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- Transcript 'KH2012:KH.C3.17.v5.A...'
Transcript Model
Transcript Id
KH2012:KH.C3.17.v5.A.SL5-1
Possible name(s)
RORA; RORB; RORC
Gene model
Location
KhC3 [396,585 / 407,133]
Amino acid sequence
Length: 634
>KH.C3.17.v5.A.SL5-1
GVWRQIIRNPLWCYNVRRGFFRRSQQNNYAYSCPRHGNCIIDRSNRNRCQHCRLQKCLRA
GMSKDAVKFGRMSKKQRDRLYLEVLKQQQMRAGQPQVESEAFNQTKPNTVTHSSPTESNV
TPYYASAEPRNDVIPTYQDTSPPSMHGGDVMVKIEPPNETAYSQTHGPLTPPAPQTIPVE
PKSTEYSVTKNHYYDVPTSSAEPQSNPVPNFDISENLVSNICEAYYKTCQYSREELASYS
KAVRSQEGTLQFQNMAPDQLWGLCAEKITEAIQHVVEFAKHSNAFMSFDQHDQIILLKTG
CLEVVLVRMARAFNITNQTVLFDEKYTPIETFRSLGCDDLISGMFEMAKSIAELNLTEDQ
IALFSFAVLITGDRPGLWESNRLNKLQSVVLGSLQEMFHKTHSDPPDILTKLVMNMLNLR
NLSRLHSKYFLYFKHHFVNVSLPPLYKELFFVDENQPPQHFAPNPAFNQQRRTSNDPQEN
EYHKHSFLDGGLATANDLGSDASSGSCAIDAQCAILPGAGFVPCTSRSSSTSSVSSSGTA
PLGNLSCDDISPMLSDNKSLTGDQQSLDHVSVNHSDDQIQRNQLAEAERLMEAAMNEHVP
HNSQTAYPVQMTMLTQQHLHTHDGSLGGIPHLSI
Nucleotide sequence
Length: 4,010
>KH2012:KH.C3.17.v5.A.SL5-1
GTTCCTATCTGATTTAAAAAAGCGAACCTAGTAAAGCATGAGTTCTGGTTCTCAGCGAAG
ATAAATCATAAACGCAAAAGTAACTTGTGCGATCCAAATGAAGATGAATAACGTGGAGTA
TCCAGAGAGGCATCAATCGACCCGAGAAATGCTTCATTGCCGTGATTATGGTGAAGTCGG
AACTTTAAGTCCAGTTATAGCTACCCACAACCCCCACGCACAAGTTCAGCACTTAGTTGG
CTTTCAGCATACTCCCCAACCTGGTGCCGATCACCTGCATAACACGCCTTATCCGATTGC
CTTCGGAAACCCACAAAGGGCGCCAAGTTCCTTTGTACCCTTGGGTGAAAATGAACCCCC
TGAACATTGTGCGCCGTCGGTCAACGGTCGTTCTTACAATTCAAATGCAATTTCTTTGTA
CGGTTACAATCACCATCCGTCTAGCCCTAACATTTCAAGTCCCCTTGAAACTGGCTGGCC
GGACAACACGCCCAGTCCCAACAATGGTCGAACCCCTACATTTGAGGAATTGCGTTGGCG
AGATGCGTATCGTAATATCCCAGCCCGTGCTCAAATTGAGATCATCCCGTGTAAGGTGTG
TGGAGACAAATCATCAGGAATCCACTATGGTGTTATAACGTGCGAAGGGGCTTCTTTCGT
CGTAGCCAACAGAACAACTATGCATACTCATGCCCACGTCACGGAAATTGCATCATAGAC
CGAAGTAATAGAAACAGATGCCAACATTGCCGGCTGCAGAAATGTCTCAGGGCTGGAATG
TCAAAAGACGCTGTCAAGTTTGGCCGTATGTCTAAGAAGCAAAGAGATCGTCTTTACCTC
GAAGTTTTAAAGCAGCAACAAATGAGAGCTGGCCAACCGCAAGTTGAAAGTGAGGCTTTT
AATCAAACGAAGCCCAACACAGTAACACACAGCTCCCCGACGGAATCAAACGTCACACCA
TATTATGCATCAGCGGAGCCGCGAAATGACGTCATTCCGACGTACCAAGACACCTCCCCA
CCCTCCATGCATGGTGGTGACGTAATGGTTAAGATCGAACCCCCAAATGAAACAGCTTAC
AGTCAAACCCACGGCCCTCTAACCCCACCAGCCCCCCAAACCATCCCGGTAGAACCAAAA
TCAACCGAGTATTCCGTCACAAAGAACCATTATTACGATGTGCCTACGTCATCAGCCGAA
CCACAATCGAACCCGGTTCCTAACTTCGATATCTCTGAGAACCTTGTGAGCAATATATGC
GAGGCTTACTACAAAACGTGTCAGTATTCCCGAGAGGAACTTGCCAGTTATTCTAAAGCT
GTTCGCTCCCAGGAAGGGACACTCCAGTTTCAAAATATGGCACCAGATCAGTTATGGGGT
TTATGTGCAGAGAAAATAACAGAAGCAATACAACATGTCGTCGAGTTCGCTAAACATTCA
AACGCTTTTATGTCGTTTGATCAGCACGATCAAATCATTCTGCTCAAAACAGGTTGTCTT
GAAGTAGTGTTGGTTCGCATGGCCCGTGCTTTCAACATCACCAACCAGACTGTTCTATTT
GATGAGAAATACACGCCAATAGAAACCTTTAGAAGTCTTGGTTGTGACGACTTGATAAGC
GGAATGTTTGAAATGGCGAAATCCATCGCTGAACTGAACCTTACTGAGGATCAGATCGCT
TTGTTCTCGTTTGCAGTTCTTATTACTGGAGATCGTCCAGGTTTATGGGAATCGAACCGC
CTCAACAAACTCCAGTCTGTTGTTTTGGGGTCTCTGCAAGAAATGTTTCATAAAACCCAT
AGCGACCCACCCGATATTTTGACCAAGTTGGTAATGAATATGCTGAACCTTCGGAACCTG
AGTCGTCTACATTCCAAATACTTCCTTTACTTCAAACATCATTTCGTCAATGTTTCACTC
CCTCCACTTTATAAGGAGTTATTTTTCGTCGACGAGAACCAACCTCCCCAGCACTTTGCC
CCGAACCCCGCTTTTAATCAGCAACGTCGTACAAGTAACGATCCACAAGAGAACGAATAC
CACAAGCATAGTTTTCTCGATGGTGGGCTGGCGACAGCGAATGATCTTGGATCTGACGCT
AGCTCAGGTTCATGTGCAATCGACGCCCAATGCGCTATACTACCCGGGGCTGGGTTCGTA
CCTTGTACCAGTCGTTCATCATCGACGTCTTCAGTCAGCAGCAGCGGGACAGCGCCGCTT
GGAAACCTGAGTTGTGACGACATATCACCCATGTTGTCCGACAACAAATCGCTGACCGGG
GACCAACAGAGCCTTGACCACGTCTCAGTAAATCACTCCGATGACCAGATTCAGCGCAAT
CAGTTGGCCGAGGCCGAGCGGTTAATGGAAGCCGCCATGAACGAGCACGTTCCTCACAAC
TCCCAGACAGCCTACCCTGTACAAATGACAATGCTAACACAACAGCATCTTCACACACAC
GATGGTAGCCTTGGTGGAATTCCTCATTTATCCATATAAAACTGAACCTCGTAGATCCAT
CTTCACAGCGAGCCTTTTTTTCTATTTATTGAGTATATTAAGAACAAGTATTTAGTTAAT
TTGCCGACACCGTCTATGCAGTAGCGGTCCGATCCAAAGAGATTTTAGCATCAGTGTTGG
CGACACAGCCCTGGTTGCGCGTAACACTTCTTTTTTCCGCCGAACACTGGTTTTCCTAAT
TTGCTCGACTCGTCGTATTCTGTCGGTGCTAAACGTTTCTCGTCGCTTTTGTAAGCATGC
AGTTTAGCTTTTGCACCCGGGACAACATAATAGTGAGCCGTGCATTTATTTCTAATCAAC
CAGCTCTGTAATTACCCCCAACCCCTCATAACCGCCTAGGGTTCACTATAGTCTGTAATG
CAATACCTCCGTTTCTAGCATACGTAACCTCATTCTGCATCATAGCTATACACCTAACTT
AATCCATTCAACGGCAACTATATAACGGACGTCGCATACGCCTCTTGCTTTTTGTGTGGT
AGATTTTGTTAAAACGCTATTCCATGTAATGAAATTTACATTAATCAAAGTCCCGCTGTC
TTTATAAGTGTATTGAGACAAGACTCCATCCAACTTAGCATATTAAACAACCAGCACTGT
TTTGTCGCCACCTTTGTACATAATGTTGCCACAATATTCGCCTGGTCAAAAGGTGTATTC
ATGTTTGGTCGAAGTTCGAATTCTCTCGGCTCCTCTAACCCTCAAATCCACGCATACAGC
GTTATTAAGTCGCCATACCTCACCCCGTTATAACACCTCCGACTTTAAACCACGTTGCAT
ATGCGTCAAACCAATCCACCACGTGCAACCATCACTTACTTTTTGATGTTTACTTTGCGC
CGCATTTTTATTCCTTTTTCAATTGTCGTAAAAGCCTTCGCAATCTTCGCTAAATTCACC
ATCACTTGCTTATGACGTCACCGCTTCGGGCCCATGACGTCATCGGTAATGACGTCATCA
ACCGTTTGTACAGCGCTATAATGTCGCCATGTATAGCCCTTCTGCAGCCCACTGTGAAGC
CTCTTCGTTAGTTTCTGTACATAATTCAATTGTTCAATCCCCTACAGCCATAAGAATATA
AAATGACGAACAGTATGTTCAGCGTAACCAGCAATCGAATCCTTTCTTCTTTTTCTCTCA
TGGTTCATTTGAGAAAGACTATCTCATATTTCCTATCGCAAACTATCGCTTGTGTACAGC
CCCGTATTCGCAAATCATTCGACTTTTCTAATGACGCCGTGCACTATGTAGCCAGTATAC
GTTGCATTATTGAACCATTCGTCTACAACACAACTGTCGAGTATTCAGTATCTGCATACA
CGGTCGCTTTTATCATTCTCATTATCACAGTGCGCTTCTAAAAGGTGTTGCCCCAGCGTG
TAAGGTTTTTGCTTCTTACCTGCTCTTTCTGCTGTCTTTCTTATTGTGCCGCGTTCTCAT
AAACGCCTTAAAGGGGAGCGCCAAAATATTAAACATATTTCACACTTCCA
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[1-69] 12.401 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[11-97] 1.5E-18 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[13-65] 1.3E-7 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[18-64] 4.7E-16 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[58-68] 3.9E-16 - T[267-288] 3.9E-16 - T[288-304] 3.9E-16 - T[354-369] 3.9E-16 - T[411-428] 3.9E-16 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[209-452] 5.51E-57 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[264-285] 2.1E-9 - T[290-309] 2.1E-9 - T[354-376] 2.1E-9 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[266-423] 6.1E-20 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[269-433] 5.3E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RORG_HUMAN | 38.445 % | 284 | 1.92E-88 |
| RORB_HUMAN | 41.834 % | 309 | 1.74E-98 |
| RORA_HUMAN | 41.928 % | 315 | 4.12E-100 |