- Molecular Tool 'dnRas mRNA' >
- Transcript 'KH2012:KH.C3.411.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.411.v1.A.nonSL2-1
Possible name(s)
BMP4; LEFTY1; LEFTY2
Gene model
Location
KhC3 [6,288,471 / 6,291,539]
Amino acid sequence
Length: 410
>KH.C3.411.v1.A.nonSL2-1
RHIRRSDAKEKYKRRFTENLEHSIIMFPIKTFLLIISIQFSTATQHDDLQDGILTHLGLG
KLPTFTQMDLSQVVVPDHIRARYEQLVAARESRLGRNRRIRSAGPSLAGLFRNVHQKTGI
EGDVIYSDTFREQLKFDMEGKIPDKTTITMAELRLFKKLPNHSRLGAYTVKHRATSGSRN
DVERPSVRRSPQVIRHARVSIHHSLPLPNGDVITELVDSRLIMVNGSGWQSFDITSAIRK
WQRHPVKFMTITLELKVQSTRPGRVASEVARMIRFTGQKVALDSPRRPELVVFTEEEEKT
RTNDCSASRHRRHRKCCREKRFISFREMEWAKDWIIEPSGYDAYQCAGGCSSSRRKNSKR
SPRSCTVAESSSLPVMYLVKDGDGTKVEVSEFPNMVVEKCACSLDSVFGV
Nucleotide sequence
Length: 1,426
>KH2012:KH.C3.411.v1.A.nonSL2-1
TCATTTTACTCAACAACTCGCAGCGGGTAACCGGAAGTGACAAGAACGAGATCTAGACTT
TTACCTCAAGTTCTCGAACCACAGCGCTGTGTGACGTCATATTAGAAGAAGTGACGCCAA
AGAAAAGTATAAAAGAAGATTCACAGAAAATCTAGAACATTCAATAATAATGTTTCCGAT
CAAGACTTTCTTACTTATAATATCCATTCAATTCTCGACTGCCACCCAACACGACGACTT
ACAAGATGGGATTCTCACCCATCTGGGGCTAGGGAAACTCCCCACTTTCACCCAAATGGA
CCTCAGCCAAGTAGTTGTACCAGACCATATCAGAGCAAGATACGAACAACTTGTAGCAGC
CAGGGAATCGAGATTGGGAAGAAACCGTCGCATCAGATCAGCCGGACCATCGCTTGCTGG
TTTGTTCCGAAACGTTCATCAAAAAACAGGTATCGAAGGTGACGTCATATACTCCGATAC
TTTCCGGGAGCAACTCAAATTTGACATGGAAGGAAAAATACCGGACAAAACGACCATCAC
CATGGCCGAACTCCGACTTTTTAAGAAACTTCCAAATCACAGCAGACTCGGTGCTTATAC
CGTGAAGCATAGGGCGACATCTGGTAGCAGGAATGATGTGGAAAGACCATCCGTTAGAAG
GAGCCCGCAAGTCATCCGACATGCAAGGGTTTCCATCCACCATTCCCTTCCATTACCTAA
TGGTGACGTCATCACAGAACTGGTGGATTCTAGGTTGATTATGGTGAACGGTTCCGGTTG
GCAGAGTTTTGACATCACTTCCGCTATCCGCAAGTGGCAACGACACCCTGTTAAGTTCAT
GACGATAACCTTAGAACTGAAGGTACAAAGTACGAGACCAGGTCGGGTTGCTTCCGAGGT
GGCAAGGATGATACGGTTTACTGGTCAAAAGGTGGCGCTAGACTCACCAAGGCGACCTGA
GCTCGTAGTCTTCACCGAAGAGGAAGAAAAAACAAGGACTAACGATTGTTCTGCGTCACG
TCACAGACGACATCGAAAGTGTTGCCGCGAAAAGCGATTTATCAGTTTCCGGGAAATGGA
ATGGGCGAAAGATTGGATCATAGAACCATCGGGGTACGACGCTTACCAGTGCGCGGGAGG
ATGCAGTTCCAGTCGCCGCAAAAATTCCAAGAGGTCCCCGAGGTCATGCACTGTTGCGGA
ATCGTCTTCGTTGCCGGTTATGTACTTGGTAAAAGACGGTGATGGCACAAAGGTCGAAGT
GTCAGAGTTTCCGAACATGGTAGTAGAAAAATGTGCCTGCTCCCTGGACAGTGTATTTGG
TGTGTAATTTCGTATTTTTTTGCATTTTTTCCTATTCTACTTATGTTCCAATACATTAAT
CCGCTTGTATACTGTTTTTATGAATGAATGAATGTTATTTCATTTA
| PIRSF |
LRDF (IPR003942) - T[23-410] 3.0E-133 |
| PANTHER |
TGF-beta-rel (IPR015615) - T[29-405] 1.7E-132 |
| Pfam |
TGF-b_propeptide (IPR001111) - T[45-259] 8.5E-17 |
| PRINTS |
LRDF (IPR003942) - T[48-69] 1.2E-6 - T[71-87] 1.2E-6 - T[374-393] 1.2E-6 |
| ProSiteProfiles |
TGF-b_C (IPR001839) - T[298-403] 25.757 |
| Gene3D |
Cystine-knot_cytokine (IPR029034) - T[304-403] 2.2E-24 |
| SUPERFAMILY |
Cystine-knot_cytokine (IPR029034) - T[309-402] 2.52E-21 |
| Pfam |
TGF-b_C (IPR001839) - T[315-402] 1.2E-13 |
| SMART |
TGF-b_C (IPR001839) - T[316-403] 1.3E-10 |
| ProSitePatterns |
TGFb_CS (IPR017948) - T[335-350] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LFTY2_HUMAN | 28.643 % | 165 | 2.77E-47 |
| LFTY1_HUMAN | 28.421 % | 164 | 8.58E-47 |
| BMP4_HUMAN | 25.57 % | 90.9 | 5.96E-20 |