- Transcript 'KH2012:KH.C3.374.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.374.v1.A.SL3-1
Possible name(s)
RPAP3; SPAG1; TOMM34
Gene model
Location
KhC3 [3,647,577 / 3,653,998]
Amino acid sequence
Length: 1,023
>KH.C3.374.v1.A.SL3-1
NTGAMAATLFNGTSNSSNDITIDMLDYQYIDNCSNIKELEKILRALRSGKDGYYPHLISH
CEDKVRGMNPTSKALRKLNPITRTKDLPADEAEVITNGIGEWKNEIHSNASDDQVNGCNI
PPVRQTTTLKGTKSTVTNPSSKSQRIRSYDYKAWDKFDADKECENAEKQPQEKPRTTPTS
KMSDKVDATGLSEYEMLVRATSEKDKGNEAFKSADFEAALTYYSRSISLSRTAASINNRA
LAYIRLQRWKEAESDCNEVLQLEPDNLKARLRRATARKELLKYIEAKNDLSFVLDKEPHN
TRASKILEEVEQNLSKSSSGDASQSSRTGRKMMIAEVSSDEEETDPPTANHCEIKEKDVP
DTVQSEVAPISATVNGDDTEKVSKDDKVGPGDVETTFAAEEPHVEQPPPEMPQSVLKIKN
SGKELFLSGQYADAAQLYTKALNTLQACADKSPDLDHSCNIALLYNNRAACHLKVGDDKA
CIADCNEVLILKGMDTKALIRRAYAFEHMEKYQQAYLDFRSAQTVDWSIKQAQDGANRVA
SHLRDIHGPKWKSVPQKSKAVPKQKAAGKAAGAKEKSSNPTEADREKKKEEIRRNLFDSL
KNNGNTEVKKGNFEKAVECYTKSMNICPDEIASYTNRALCYLKLNKPVSAIEDCTEAIKR
DPKNIKAMFRRAQANKNLKKYKQALDDLNKVLQLEPENKSAHAELMVVRKLMNNINNEDF
IIKPSSTTKSPMKSKDAAKKEKKRKIIIEDADSDEEAVNISENNGKEDTVKTTPIKPDIV
TNGVASKEEVQSKLENIKPTVELEEIMKQQVQTTEVIEKKTEQTEPNLKLKEPEEIKPTL
DNPIVTSTKDGVILPQEIKSPVQPNEDTKPSIQPQDPLTPTNTSTNHIYMNNTAPFVSPY
EFGNAWNAVQPKHAVSTYKMILDRVPVKNIPELVTNKTTDHMIVTFAKIARYHLIAGVKE
EVDRAYGILSSLSLAQRFNMAAMFLSKPDKKHVSAAIDDLEAALDTGSFTKADVENLRVT
YML
Nucleotide sequence
Length: 3,519
>KH2012:KH.C3.374.v1.A.SL3-1
GTTAAGTATTAAGTGCAATAGAATTCGGTTGGTGTGACCGCTTTTACGATCTGTATTCTG
TATTATTGTTGAACGTAAAATACTGGTGCGATGGCTGCAACGCTTTTCAATGGAACCTCA
AACAGCTCCAACGATATAACTATTGACATGTTGGACTATCAGTACATTGACAATTGCTCC
AACATTAAGGAGCTTGAAAAAATACTAAGGGCTCTCAGATCTGGTAAAGATGGTTATTAC
CCCCATCTCATATCACACTGTGAAGATAAAGTTAGAGGAATGAATCCTACAAGCAAAGCT
CTGCGAAAACTAAACCCGATCACCAGAACAAAGGACTTGCCAGCTGATGAGGCTGAGGTT
ATAACAAACGGAATTGGAGAATGGAAAAATGAAATTCATTCAAATGCATCTGATGATCAG
GTTAATGGTTGCAACATTCCACCAGTCAGACAAACAACTACTTTGAAAGGGACTAAATCA
ACAGTTACCAATCCAAGTTCAAAAAGCCAAAGAATAAGGAGCTACGATTACAAGGCGTGG
GATAAGTTTGATGCAGATAAGGAATGTGAAAATGCAGAGAAGCAACCACAAGAGAAGCCA
AGAACAACCCCAACCTCAAAAATGTCTGATAAAGTTGATGCCACTGGATTATCAGAATAT
GAAATGCTAGTTCGAGCAACTTCAGAAAAAGACAAAGGCAACGAAGCTTTTAAATCAGCT
GATTTTGAGGCAGCTCTCACTTATTATTCACGGAGCATTAGTCTGTCACGGACAGCTGCG
TCCATCAACAACAGAGCTCTGGCTTACATCAGACTGCAAAGGTGGAAGGAGGCTGAGTCA
GACTGTAATGAAGTTTTACAGCTTGAGCCTGATAACTTGAAAGCAAGACTGAGGCGAGCC
ACTGCTCGAAAGGAACTGTTAAAATATATTGAAGCAAAGAACGATCTCAGCTTTGTATTG
GATAAGGAGCCTCACAATACAAGGGCATCGAAAATCTTAGAAGAAGTTGAGCAAAATCTT
TCAAAGAGTTCTTCTGGTGATGCGAGCCAGAGTTCGAGGACTGGAAGAAAGATGATGATC
GCTGAGGTTTCATCTGATGAGGAAGAAACTGATCCTCCAACCGCAAATCACTGTGAGATA
AAGGAAAAAGACGTACCAGATACTGTACAGAGTGAAGTTGCACCTATATCTGCAACTGTC
AATGGAGACGATACAGAAAAAGTTTCCAAGGATGACAAAGTAGGTCCAGGTGATGTTGAA
ACTACATTTGCTGCAGAGGAGCCACATGTGGAACAGCCACCACCTGAAATGCCACAATCT
GTGCTTAAAATTAAAAATTCTGGCAAAGAGTTATTTTTGAGTGGTCAATACGCTGATGCT
GCACAGTTGTATACAAAAGCACTTAATACACTTCAGGCTTGTGCGGATAAGTCTCCGGAT
TTGGATCATAGCTGCAATATTGCACTTCTTTATAATAACAGAGCTGCGTGTCATTTAAAA
GTAGGTGATGACAAGGCATGTATTGCTGATTGCAATGAGGTGCTTATACTGAAAGGAATG
GACACAAAGGCCTTAATTCGTCGTGCTTACGCATTTGAGCATATGGAGAAGTACCAGCAA
GCATATTTGGATTTCAGGTCAGCTCAAACTGTAGATTGGTCCATCAAACAGGCACAAGAT
GGTGCTAACAGAGTTGCAAGCCATCTGAGAGATATACATGGCCCAAAGTGGAAATCTGTA
CCGCAAAAATCAAAGGCAGTTCCAAAACAGAAGGCAGCTGGTAAGGCTGCAGGTGCCAAG
GAGAAAAGTTCAAATCCAACAGAAGCAGATCGTGAAAAAAAGAAAGAAGAAATTCGTCGA
AATCTCTTTGATTCATTGAAGAATAATGGAAACACAGAAGTAAAGAAAGGAAACTTTGAA
AAAGCTGTTGAATGCTACACTAAATCTATGAATATATGCCCTGATGAGATAGCCAGTTAT
ACCAATCGTGCACTGTGTTACTTGAAACTTAACAAGCCAGTTTCTGCCATTGAAGATTGT
ACAGAAGCCATAAAACGCGATCCTAAAAATATCAAAGCAATGTTCCGCAGAGCACAAGCA
AATAAGAACCTTAAGAAGTACAAGCAAGCTCTTGATGATCTAAATAAAGTGTTGCAACTG
GAGCCTGAGAATAAGTCCGCCCACGCTGAGCTGATGGTGGTCAGGAAATTAATGAACAAC
ATAAATAATGAAGATTTTATCATCAAGCCATCTTCGACAACAAAAAGTCCAATGAAGAGT
AAAGATGCTGCGAAGAAGGAAAAGAAGAGAAAGATCATCATAGAAGATGCAGATAGCGAT
GAGGAGGCTGTGAACATTAGTGAAAACAATGGTAAAGAGGATACAGTTAAAACAACTCCA
ATAAAACCTGATATCGTCACAAATGGTGTTGCAAGCAAGGAGGAAGTTCAATCAAAACTT
GAGAATATCAAACCTACTGTTGAACTCGAGGAAATAATGAAACAGCAAGTCCAAACAACT
GAAGTTATTGAGAAAAAAACAGAACAAACTGAACCGAACTTAAAGCTCAAAGAGCCCGAA
GAAATAAAACCAACTTTGGATAATCCTATAGTTACATCCACTAAAGATGGTGTTATATTA
CCTCAAGAAATAAAGTCACCGGTACAGCCAAATGAAGATACCAAACCATCCATTCAGCCC
CAGGACCCCTTGACACCCACTAATACATCAACCAACCATATTTACATGAACAATACAGCA
CCTTTTGTTTCTCCATATGAGTTTGGAAATGCATGGAACGCAGTGCAACCCAAACATGCT
GTCAGCACATATAAGATGATACTTGACCGAGTGCCAGTTAAAAATATTCCAGAGCTGGTC
ACCAACAAGACTACAGATCATATGATTGTCACATTTGCAAAGATAGCACGCTATCATCTC
ATTGCTGGGGTGAAAGAGGAAGTAGACAGAGCTTATGGCATCCTCAGTTCTTTATCTTTG
GCTCAACGTTTCAATATGGCGGCCATGTTTCTTTCTAAACCTGACAAGAAGCATGTGTCT
GCTGCAATCGATGACTTAGAAGCTGCGTTGGACACTGGCTCCTTTACAAAAGCAGATGTC
GAAAATTTAAGAGTTACATACATGCTTTAGTAGATACTAAATTCTTCAAAAATGAATTAC
CACTTAATTGATCCGTCATAAGCGATACATAAGATCCGCTCTTGTTCTGGACTATGGTCA
AGTGAAAACTTTTCATATTTAACATAATAAATTTGTATGGAATATCTTATTACAAAAGTA
TCCATTTATTTCTTTTTGTTGCTGTGTATCTTTTTAGTATGTTATTTTTATGTTTTACTA
TATTTTTATTTAACTTCAATCTGATTGGTTCCCTTGCTGGTATGCAACAATTATTCTTCT
AAACTGTTTCGGTATGATATGTGTGAAACTACTCCTTGCTTTATTTAAGTTGTAAATAAA
TGTTTGCAGCTTTGTTATCTATGACACAGCAGTTTTTAA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[192-348] 4.9E-33 - T[403-543] 9.8E-28 - T[582-747] 2.1E-40 |
| SMART |
TPR_repeat (IPR019734) - T[200-233] 15.0 - T[234-266] 0.11 - T[267-300] 94.0 - T[415-448] 77.0 - T[462-495] 0.29 - T[496-529] 11.0 - T[597-630] 0.0022 - T[631-664] 1.6E-6 - T[665-698] 4.0E-5 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[203-315] 1.94E-21 - T[410-544] 9.16E-22 - T[592-716] 2.66E-33 |
| ProSiteProfiles |
TPR_repeat (IPR019734) - T[233-266] 8.614 - T[496-529] 5.723 - T[597-630] 9.676 - T[631-664] 8.142 - T[665-698] 10.207 |
| ProSiteProfiles |
TPR-contain_dom (IPR013026) - T[233-300] 12.764 - T[462-529] 7.239 - T[597-698] 25.328 |
| Pfam |
TPR_repeat (IPR019734) - T[606-629] 0.14 - T[666-698] 0.0068 |
| Pfam |
TPR_1 (IPR001440) - T[633-664] 5.3E-8 |
| Pfam |
RPAP3-like_C (IPR025986) - T[898-990] 5.6E-13 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPAP3_HUMAN | 28.523 % | 101 | 7.26E-22 |
| SPAG1_HUMAN | 35.791 % | 412 | 2.58E-128 |
| TOM34_HUMAN | 40 % | 216 | 4.18E-63 |