- Transcript 'KH2012:KH.L8.11.v1.A...' >
- Transcript 'KH2012:KH.C3.316.v3....'
Transcript Model
Transcript Id
KH2012:KH.C3.316.v3.C.nonSL4-1
Possible name(s)
COMP; THBS3; THBS4
Gene model
Location
KhC3 [6,601,571 / 6,616,283]
Amino acid sequence
Length: 1,347
>KH.C3.316.v3.C.nonSL4-1
TEMTAVRYLVAILSFSVCCSSAGSERISKEIDLMKVSRARHFRKNSDDLNLALTESGSVS
VLTNLRIPPKEASLVIEVLAGSDDQFIKYLELNVDGHKGKVSIKYKSHDDRENVVTFRNV
WISDNQFHTLVFHFVQVEGQRWEVTLLVDCMEFGNHDITPWLSTTLPSHVNSTTKSVVKM
SRRYRGSVKSFMQRALLISDLDLSFVRRNYIGVCSQSDGPEPADPNILINNFQPVSELIV
QLSDLTSVLQDIHHEMKEQILEARALRTTIQQCTLCKSSDDIIEVEPVVNCSSQPCHPGV
ECMDTPDGFQCGECPIGFHGNGSLCEDIDECLNDPCSPLTSCQNTAGSFNCSPCPSGYDE
TMEDVIVGGTIVTRQMCSDYNECKVNNGGCVKYSVCHNLPGASRCGRCIEGFTGNQTIGC
TKIRHCSDGGVNPCDINADCTIINKREKYGCECRVGYAGNGFVCGNDTDHDGFPDIRMPC
HHKHCRQDNCPDVPNSGQEDSDNDGVGDACDDDADNDGIPNTEDNCILVPNSDQQNSDTD
TFGDACDNCPNVKNPKQVDTDGNGEGDECDNDIDGDGISNNADNCPLTPNHDQEDQDMDQ
VGDACDNCLTISNILQTDTDNDLLGDMCDNDADADGDGHQNSVDNCPFVINNAQLDTDND
GIGDACDEDDDNDGVPDYGVTNASDNCRLIYNPNQLDRDGDGIGDACESDKDGDQVSDWK
DACPENAEVTTTDFRTYQSVILDPKGDAQVDPHWVILNKGMEIVQTQNSDPGLAIGYDSF
DGVDFSGTFFVNTATDDDYAGFIFSYQSNSHFYVVTWKQTEQTYWSATPFRAVAQPGLQL
KAVNSNKGPGERMRNALWHSGDTKDEVKVLWSDPMNQGWEDKTSYRWELQHRPQVGYIRI
RFFRKSNMIADTGPVLDDTVKGGRLGVFCFSQENVIWSNLVGHKLYRRTKDNSLVSFVGE
CQESNCYLDGMTSPATNQASLIPVSINSFAYWQKLVRSGSGKIELPVDAFVCGTITTTVT
SSTSISPKHEKLPAYLLLLPVNVIITVTSEELNDVQDYLIQNFPIERNYEIQGFPAPGFY
VLTIDDPKCIRWATAFKPEVRHIQLPAKRGPLAWNINDDLCCTSCRTEGPIRFECSRCYD
VINVPTSLNTSPLSSPRRRSSSLRSLDQSCACSCHHSDVTVIEGALMTSVYFRFDWTFMR
MRRFLSLVVKKEEQILLKDFNFRFNAAKRLLRHTPSSNDNASLIVAQQLGDSDVRHNWTT
IISADIITRDNCDGMKTLCYVMSPASLTSCCHATIQRIFYDVAASMTKQTNYSRIEVEVS
NRIKKLKLPESLKFFLMSQATYPSIVR
Nucleotide sequence
Length: 4,554
>KH2012:KH.C3.316.v3.C.nonSL4-1
AACTTTGTGTGGTTGAGTGAAGCACATAAACTGAGATGACTGCTGTTAGATATTTAGTGG
CGATCTTGTCGTTTTCGGTATGCTGTAGTTCTGCGGGTAGTGAACGTATATCTAAAGAGA
TCGATTTAATGAAGGTATCCCGAGCACGTCACTTCCGTAAGAACTCTGACGATTTAAACC
TCGCGCTTACGGAATCGGGCAGTGTTTCCGTATTAACAAATCTAAGAATTCCACCGAAAG
AGGCATCACTGGTCATAGAGGTCCTAGCTGGCAGTGATGACCAGTTTATAAAATATTTGG
AACTCAACGTGGACGGCCACAAGGGAAAAGTTTCAATCAAATACAAATCCCATGATGATC
GTGAAAACGTGGTAACCTTCCGTAATGTGTGGATATCCGACAACCAGTTTCATACCTTGG
TATTTCACTTCGTTCAAGTGGAAGGTCAGAGATGGGAAGTAACTTTATTAGTCGATTGCA
TGGAGTTCGGCAACCATGATATTACCCCATGGTTGTCTACTACACTACCATCACATGTCA
ACTCAACCACTAAATCTGTCGTTAAAATGAGTCGGAGATACAGAGGGAGTGTGAAGTCAT
TCATGCAGCGTGCTCTCCTTATATCTGATCTAGACCTTTCATTTGTCCGTCGTAATTATA
TCGGTGTGTGCTCACAATCTGATGGTCCTGAGCCTGCTGATCCAAATATTCTTATCAACA
ATTTCCAACCTGTATCTGAACTCATTGTCCAATTATCAGATTTGACTTCAGTATTACAAG
ACATCCATCATGAAATGAAGGAACAAATATTGGAAGCAAGAGCTTTAAGAACAACAATAC
AGCAATGCACATTGTGCAAATCAAGTGATGACATCATAGAAGTTGAGCCAGTTGTGAATT
GTTCCAGCCAACCTTGTCATCCAGGTGTTGAATGTATGGACACCCCTGATGGGTTTCAAT
GTGGAGAATGCCCTATAGGGTTCCATGGTAACGGAAGTTTATGCGAGGACATTGATGAGT
GCTTGAACGACCCCTGTTCACCTTTGACCTCGTGTCAAAATACGGCCGGGAGTTTTAATT
GTTCCCCATGTCCGAGTGGGTATGATGAAACAATGGAAGATGTCATCGTGGGCGGGACCA
TTGTTACAAGACAGATGTGTAGCGATTACAACGAGTGTAAAGTTAACAACGGAGGTTGCG
TCAAATATTCTGTTTGTCATAATTTACCTGGAGCATCAAGATGCGGAAGATGCATCGAAG
GTTTTACGGGAAACCAAACAATCGGTTGTACGAAGATACGCCATTGTAGTGATGGAGGTG
TGAACCCGTGCGATATAAACGCTGATTGCACTATAATAAACAAAAGGGAAAAGTACGGGT
GTGAGTGTAGAGTAGGATACGCTGGTAATGGATTCGTTTGCGGCAATGATACTGACCACG
ATGGATTCCCTGATATTCGAATGCCTTGTCATCATAAACACTGTAGACAAGATAATTGCC
CAGATGTCCCCAACAGTGGTCAGGAGGATTCTGACAACGATGGTGTTGGAGACGCTTGTG
ATGATGATGCAGATAACGATGGGATTCCAAATACCGAAGATAATTGTATCCTTGTACCTA
ACTCTGACCAACAGAACTCTGACACCGACACCTTTGGCGACGCTTGTGATAATTGTCCGA
ATGTAAAGAATCCAAAACAAGTGGACACCGATGGTAACGGAGAGGGAGATGAATGCGATA
ATGACATCGATGGAGATGGTATATCAAACAATGCCGACAATTGCCCCTTAACCCCAAACC
ACGACCAGGAAGACCAAGACATGGACCAAGTTGGAGATGCTTGTGACAACTGTTTGACCA
TCAGTAATATCCTACAAACAGACACCGACAATGACTTGCTTGGTGATATGTGCGATAATG
ATGCAGACGCTGATGGTGACGGACATCAGAACAGTGTTGATAATTGTCCGTTTGTTATCA
ACAACGCACAACTTGATACGGACAACGACGGAATCGGCGATGCATGCGATGAGGATGACG
ACAACGACGGAGTCCCCGATTATGGTGTAACAAACGCATCTGATAATTGTCGATTAATTT
ACAACCCTAACCAACTCGACCGTGACGGGGACGGGATCGGTGATGCGTGTGAAAGCGACA
AAGATGGCGACCAAGTTAGTGATTGGAAAGATGCTTGCCCTGAGAATGCTGAAGTTACAA
CAACTGACTTCCGAACATACCAGAGTGTCATCCTGGATCCAAAGGGAGACGCACAGGTGG
ATCCTCACTGGGTGATACTTAACAAAGGAATGGAGATTGTCCAAACACAGAATAGCGATC
CTGGACTTGCTATTGGGTACGATTCATTTGATGGGGTTGACTTCAGCGGAACTTTCTTCG
TAAACACGGCAACTGATGACGATTATGCTGGTTTTATATTCAGCTACCAAAGTAACTCAC
ATTTCTATGTTGTTACTTGGAAACAAACGGAGCAAACTTATTGGAGCGCGACACCGTTCC
GCGCCGTTGCACAACCAGGGTTGCAACTTAAGGCAGTGAATTCAAACAAGGGACCAGGTG
AACGGATGAGGAACGCGTTGTGGCATTCAGGGGATACGAAGGACGAAGTTAAAGTTCTAT
GGAGTGATCCCATGAACCAGGGATGGGAGGATAAGACTTCTTATAGATGGGAGTTACAAC
ATAGACCACAAGTTGGATACATTAGGATCCGTTTCTTCCGCAAATCGAACATGATAGCGG
ACACAGGTCCTGTGTTAGATGACACAGTTAAAGGGGGAAGACTTGGCGTGTTTTGTTTCA
GTCAAGAAAACGTCATCTGGTCGAACCTGGTCGGTCACAAGTTATATAGGAGAACAAAAG
ACAATAGTTTGGTTTCGTTCGTTGGAGAATGCCAGGAAAGCAATTGTTATTTGGACGGTA
TGACGTCACCAGCGACAAATCAAGCTTCGTTGATTCCAGTTTCGATAAATTCATTTGCAT
ATTGGCAAAAACTCGTTCGATCCGGTTCGGGTAAAATAGAGCTACCCGTCGATGCCTTTG
TTTGCGGAACAATCACGACCACTGTGACGTCATCAACATCGATTTCACCAAAACACGAGA
AACTTCCCGCTTATCTTTTGCTACTGCCAGTAAACGTTATTATCACTGTGACGTCAGAGG
AATTAAATGACGTACAAGATTACCTCATCCAGAATTTTCCGATTGAACGAAACTACGAGA
TTCAGGGATTTCCAGCTCCCGGATTTTACGTATTAACCATCGACGACCCAAAATGCATTC
GGTGGGCGACCGCGTTCAAACCGGAAGTACGTCATATTCAACTTCCGGCAAAGCGCGGTC
CGCTCGCGTGGAATATCAACGACGACTTGTGCTGCACATCGTGTCGAACTGAAGGGCCAA
TCAGATTCGAGTGTTCTCGGTGCTATGACGTCATCAACGTACCTACGTCACTCAATACGT
CACCGCTTTCGTCACCAAGGCGTAGATCGAGTTCGTTACGAAGTTTGGACCAGAGCTGCG
CGTGCTCGTGTCACCATAGTGACGTCACAGTTATTGAAGGTGCATTAATGACGTCAGTCT
ACTTTCGCTTCGATTGGACTTTTATGCGCATGCGCAGATTCCTTAGCTTGGTCGTCAAGA
AAGAAGAACAAATTCTTTTGAAAGATTTTAACTTTCGATTTAACGCCGCAAAGCGATTGT
TACGTCATACACCGTCATCAAACGATAACGCGAGTTTGATTGTTGCGCAACAATTGGGTG
ATTCTGATGTACGTCACAATTGGACGACAATCATTTCAGCGGATATTATAACAAGAGACA
ATTGTGACGGAATGAAAACACTTTGTTACGTTATGTCTCCTGCTTCTCTGACGTCATGTT
GCCACGCAACCATTCAACGGATATTCTATGACGTCGCTGCCTCTATGACGAAACAAACAA
ATTATTCTCGAATAGAAGTCGAAGTCAGTAATCGAATAAAGAAACTTAAACTTCCGGAAT
CATTGAAGTTCTTTCTGATGTCACAAGCGACTTATCCTTCCATTGTTCGTTAACAATTAA
TTTTACTTTAAATAAATAACGTTGTTATGTTTGTGTGATTACGTGCCCATTTAAACATTG
ATTACACCAATCGTTGTGTCTCTTGGGACCTTCTGGGTGTCGCTTCCATCGCGGGATTAC
CTCAAAAGACAACTATGGGGGTTGTGTGACGCACAATGATGATGGTTACGTCATAAACAT
ATCGGGCTCCCGAATCAGGGAGACACGCCGGTTGGATTGAGATGCTCTTCGTGGTATCAC
CGTATTTGGTGATGACCCGCCGGCTTATTCCAGTGGGTATTGAATTGCAAAGAAGGCCGT
TCATACGAACCGGGCCAGACGCCTAAAGTCATTGCAATGCATTAGTTAGGCCTGATAAAG
GGTTCGTTTATCACCAAAGAGATGTATTTTTAAATTTATTTTCCCACCCCTGCGGGTAAA
AATAATACACCGTTGTTATGTATTCGTGGGTTATAATAAATGTTCCTGTTTTCA
| PANTHER |
Thrombospondin (IPR037349) - T[11-941] 0.0 |
| SMART |
Laminin_G (IPR001791) - T[24-201] 9.1E-4 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[39-167] 9.5E-8 - T[732-941] 9.23E-96 |
| Pfam |
Thbs/COMP_coiled-coil (IPR024665) - T[236-277] 3.1E-16 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[287-326] 10.195 - T[422-463] 8.83 |
| SMART |
EGF-like_dom (IPR000742) - T[290-326] 9.9E-4 - T[330-378] 13.0 - T[382-421] 42.0 - T[425-465] 1.4 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[291-326] 0.014 - T[327-378] 9.7E-7 - T[379-421] 0.026 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[327-351] . |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[327-359] 2.2E-8 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[460-547] 8.11E-13 - T[536-606] 6.67E-15 - T[604-730] 9.29E-31 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[466-498] 10.626 - T[499-534] 19.176 - T[535-557] 10.985 - T[558-593] 16.391 - T[594-616] 10.152 - T[617-654] 13.265 - T[655-695] 13.472 - T[696-731] 14.78 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[499-534] 6.8E-11 - T[559-593] 1.4E-11 - T[594-616] 0.023 - T[617-654] 1.8E-9 - T[656-695] 2.2E-6 - T[697-730] 1.5E-10 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[538-605] 1.3E-21 - T[606-732] 1.7E-41 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[735-949] 96.666 |
| Pfam |
Thrombospondin_C (IPR008859) - T[749-941] 2.1E-93 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP4_HUMAN | 48.401 % | 816 | 0 |
| TSP3_HUMAN | 50.378 % | 856 | 0 |
| COMP_HUMAN | 55.415 % | 745 | 0 |