- Transcript 'KH2012:KH.L172.26.v1...' >
- Transcript 'KH2012:KH.C4.420.v1....' >
- Transcript 'KH2012:KH.C8.97.v1.A...' >
- Transcript 'KH2012:KH.L4.55.v1.A...' >
- Transcript 'KH2012:KH.C3.173.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.173.v1.A.ND1-1
Possible name(s)
CFAP52; EML6; WDR90
Gene model
Location
KhC3 [4,132,421 / 4,144,808]
Amino acid sequence
Length: 602
>KH.C3.173.v1.A.ND1-1
INMGSPRHPSYIGLRCKQRVRVYCGCGYDGGLGWGWGSRGVTRGLRGLNITMPRETAICE
NGTMSQEKPTRENETMTRENGTITQEKVTHKNGILSQKNERNTMTQQNEDAGIPSSIDRD
AAPTEDEEVDGVPVKRAWGSLRSTSGAVEEEEEVLISCDPPSVVSHFVPTTNYTQLASRT
YTAPSGEEGLKLKAVVGYNGNGRHNLCWNPYTGTLAYSCGNVVVIEILQTSEKQYLLEHE
EEISCLAIQHDGEILASASGSNGLVQSIICLWDINTGVCRAKLKHHEYSVVSMAYSRDDR
FLVTVGDYQENSLAVWSAFDGESPPMLLASTKTNHSINQVTWDPSNPNEFVTVGSSSSLL
FWMLEEVGEQVKLHLHEGEVPDAIEKDGNKKKIHFTAACFNEDRTLYAGTNIGVVTAWDT
TTNECFLHWRADSAEIVVMQARAWRLLVAGVSRSARIWSLAGSKDPTNESGGMFVLEHEL
SVHGEIISGSFDESLDIGIVGTTSSTVWYMDWNERSTIKLVSGHKDKINGISFDNNGHFA
TCSEDGVVQLWSEHTLEMAAQFQVSSRPIMYLRCVQSFKRDTNCRTTKYGRSWLFRRNHP
CV
Nucleotide sequence
Length: 3,601
>KH2012:KH.C3.173.v1.A.ND1-1
CTCCGGTGAAAGATTGATCAGCGCGTGCGAGAAAGGAACGCTAGCTTTATTCGATACATC
AGATATAGAGAAAGCTGGGGCACCAATGATAAGGATATTGACAAAGACAGCAGCACGTGG
TGCGTATGGCCCACGTAGTATTGCTACAAGCCATGATGGAAGATGGGTGGCTTACATTGG
ACCGAATGAGTTTACAATATCCATTGCATCATCAGCTACACTCAACCAAGTTATGAGGAT
TGATGTTTCAACTGGTGTCAAGTTAGACCCTGATATACTTGGCCAAAGATCTAAGATCGA
CCCTCCCCTACGTGTGCTGTTCTCCCCACCACCTGTCAATCATCTGCTGGTCGTAACCAA
GGGCAACCGGCTGTTGAAACTCGATTCAAAAACTGGAAGTTTGATTTCTGTAACTGAGAA
TATCCACAGAGGAAACACAAATGTAGTTTGTGTGACTGATGACTGCAGCCATCTAGTGTC
AGCTGGTGATAAACTTATCAAGGTTTGGGATTATAAAATGTCAAAGGACTTGGATCACCA
GGCGTTTATTGGTCACAGTTCACCAGTTCATCGGATTATGTTCACGCCTGATCGATTATC
GTTGATTACAGCCAGCGAGGGCGCTATATTCATTTGGGACTTCTTGGGGAATTCCCATAC
CCCTATTGCCCCCGTAACCATGGATACGACCCATGTTATTGGGTTGGGACGAAGTGTAAA
GGAGGGTTTGCTGATGTCAGCAAGAAAATCAGAAGATGAAAGTGGCAGTGAAGAGGAGCC
AGAGCCCCGGGAATCTCCTCCTGCCCCCACGGCCCCAACCCGGGTGAATGAATCAACATG
GGTTCCCCCCGACACCCTTCGTACATCGGACTTAGATGCAAGCAACGTGTCCGAGTTTAC
TGTGGATGTGGATATGATGGCGGACTTGGTTGGGGGTGGGGGTCTCGTGGGGTTACTAGG
GGTTTGAGGGGTTTGAATATCACTATGCCGCGTGAAACAGCAATTTGTGAAAATGGAACT
ATGAGTCAGGAAAAACCGACTCGTGAAAACGAAACAATGACTCGAGAAAATGGAACAATT
ACTCAGGAAAAAGTGACTCATAAAAACGGAATATTAAGTCAAAAAAATGAGCGGAATACA
ATGACTCAGCAAAATGAAGATGCGGGGATTCCATCTTCTATTGATAGGGATGCGGCTCCT
ACTGAGGATGAAGAAGTCGATGGAGTTCCTGTCAAGCGCGCATGGGGTAGTTTGAGATCA
ACATCCGGAGCTGTGGAGGAGGAGGAAGAGGTTTTGATCTCATGTGATCCTCCATCAGTA
GTTTCGCATTTCGTTCCAACCACCAACTACACACAACTCGCATCTCGGACCTATACTGCC
CCAAGTGGTGAAGAGGGGTTAAAGTTAAAAGCTGTGGTTGGTTACAATGGCAACGGACGT
CACAACTTATGTTGGAATCCTTACACTGGGACACTCGCTTATTCATGCGGTAACGTGGTT
GTCATAGAAATCTTACAAACGTCCGAGAAACAATATTTACTTGAGCACGAGGAGGAAATT
TCATGTTTGGCAATTCAACATGATGGAGAGATCTTGGCTTCAGCATCTGGTAGCAATGGA
TTGGTGCAAAGTATAATATGTTTATGGGATATCAATACTGGAGTATGTAGGGCAAAATTA
AAACACCATGAATATTCTGTCGTTAGTATGGCATATTCAAGGGATGACAGGTTCCTGGTC
ACGGTTGGTGATTATCAGGAAAATTCACTCGCTGTATGGAGTGCATTTGATGGGGAATCC
CCTCCTATGTTACTGGCTTCAACCAAAACAAACCACTCGATAAACCAGGTAACATGGGAT
CCCTCCAACCCGAATGAGTTTGTCACCGTTGGCTCTTCTTCCTCTTTATTGTTCTGGATG
CTGGAGGAGGTTGGGGAGCAGGTGAAGCTTCATCTGCACGAGGGTGAGGTCCCGGATGCG
ATCGAAAAAGATGGAAATAAAAAGAAAATTCATTTCACGGCAGCTTGTTTTAACGAGGAT
AGGACATTGTATGCCGGCACAAACATAGGTGTTGTGACAGCATGGGACACAACAACCAAC
GAATGTTTTCTCCATTGGAGGGCAGACTCCGCTGAGATCGTCGTCATGCAGGCCCGCGCT
TGGCGTCTTTTGGTTGCGGGGGTGTCAAGGTCTGCTAGAATCTGGTCACTAGCTGGCAGT
AAAGATCCAACGAACGAATCTGGAGGAATGTTTGTGCTCGAACATGAACTCTCAGTTCAT
GGGGAGATAATCTCTGGTTCATTCGACGAGTCGCTCGACATCGGGATTGTGGGAACCACT
AGCTCCACCGTGTGGTACATGGATTGGAACGAGAGGTCGACAATCAAGCTCGTCAGCGGA
CATAAAGACAAGATTAACGGGATAAGTTTTGACAACAACGGACATTTTGCGACATGTTCC
GAGGATGGGGTGGTACAACTGTGGTCGGAACATACTTTGGAAATGGCAGCACAGTTTCAA
GTCAGTTCTCGGCCAATCATGTACCTCCGTTGTGTTCAGTCATTCAAGCGCGACACAAAC
TGTAGGACCACCAAATATGGTCGCAGCTGGTTATTCCGACGGAACCATCCGTGTGTTTGA
TATTGACAAGTTAATTCTTAAACTGAAGCTTCAACCCCACCCCACTGTCGTCACTTCGTT
GCAATTTTCCTCCGATAATAATACCCTGCTCTCTGGCGCCTCCGATGGTACAATTGCTGT
AACATCTTTGGCCACCGGTGTTACTCTACGCGTGCTGCGTGACCACAAGGGTGCTCCGAT
AAATAATATTTCAGTTTCTGCTAGAGAAGTAAGAATACTAAGAATGAATCATTCTCCGAG
GCTGAGTTTGTTCTGTAGCGCAGATCGTCGTGTATCAGTGTGGGACACTGAATGGCAGCA
TGATGTATGTAACATGATCGACTGGTTGACCTTTCCTGCTCCCTGCTTTGCTCCAGATGG
GACCAAACTTAATCTCGATGATAAGAACCATCATAAATTTGTCCCACCAAGTTTCTGTAA
GTTTCATCCCACTGATCCGGACTTGCTTGTTTATTGTGGATATGGTTTGACTAAATCTTT
ACAACTCTATAGTCTGGCCAAACGGAAGGTTGTTAAGACTATTCCGCTACCAAATTGGGC
TGACTGTTTTGATCTACATGGCCAGTTATGTGTGGTGGGTACCTCGTCACGGTTGGTTGA
ATTAGTTGACGTCACACACGGGACGTTTCAAGATTACGTCGGCCATGGTCGTGACGTCAC
TCAAGCTGCGTTTTCACCTTCTGGGAAGCTGCTCCTGACTGCCTCTGGCGGAGAACTATT
TGTATGGGATGTTTGTGTTGGAAAAACATCCTAAAAAGCGTTTTCATTCTACAGATTTTT
GTAATAGTTGTAGTTTTTTACTATTTATACCGTATTGCCTACTGTGTATTTCATATCGTT
CCTAAGTTTTAGGTTTATCTCTAGATGCCAATGTAAACCACATACGCTGCTATTTAATCA
TAACGCGGCCCGATGTGCTTTAGTTTTTATAGTGTTTTCAATAAAACTATTTTCGTAGAA
A
| PANTHER |
WDR90 (IPR030466) - T[160-583] 4.4E-136 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[198-469] 8.3E-42 - T[476-584] 2.4E-9 |
| SMART |
WD40_repeat (IPR001680) - T[230-273] 0.048 - T[276-317] 0.12 - T[324-363] 1.9 - T[422-459] 83.0 - T[514-552] 2.2E-6 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[234-563] 1.24E-36 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[236-561] 11.26 |
| Pfam |
WD40_repeat (IPR001680) - T[519-552] 6.1E-5 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[521-561] 10.776 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR90_HUMAN | 36.165 % | 280 | 1.71E-81 |
| CFA52_HUMAN | 23.784 % | 84.3 | 5.28E-17 |