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- Transcript 'KH2012:KH.C3.374.v2....'
Transcript Model
Transcript Id
KH2012:KH.C3.374.v2.C.SL1-1
Possible name(s)
RPAP3; SPAG1; TOMM34
Gene model
Location
KhC3 [3,650,850 / 3,653,998]
Amino acid sequence
Length: 765
>KH.C3.374.v2.C.SL1-1
VLQLEPDNLKARLRRATARKELLKYIEAKNDLSFVLDKEPHNTRASKILEEVEQNLSKSS
SGDASQSSRTGRKMMIAEVSSDEEETDPPTANHCEIKEKDVPDTVQSEVAPISATVNGDD
TEKVSKDDKVGPGDVETTFAAEEPHVEQPPPEMPQSVLKIKNSGKELFLSGQYADAAQLY
TKALNTLQACADKSPDLDHSCNIALLYNNRAACHLKVGDDKACIADCNEVLILKGMDTKA
LIRRAYAFEHMEKYQQAYLDFRSAQTVDWSIKQAQDGANRVASHLRDIHGPKWKSVPQKS
KAVPKQKAAGKAAGAKEKSSNPTEADREKKKEEIRRNLFDSLKNNGNTEVKKGNFEKAVE
CYTKSMNICPDEIASYTNRALCYLKLNKPVSAIEDCTEAIKRDPKNIKAMFRRAQANKNL
KKYKQALDDLNKVLQLEPENKSAHAELMVVRKLMNNINNEDFIIKPSSTTKSPMKSKDAA
KKEKKRKIIIEDADSDEEAVNISENNGKEDTVKTTPIKPDIVTNGVASKEEVQSKLENIK
PTVELEEIMKQQVQTTEVIEKKTEQTEPNLKLKEPEEIKPTLDNPIVTSTKDGVILPQEI
KSPVQPNEDTKPSIQPQDPLTPTNTSTNHIYMNNTAPFVSPYEFGNAWNAVQPKHAVSTY
KMILDRVPVKNIPELVTNKTTDHMIVTFAKIARYHLIAGVKEEVDRAYGILSSLSLAQRF
NMAAMFLSKPDKKHVSAAIDDLEAALDTGSFTKADVENLRVTYML
Nucleotide sequence
Length: 2,667
>KH2012:KH.C3.374.v2.C.SL1-1
GTTTTACAGCTTGAGCCTGATAACTTGAAAGCAAGACTGAGGCGAGCCACTGCTCGAAAG
GAACTGTTAAAATATATTGAAGCAAAGAACGATCTCAGCTTTGTATTGGATAAGGAGCCT
CACAATACAAGGGCATCGAAAATCTTAGAAGAAGTTGAGCAAAATCTTTCAAAGAGTTCT
TCTGGTGATGCGAGCCAGAGTTCGAGGACTGGAAGAAAGATGATGATCGCTGAGGTTTCA
TCTGATGAGGAAGAAACTGATCCTCCAACCGCAAATCACTGTGAGATAAAGGAAAAAGAC
GTACCAGATACTGTACAGAGTGAAGTTGCACCTATATCTGCAACTGTCAATGGAGACGAT
ACAGAAAAAGTTTCCAAGGATGACAAAGTAGGTCCAGGTGATGTTGAAACTACATTTGCT
GCAGAGGAGCCACATGTGGAACAGCCACCACCTGAAATGCCACAATCTGTGCTTAAAATT
AAAAATTCTGGCAAAGAGTTATTTTTGAGTGGTCAATACGCTGATGCTGCACAGTTGTAT
ACAAAAGCACTTAATACACTTCAGGCTTGTGCGGATAAGTCTCCGGATTTGGATCATAGC
TGCAATATTGCACTTCTTTATAATAACAGAGCTGCGTGTCATTTAAAAGTAGGTGATGAC
AAGGCATGTATTGCTGATTGCAATGAGGTGCTTATACTGAAAGGAATGGACACAAAGGCC
TTAATTCGTCGTGCTTACGCATTTGAGCATATGGAGAAGTACCAGCAAGCATATTTGGAT
TTCAGGTCAGCTCAAACTGTAGATTGGTCCATCAAACAGGCACAAGATGGTGCTAACAGA
GTTGCAAGCCATCTGAGAGATATACATGGCCCAAAGTGGAAATCTGTACCGCAAAAATCA
AAGGCAGTTCCAAAACAGAAGGCAGCTGGTAAGGCTGCAGGTGCCAAGGAGAAAAGTTCA
AATCCAACAGAAGCAGATCGTGAAAAAAAGAAAGAAGAAATTCGTCGAAATCTCTTTGAT
TCATTGAAGAATAATGGAAACACAGAAGTAAAGAAAGGAAACTTTGAAAAAGCTGTTGAA
TGCTACACTAAATCTATGAATATATGCCCTGATGAGATAGCCAGTTATACCAATCGTGCA
CTGTGTTACTTGAAACTTAACAAGCCAGTTTCTGCCATTGAAGATTGTACAGAAGCCATA
AAACGCGATCCTAAAAATATCAAAGCAATGTTCCGCAGAGCACAAGCAAATAAGAACCTT
AAGAAGTACAAGCAAGCTCTTGATGATCTAAATAAAGTGTTGCAACTGGAGCCTGAGAAT
AAGTCCGCCCACGCTGAGCTGATGGTGGTCAGGAAATTAATGAACAACATAAATAATGAA
GATTTTATCATCAAGCCATCTTCGACAACAAAAAGTCCAATGAAGAGTAAAGATGCTGCG
AAGAAGGAAAAGAAGAGAAAGATCATCATAGAAGATGCAGATAGCGATGAGGAGGCTGTG
AACATTAGTGAAAACAATGGTAAAGAGGATACAGTTAAAACAACTCCAATAAAACCTGAT
ATCGTCACAAATGGTGTTGCAAGCAAGGAGGAAGTTCAATCAAAACTTGAGAATATCAAA
CCTACTGTTGAACTCGAGGAAATAATGAAACAGCAAGTCCAAACAACTGAAGTTATTGAG
AAAAAAACAGAACAAACTGAACCGAACTTAAAGCTCAAAGAGCCCGAAGAAATAAAACCA
ACTTTGGATAATCCTATAGTTACATCCACTAAAGATGGTGTTATATTACCTCAAGAAATA
AAGTCACCGGTACAGCCAAATGAAGATACCAAACCATCCATTCAGCCCCAGGACCCCTTG
ACACCCACTAATACATCAACCAACCATATTTACATGAACAATACAGCACCTTTTGTTTCT
CCATATGAGTTTGGAAATGCATGGAACGCAGTGCAACCCAAACATGCTGTCAGCACATAT
AAGATGATACTTGACCGAGTGCCAGTTAAAAATATTCCAGAGCTGGTCACCAACAAGACT
ACAGATCATATGATTGTCACATTTGCAAAGATAGCACGCTATCATCTCATTGCTGGGGTG
AAAGAGGAAGTAGACAGAGCTTATGGCATCCTCAGTTCTTTATCTTTGGCTCAACGTTTC
AATATGGCGGCCATGTTTCTTTCTAAACCTGACAAGAAGCATGTGTCTGCTGCAATCGAT
GACTTAGAAGCTGCGTTGGACACTGGCTCCTTTACAAAAGCAGATGTCGAAAATTTAAGA
GTTACATACATGCTTTAGTAGATACTAAATTCTTCAAAAATGAATTACCACTTAATTGAT
CCGTCATAAGCGATACATAAGATCCGCTCTTGTTCTGGACTATGGTCAAGTGAAAACTTT
TCATATTTAACATAATAAATTTGTATGGAATATCTTATTACAAAAGTATCCATTTATTTC
TTTTTGTTGCTGTGTATCTTTTTAGTATGTTATTTTTATGTTTTACTATATTTTTATTTA
ACTTCAATCTGATTGGTTCCCTTGCTGGTATGCAACAATTATTCTTCTAAACTGTTTCGG
TATGATATGTGTGAAACTACTCCTTGCTTTATTTAAGTTGTAAATAAATGTTTGCAGCTT
TGTTATCTATGACACAGCAGTTTTTAA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[1-84] 1.2E-9 - T[145-285] 6.4E-28 - T[325-489] 1.6E-40 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[1-57] 3.57E-5 - T[152-286] 6.41E-22 - T[334-458] 1.61E-33 |
| ProSiteProfiles |
TPR-contain_dom (IPR013026) - T[1-42] 9.362 - T[204-271] 7.239 - T[339-440] 25.328 |
| SMART |
TPR_repeat (IPR019734) - T[9-42] 94.0 - T[157-190] 77.0 - T[204-237] 0.29 - T[238-271] 11.0 - T[339-372] 0.0022 - T[373-406] 1.6E-6 - T[407-440] 4.0E-5 |
| ProSiteProfiles |
TPR_repeat (IPR019734) - T[238-271] 5.723 - T[339-372] 9.676 - T[373-406] 8.142 - T[407-440] 10.207 |
| Pfam |
TPR_repeat (IPR019734) - T[348-371] 0.1 - T[408-440] 0.0048 |
| Pfam |
TPR_1 (IPR001440) - T[375-406] 3.8E-8 |
| Pfam |
RPAP3-like_C (IPR025986) - T[640-732] 3.8E-13 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPAP3_HUMAN | 28.523 % | 101 | 2.99E-22 |
| SPAG1_HUMAN | 34.091 % | 241 | 5.78E-68 |
| TOM34_HUMAN | 40 % | 216 | 2.87E-64 |