRA
GQPQVESEAFNQTKPNTVTHSSPTESNVTPYYASAEPRNDVIPTYQDTSPPSMHGGDVMV
KIEPPNETAYSQTHGPLTPPAPQTIPVEPKSTEYSVTKNHYYDVPTSSAEPQSNPVPNFD
ISENLVSNICEAYYKTCQYSREELASYSKAVRSQEGTLQFQNMAPDQLWGLCAEKITEAI
QHVVEFAKHSNAFMSFDQHDQIILLKTGCLEVVLVRMARAFNITNQTVLFDEKYTPIETF
RSLGCDDLISGMFEMAKSIAELNLTEDQIALFSFAVLITGDRPGLWESNRLNKLQSVVLG
SLQEMFHKTHSDPPDILTKLVMNMLNLRNLSRLHSKYFLYFKHHFVNVSLPPLYKELFFV
DENQPPQHFAPNPAFNQQRRTSNDPQENEYHKHSFLDGGLATANDLGSDASSGSCAIDAQ
CAILPGAGFVPCTSRSSSTSSVSSSGTAPLGNLSCDDISPMLSDNKSLTGDQQSLDHVSV
NHSDDQIQRNQLAEAERLMEAAMNEHVPHNSQTAYPVQMTMLTQQHLHTHDGSLGGIPHL
SI
Nucleotide sequence
Length: 3,501
>KH2012:KH.C3.17.v4.R.nonSL4-1
TACATTTGAGGAATTGCGTTGGCGAGATGCGTATCGTAATATCCCAGCCCGTGCTCAAAT
TGAGATCATCCCGTGTAAGGTGTGTGGAGACAAATCATCAGGAATCCACTATGGTGTTAT
AACGTGCGAAGGGTGCAAGGGCTTCTTTCGTCGTAGCCAACAGAACAACTATGCATACTC
ATGCCCACGTCACGGAAATTGCATCATAGACCGAAGTAATAGAAACAGATGCCAACATTG
CCGGCTGCAGAAATGTCTCAGGGCTGGAATGTCAAAAGACGCTGTCAAGTTTGGCCGTAT
GTCTAAGAAGCAAAGAGATCGTCTTTACCTCGAAGTTTTAAAGCAGCAACAAATGAGAGC
TGGCCAACCGCAAGTTGAAAGTGAGGCTTTTAATCAAACGAAGCCCAACACAGTAACACA
CAGCTCCCCGACGGAATCAAACGTCACACCATATTATGCATCAGCGGAGCCGCGAAATGA
CGTCATTCCGACGTACCAAGACACCTCCCCACCCTCCATGCATGGTGGTGACGTAATGGT
TAAGATCGAACCCCCAAATGAAACAGCTTACAGTCAAACCCACGGCCCTCTAACCCCACC
AGCCCCCCAAACCATCCCGGTAGAACCAAAATCAACCGAGTATTCCGTCACAAAGAACCA
TTATTACGATGTGCCTACGTCATCAGCCGAACCACAATCGAACCCGGTTCCTAACTTCGA
TATCTCTGAGAACCTTGTGAGCAATATATGCGAGGCTTACTACAAAACGTGTCAGTATTC
CCGAGAGGAACTTGCCAGTTATTCTAAAGCTGTTCGCTCCCAGGAAGGGACACTCCAGTT
TCAAAATATGGCACCAGATCAGTTATGGGGTTTATGTGCAGAGAAAATAACAGAAGCAAT
ACAACATGTCGTCGAGTTCGCTAAACATTCAAACGCTTTTATGTCGTTTGATCAGCACGA
TCAAATCATTCTGCTCAAAACAGGTTGTCTTGAAGTAGTGTTGGTTCGCATGGCCCGTGC
TTTCAACATCACCAACCAGACTGTTCTATTTGATGAGAAATACACGCCAATAGAAACCTT
TAGAAGTCTTGGTTGTGACGACTTGATAAGCGGAATGTTTGAAATGGCGAAATCCATCGC
TGAACTGAACCTTACTGAGGATCAGATCGCTTTGTTCTCGTTTGCAGTTCTTATTACTGG
AGATCGTCCAGGTTTATGGGAATCGAACCGCCTCAACAAACTCCAGTCTGTTGTTTTGGG
GTCTCTGCAAGAAATGTTTCATAAAACCCATAGCGACCCACCCGATATTTTGACCAAGTT
GGTAATGAATATGCTGAACCTTCGGAACCTGAGTCGTCTACATTCCAAATACTTCCTTTA
CTTCAAACATCATTTCGTCAATGTTTCACTCCCTCCACTTTATAAGGAGTTATTTTTCGT
CGACGAGAACCAACCTCCCCAGCACTTTGCCCCGAACCCCGCTTTTAATCAGCAACGTCG
TACAAGTAACGATCCACAAGAGAACGAATACCACAAGCATAGTTTTCTCGATGGTGGGCT
GGCGACAGCGAATGATCTTGGATCTGACGCTAGCTCAGGTTCATGTGCAATCGACGCCCA
ATGCGCTATACTACCCGGGGCTGGGTTCGTACCTTGTACCAGTCGTTCATCATCGACGTC
TTCAGTCAGCAGCAGCGGGACAGCGCCGCTTGGAAACCTGAGTTGTGACGACATATCACC
CATGTTGTCCGACAACAAATCGCTGACCGGGGACCAACAGAGCCTTGACCACGTCTCAGT
AAATCACTCCGATGACCAGATTCAGCGCAATCAGTTGGCCGAGGCCGAGCGGTTAATGGA
AGCCGCCATGAACGAGCACGTTCCTCACAACTCCCAGACAGCCTACCCTGTACAAATGAC
AATGCTAACACAACAGCATCTTCACACACACGATGGTAGCCTTGGTGGAATTCCTCATTT
ATCCATATAAAACTGAACCTCGTAGATCCATCTTCACAGCGAGCCTTTTTTTCTATTTAT
TGAGTATATTAAGAACAAGTATTTAGTTAATTTGCCGACACCGTCTATGCAGTAGCGGTC
CGATCCAAAGAGATTTTAGCATCAGTGTTGGCGACACAGCCCTGGTTGCGCGTAACACTT
CTTTTTTCCGCCGAACACTGGTTTTCCTAATTTGCTCGACTCGTCGTATTCTGTCGGTGC
TAAACGTTTCTCGTCGCTTTTGTAAGCATGCAGTTTAGCTTTTGCACCCGGGACAACATA
ATAGTGAGCCGTGCATTTATTTCTAATCAACCAGCTCTGTAATTACCCCCAACCCCTCAT
AACCGCCTAGGGTTCACTATAGTCTGTAATGCAATACCTCCGTTTCTAGCATACGTAACC
TCATTCTGCATCATAGCTATACACCTAACTTAATCCATTCAACGGCAACTATATAACGGA
CGTCGCATACGCCTCTTGCTTTTTGTGTGGTAGATTTTGTTAAAACGCTATTCCATGTAA
TGAAATTTACATTAATCAAAGTCCCGCTGTCTTTATAAGTGTATTGAGACAAGACTCCAT
CCAACTTAGCATATTAAACAACCAGCACTGTTTTGTCGCCACCTTTGTACATAATGTTGC
CACAATATTCGCCTGGTCAAAAGGTGTATTCATGTTTGGTCGAAGTTCGAATTCTCTCGG
CTCCTCTAACCCTCAAATCCACGCATACAGCGTTATTAAGTCGCCATACCTCACCCCGTT
ATAACACCTCCGACTTTAAACCACGTTGCATATGCGTCAAACCAATCCACCACGTGCAAC
CATCACTTACTTTTTGATGTTTACTTTGCGCCGCATTTTTATTCCTTTTTCAATTGTCGT
AAAAGCCTTCGCAATCTTCGCTAAATTCACCATCACTTGCTTATGACGTCACCGCTTCGG
GCCCATGACGTCATCGGTAATGACGTCATCAACCGTTTGTACAGCGCTATAATGTCGCCA
TGTATAGCCCTTCTGCAGCCCACTGTGAAGCCTCTTCGTTAGTTTCTGTACATAATTCAA
TTGTTCAATCCCCTACAGCCATAAGAATATAAAATGACGAACAGTATGTTCAGCGTAACC
AGCAATCGAATCCTTTCTTCTTTTTCTCTCATGGTTCATTTGAGAAAGACTATCTCATAT
TTCCTATCGCAAACTATCGCTTGTGTACAGCCCCGTATTCGCAAATCATTCGACTTTTCT
AATGACGCCGTGCACTATGTAGCCAGTATACGTTGCATTATTGAACCATTCGTCTACAAC
ACAACTGTCGAGTATTCAGTATCTGCATACACGGTCGCTTTTATCATTCTCATTATCACA
GTGCGCTTCTAAAAGGTGTTGCCCCAGCGTGTAAGGTTTTTGCTTCTTACCTGCTCTTTC
TGCTGTCTTTCTTATTGTGCCGCGTTCTCATAAACGCCTTAAAGGGGAGCGCCAAAATAT
TAAACATATTTCACACTTCCA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[17-125] 1.7E-34 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[22-93] 9.0E-39 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[22-97] 19.901 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[24-92] 4.6E-32 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[25-41] 3.2E-18 - T[41-56] 3.2E-18 - T[74-82] 3.2E-18 - T[82-90] 3.2E-18 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[25-51] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[86-96] 4.8E-16 - T[295-316] 4.8E-16 - T[316-332] 4.8E-16 - T[382-397] 4.8E-16 - T[439-456] 4.8E-16 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[237-480] 6.03E-57 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[292-313] 2.4E-9 - T[318-337] 2.4E-9 - T[382-404] 2.4E-9 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[294-451] 6.1E-20 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[297-461] 5.8E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RORG_HUMAN | 41.468 % | 345 | 1.74E-111 |
| RORB_HUMAN | 45.073 % | 372 | 1.08E-122 |
| RORA_HUMAN | 45.148 % | 377 | 8.32E-124 |