Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C3.359.v1.C.SL1-2

Possible name(s)

BROX; PDCD6IP; PTPN23

Gene model

KH2012:KH.C3.359

Location

KhC3 [1,805,491 / 1,813,608]

Sequences

Amino acid sequence

Length: 464

>KH.C3.359.v1.C.SL1-2
SFTLSQVNLNMAHWFHRNPFKATAAQSFDVRKISMKSDFNKVMGDLRNARNALLSLFNDP
LASPDKMESVSSDYFSLIQGLFEVPAPTTDDASTSQTETTTEIEDSKTEKEKDNKKDKSK
TEDERPVGMAITLKTFFKFKWTQTLYVGKPPLVEDDAEFDFVNMGINVALWYTKHAAKLA
AQPELKMEDAKEIHSCLKKAAGMFKEFKDNQAGKLKNPPQKCSDLDPNVLECYIMCCQAE
AQEVTIARAVEKKHKDSLIAALANETSKYFQQADHMLNSKDQIIVGKWRKYLQLKEKFYK
SYALCYYGSGLLSDEKCGDSVRCLMDSNQAFEETDKLCKEYITTKGAGSTIRPHEHAFYR
NFQKDLQRKLKKSESENGFIYHHKIPPVAPNMSLQATHGLVEPTPYTVPFLSSSWTKAVY
AGFSISKNVAQNKKSKVKTEKEGEIQNIKEPDIKVTKDNGCIVS

Nucleotide sequence

Length: 1,860

>KH2012:KH.C3.359.v1.C.SL1-2
CTAATATAGCTACTTCATTGATCATTTACATTAAGCCAAGTGAATTTAAACATGGCCCAC
TGGTTCCACCGTAACCCATTCAAAGCAACAGCTGCTCAATCTTTTGATGTTAGAAAAATT
TCAATGAAGTCCGATTTCAACAAAGTGATGGGAGACCTTAGAAATGCAAGGAATGCCTTA
TTGTCTTTGTTCAACGATCCATTAGCATCTCCTGATAAAATGGAGTCAGTCAGCAGTGAT
TACTTCTCCTTAATTCAAGGTTTATTTGAAGTTCCTGCTCCAACTACAGATGATGCCAGC
ACTTCTCAGACAGAGACCACAACTGAAATAGAGGATTCAAAAACTGAAAAAGAAAAAGAC
AATAAAAAAGATAAAAGTAAGACTGAAGATGAAAGACCTGTCGGCATGGCAATAACTCTA
AAAACCTTCTTTAAGTTTAAGTGGACGCAGACATTATATGTTGGCAAACCTCCATTGGTT
GAAGATGATGCAGAGTTTGATTTCGTCAACATGGGGATTAACGTTGCACTTTGGTACACC
AAACATGCTGCTAAACTTGCTGCTCAACCAGAATTAAAAATGGAAGATGCAAAAGAAATA
CACAGCTGCTTGAAGAAAGCTGCTGGTATGTTCAAAGAGTTCAAGGATAATCAAGCTGGA
AAACTAAAGAATCCACCTCAGAAATGTTCCGATTTAGATCCAAATGTGTTGGAATGTTAT
ATCATGTGTTGTCAGGCAGAAGCTCAAGAAGTGACAATTGCAAGAGCGGTGGAGAAGAAG
CATAAAGATTCCCTGATTGCTGCACTTGCAAATGAAACTTCAAAATATTTCCAACAAGCT
GACCATATGCTCAACTCAAAAGACCAAATCATTGTTGGAAAATGGAGAAAATATCTTCAA
CTGAAAGAAAAGTTTTATAAATCATATGCGTTATGTTATTATGGTAGTGGATTGCTAAGT
GATGAGAAATGTGGAGATTCAGTTCGTTGTTTAATGGACAGTAATCAAGCTTTTGAAGAA
ACAGACAAACTATGCAAGGAATACATCACAACCAAAGGAGCAGGATCAACCATAAGACCT
CACGAACATGCGTTTTACAGAAATTTTCAAAAAGATTTACAAAGAAAGTTAAAGAAAAGT
GAATCAGAGAATGGATTTATATACCATCACAAAATCCCTCCTGTTGCCCCCAATATGTCC
TTACAAGCCACCCATGGATTAGTTGAACCAACTCCATACACTGTACCATTTCTAAGTTCA
AGTTGGACTAAAGCAGTTTATGCCGGTTTCAGCATCAGTAAGAACGTTGCTCAAAATAAA
AAGTCCAAAGTAAAAACAGAAAAAGAAGGCGAAATCCAAAATATAAAAGAACCTGACATT
AAAGTAACAAAGGACAATGGATGTATTGTTTCGTGATTATTTCTATTACATATAATTAAT
CACGATGTATGCAGTTCATTCAAATAACGAAGCAATATAATCGTGTATGGAATACGCGCG
TGTAAAGTATTTTGCACTTGCTAGTCGTCACGTCAATACCCTCTGTTATTAACGTATTGT
GAGTCGTGCGTACATTGCGTTATTACGTATACACACGTAACGTGTATCACGATAATTTAT
TCACAGTTGGGGATATTTTATTGATTAAAACTGCTATTATTTCTTTCCTTGTGTGATATG
TAAAAGCGTAAGTGATGTACCATTATTTTATTTACTTGTGTATATTTTGAACAGTTTTAT
CAATTGTTTATTATCCTTCTTACTGTAAATATGGTACCGTGGGCATTTGAATTACTGCAG
TATAATATTAAATCAGCCCTAGCTTGCGTTGTGTTGTATTAAAATTTAATTAAACCCGCG

InterProScan

Gene3D	BRO1_sf (IPR038499) - T[10-424] 4.5E-106
SMART	BRO1_dom (IPR004328) - T[55-441] 1.5E-78
Pfam	BRO1_dom (IPR004328) - T[137-406] 1.9E-36
ProSiteProfiles	BRO1_dom (IPR004328) - T[167-406] 17.12

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
BROX_HUMAN	41.85 %	368	1.38E-124