- Transcript 'KH2012:KH.L10.5.v1.A...' >
- Transcript 'KH2012:KH.C3.316.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.316.v1.R.ND2-1
Possible name(s)
COMP; THBS3; THBS4
Gene model
Location
KhC3 [6,601,571 / 6,616,271]
Amino acid sequence
Length: 1,133
>KH.C3.316.v1.R.ND2-1
TEMTAVRYLVAILSFSVCCSSAGSERISKDLTSVLQDIHHEMKEQILEARALRTTIQQCT
LCKSSDDIIEVEPVVNCSSQPCHPGVECMDTPDGFQCGECPIGFHGNGSLCEDIDECLND
PCSPLTSCQNTAGSFNCSPCPSGYDETMEDVIVGGTIVTRQMCSDYNECKVNNGGCVKYS
VCHNLPGASRCGRCIEGFTGNQTIGCTKIRHCSDGGVNPCDINADCTIINKREKYGCECR
VGYAGNGFVCGNDTDHDGFPDIRMPCHHKHCRQDNCPDVPNSGQEDSDNDGVGDACDDDA
DNDGIPNTEDNCILVPNSDQQNSDTDTFGDACDNCPNVKNPKQVDTDGNGEGDECDNDID
GDGISNNADNCPLTPNHDQEDQDMDQVGDACDNCLTISNILQTDTDNDLLGDMCDNDADA
DGDGHQNSVDNCPFVINNAQLDTDNDGIGDACDEDDDNDGVPDYGVTNASDNCRLIYNPN
QLDRDGDGIGDACESDKDGDQVSDWKDACPENAEVTTTDFRTYQSVILDPKGDAQVDPHW
VILNKGMEIVQTQNSDPGLAIGYDSFDGVDFSGTFFVNTATDDDYAGFIFSYQSNSHFYV
VTWKQTEQTYWSATPFRAVAQPGLQLKAVNSNKGPGERMRNALWHSGDTKDEVKVLWSDP
MNQGWEDKTSYRWELQHRPQVGYIRIRFFRKSNMIADTGPVLDDTVKGGRLGVFCFSQEN
VIWSNLVGHKLYRRTKDNSLVSFVGECQESNCYLDGMTSPATNQASLIPVSINSFAYWQK
LVRSGSGKIELPVDAFVCGTITTTVTSSTSISPKHEKLPAYLLLLPVNVIITVTSEELND
VQDYLIQNFPIERNYEIQGFPAPGFYVLTIDDPKCIRWATAFKPEVRHIQLPAKRGPLAW
NINDDLCCTSCRTEGPIRFECSRCYDVINVPTSLNTSPLSSPRRRSSSLRSLDQSCACSC
HHSDVTVIEGALMTSVYFRFDWTFMRMRRFLSLVVKKEEQILLKDFNFRFNAAKRLLRHT
PSSNDNASLIVAQQLGDSDVRHNWTTIISADIITRDNCDGMKTLCYVMSPASLTSCCHAT
IQRIFYDVAASMTKQTNYSRIEVEVSNRIKKLKLPESLKFFLMSQATYPSIVR
Nucleotide sequence
Length: 3,900
>KH2012:KH.C3.316.v1.R.ND2-1
TTGAGTGAAGCACATAAACTGAGATGACTGCTGTTAGATATTTAGTGGCGATCTTGTCGT
TTTCGGTATGCTGTAGTTCTGCGGGTAGTGAACGTATATCTAAAGATTTGACTTCAGTAT
TACAAGACATCCATCATGAAATGAAGGAACAAATATTGGAAGCAAGAGCTTTAAGAACAA
CAATACAGCAATGCACATTGTGCAAATCAAGTGATGACATCATAGAAGTTGAGCCAGTTG
TGAATTGTTCCAGCCAACCTTGTCATCCAGGTGTTGAATGTATGGACACCCCTGATGGGT
TTCAATGTGGAGAATGCCCTATAGGGTTCCATGGTAACGGAAGTTTATGCGAGGACATTG
ATGAGTGCTTGAACGACCCCTGTTCACCTTTGACCTCGTGTCAAAATACGGCCGGGAGTT
TTAATTGTTCCCCATGTCCGAGTGGGTATGATGAAACAATGGAAGATGTCATCGTGGGCG
GGACCATTGTTACAAGACAGATGTGTAGCGATTACAACGAGTGTAAAGTTAACAACGGAG
GTTGCGTCAAATATTCTGTTTGTCATAATTTACCTGGAGCATCAAGATGCGGAAGATGCA
TCGAAGGTTTTACGGGAAACCAAACAATCGGTTGTACGAAGATACGCCATTGTAGTGATG
GAGGTGTGAACCCGTGCGATATAAACGCTGATTGCACTATAATAAACAAAAGGGAAAAGT
ACGGGTGTGAGTGTAGAGTAGGATACGCTGGTAATGGATTCGTTTGCGGCAATGATACTG
ACCACGATGGATTCCCTGATATTCGAATGCCTTGTCATCATAAACACTGTAGACAAGATA
ATTGCCCAGATGTCCCCAACAGTGGTCAGGAGGATTCTGACAACGATGGTGTTGGAGACG
CTTGTGATGATGATGCAGATAACGATGGGATTCCAAATACCGAAGATAATTGTATCCTTG
TACCTAACTCTGACCAACAGAACTCTGACACCGACACCTTTGGCGACGCTTGTGATAATT
GTCCGAATGTAAAGAATCCAAAACAAGTGGACACCGATGGTAACGGAGAGGGAGATGAAT
GCGATAATGACATCGATGGAGATGGTATATCAAACAATGCCGACAATTGCCCCTTAACCC
CAAACCACGACCAGGAAGACCAAGACATGGACCAAGTTGGAGATGCTTGTGACAACTGTT
TGACCATCAGTAATATCCTACAAACAGACACCGACAATGACTTGCTTGGTGATATGTGCG
ATAATGATGCAGACGCTGATGGTGACGGACATCAGAACAGTGTTGATAATTGTCCGTTTG
TTATCAACAACGCACAACTTGATACGGACAACGACGGAATCGGCGATGCATGCGATGAGG
ATGACGACAACGACGGAGTCCCCGATTATGGTGTAACAAACGCATCTGATAATTGTCGAT
TAATTTACAACCCTAACCAACTCGACCGTGACGGGGACGGGATCGGTGATGCGTGTGAAA
GCGACAAAGATGGCGACCAAGTTAGTGATTGGAAAGATGCTTGCCCTGAGAATGCTGAAG
TTACAACAACTGACTTCCGAACATACCAGAGTGTCATCCTGGATCCAAAGGGAGACGCAC
AGGTGGATCCTCACTGGGTGATACTTAACAAAGGAATGGAGATTGTCCAAACACAGAATA
GCGATCCTGGACTTGCTATTGGGTACGATTCATTTGATGGGGTTGACTTCAGCGGAACTT
TCTTCGTAAACACGGCAACTGATGACGATTATGCTGGTTTTATATTCAGCTACCAAAGTA
ACTCACATTTCTATGTTGTTACTTGGAAACAAACGGAGCAAACTTATTGGAGCGCGACAC
CGTTCCGCGCCGTTGCACAACCAGGGTTGCAACTTAAGGCAGTGAATTCAAACAAGGGAC
CAGGTGAACGGATGAGGAACGCGTTGTGGCATTCAGGGGATACGAAGGACGAAGTTAAAG
TTCTATGGAGTGATCCCATGAACCAGGGATGGGAGGATAAGACTTCTTATAGATGGGAGT
TACAACATAGACCACAAGTTGGATACATTAGGATCCGTTTCTTCCGCAAATCGAACATGA
TAGCGGACACAGGTCCTGTGTTAGATGACACAGTTAAAGGGGGAAGACTTGGCGTGTTTT
GTTTCAGTCAAGAAAACGTCATCTGGTCGAACCTGGTCGGTCACAAGTTATATAGGAGAA
CAAAAGACAATAGTTTGGTTTCGTTCGTTGGAGAATGCCAGGAAAGCAATTGTTATTTGG
ACGGTATGACGTCACCAGCGACAAATCAAGCTTCGTTGATTCCAGTTTCGATAAATTCAT
TTGCATATTGGCAAAAACTCGTTCGATCCGGTTCGGGTAAAATAGAGCTACCCGTCGATG
CCTTTGTTTGCGGAACAATCACGACCACTGTGACGTCATCAACATCGATTTCACCAAAAC
ACGAGAAACTTCCCGCTTATCTTTTGCTACTGCCAGTAAACGTTATTATCACTGTGACGT
CAGAGGAATTAAATGACGTACAAGATTACCTCATCCAGAATTTTCCGATTGAACGAAACT
ACGAGATTCAGGGATTTCCAGCTCCCGGATTTTACGTATTAACCATCGACGACCCAAAAT
GCATTCGGTGGGCGACCGCGTTCAAACCGGAAGTACGTCATATTCAACTTCCGGCAAAGC
GCGGTCCGCTCGCGTGGAATATCAACGACGACTTGTGCTGCACATCGTGTCGAACTGAAG
GGCCAATCAGATTCGAGTGTTCTCGGTGCTATGACGTCATCAACGTACCTACGTCACTCA
ATACGTCACCGCTTTCGTCACCAAGGCGTAGATCGAGTTCGTTACGAAGTTTGGACCAGA
GCTGCGCGTGCTCGTGTCACCATAGTGACGTCACAGTTATTGAAGGTGCATTAATGACGT
CAGTCTACTTTCGCTTCGATTGGACTTTTATGCGCATGCGCAGATTCCTTAGCTTGGTCG
TCAAGAAAGAAGAACAAATTCTTTTGAAAGATTTTAACTTTCGATTTAACGCCGCAAAGC
GATTGTTACGTCATACACCGTCATCAAACGATAACGCGAGTTTGATTGTTGCGCAACAAT
TGGGTGATTCTGATGTACGTCACAATTGGACGACAATCATTTCAGCGGATATTATAACAA
GAGACAATTGTGACGGAATGAAAACACTTTGTTACGTTATGTCTCCTGCTTCTCTGACGT
CATGTTGCCACGCAACCATTCAACGGATATTCTATGACGTCGCTGCCTCTATGACGAAAC
AAACAAATTATTCTCGAATAGAAGTCGAAGTCAGTAATCGAATAAAGAAACTTAAACTTC
CGGAATCATTGAAGTTCTTTCTGATGTCACAAGCGACTTATCCTTCCATTGTTCGTTAAC
AATTAATTTTACTTTAAATAAATAACGTTGTTATGTTTGTGTGATTACGTGCCCATTTAA
ACATTGATTACACCAATCGTTGTGTCTCTTGGGACCTTCTGGGTGTCGCTTCCATCGCGG
GATTACCTCAAAAGACAACTATGGGGGTTGTGTGACGCACAATGATGATGGTTACGTCAT
AAACATATCGGGCTCCCGAATCAGGGAGACACGCCGGTTGGATTGAGATGCTCTTCGTGG
TATCACCGTATTTGGTGATGACCCGCCGGCTTATTCCAGTGGGTATTGAATTGCAAAGAA
GGCCGTTCATACGAACCGGGCCAGACGCCTAAAGTCATTGCAATGCATTAGTTAGGCCTG
ATAAAGGGTTCGTTTATCACCAAAGAGATGTATTTTTAAATTTATTTTCCCACCCCTGCG
GGTAAAAATAATACACCGTTGTTATGTATTCGTGGGTTATAATAAATGTTCCTGTTTTCA
| PANTHER |
Thrombospondin (IPR037349) - T[29-727] 0.0 |
| Pfam |
Thbs/COMP_coiled-coil (IPR024665) - T[30-63] 6.8E-12 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[73-112] 10.195 - T[208-249] 8.83 |
| SMART |
EGF-like_dom (IPR000742) - T[76-112] 9.9E-4 - T[116-164] 13.0 - T[168-207] 42.0 - T[211-251] 1.4 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[77-112] 0.014 - T[113-164] 9.7E-7 - T[165-207] 0.026 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[113-145] 1.8E-8 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[113-137] . |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[244-332] 3.6E-23 - T[333-391] 2.7E-20 - T[392-518] 1.1E-41 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[246-333] 8.37E-13 - T[320-392] 7.32E-15 - T[390-516] 6.67E-31 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[252-284] 10.626 - T[285-320] 19.176 - T[321-343] 10.985 - T[344-379] 16.391 - T[380-402] 10.152 - T[403-440] 13.265 - T[441-481] 13.472 - T[482-517] 14.78 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[285-320] 5.6E-11 - T[345-379] 1.1E-11 - T[380-402] 0.019 - T[403-440] 1.4E-9 - T[442-481] 2.1E-6 - T[483-516] 1.2E-10 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[518-727] 4.11E-95 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[521-735] 96.666 |
| Pfam |
Thrombospondin_C (IPR008859) - T[535-727] 1.6E-93 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP4_HUMAN | 57.806 % | 776 | 0 |
| TSP3_HUMAN | 59.459 % | 790 | 0 |
| COMP_HUMAN | 55.65 % | 740 | 0 |