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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S1...'
  2. Clone 'cima846l19'
  3. Transcript 'KH2012:KH.C3.5.v1.C....'

Transcript Model

Transcript Id

KH2012:KH.C3.5.v1.C.SL1-1

Possible name(s)

DHCR7; LBR; TM7SF2

Gene model

KH2012:KH.C3.5

Location

KhC3 [3,303,336 / 3,310,300]

Sequences

Amino acid sequence

Length: 609

>KH.C3.5.v1.C.SL1-1
YWNRQYTPTFKMRWSTGDKVMAKWPGSALYFPGIIQDIDEDDDSAEVLFNDGTTMDVPIK
HIKKEEEFKRRARSKSPARSRRRSQSPGRRRTTRATAKKDTEVGKANQRNNTSSSSGEER
KVTAILRSDVEVSQQEHIKTTKTTKSHSKVETNKTVIPDSGYMVTRQQVKEMYMSKAAIL
NAKQAEETPTPVVKDTKQYEYGGVLGVFLMYVTLPLLPLSFLVFCNKEDCSISKAKLSMI
PQTLEAYFDQMSIFIVLEFLVFHAIIYALPLGHIIKGPATPSGKRLDYRINAMYTLVLTL
AAYAVLYHYKVPITSIKMLPLAATATVVSYIGVLLVHLKSKNVPENELNPHGNTGSDLYD
SFLGRELHPRIGSLFDLKLYLYRPGMAAWLVVVMVEMQRHYEQKNMFEPQVLVVGISQIL
YIILEFFWDEEQCPFMFDIKNEGLGFVQFFGELVIVPFIYSQPITYVVNHPLKLQNTQIA
GICLLLFVGICLIVLSGRQKSKFRKNPFDPKLAHLESLPPSKAGGDRLLVSGFWGLVRHP
NYLGEIVVGLAWSLACGFNHLLPWFYPIFVIGLLLHRAIRDDVRCREKHGKMWKVYCERV
KYRVIPYVF

Nucleotide sequence

Length: 2,293

>KH2012:KH.C3.5.v1.C.SL1-1
TATTGGAATAGGCAATATACACCAACATTCAAAATGAGATGGTCAACTGGTGACAAAGTG
ATGGCCAAATGGCCAGGTAGTGCTTTGTATTTTCCTGGCATCATCCAAGATATTGATGAA
GATGATGATTCTGCTGAAGTTTTGTTTAACGATGGAACAACTATGGATGTTCCCATAAAA
CATATTAAAAAAGAAGAGGAGTTTAAAAGAAGAGCAAGATCAAAGTCTCCAGCTCGATCT
CGCCGAAGATCCCAATCACCCGGTCGTAGACGTACAACACGTGCTACTGCTAAGAAGGAT
ACCGAAGTTGGAAAAGCGAATCAAAGGAATAATACTTCTTCTTCATCTGGTGAAGAAAGA
AAAGTAACTGCTATACTCAGGTCTGATGTGGAAGTATCTCAACAAGAACATATTAAGACT
ACTAAAACAACTAAGAGCCATAGCAAGGTAGAAACCAATAAAACCGTAATCCCAGACTCA
GGCTACATGGTCACAAGACAGCAGGTAAAGGAGATGTACATGTCCAAGGCAGCAATTTTG
AATGCAAAGCAGGCAGAGGAGACCCCCACCCCTGTGGTAAAGGATACTAAACAATATGAA
TATGGAGGTGTTCTTGGGGTGTTTCTCATGTACGTTACATTACCGTTGCTACCTCTTTCA
TTTCTTGTCTTCTGCAACAAAGAAGATTGCTCCATTTCCAAGGCTAAGCTGTCCATGATC
CCTCAAACATTGGAAGCATATTTTGATCAAATGTCCATCTTCATTGTGTTGGAGTTTTTA
GTATTCCACGCTATTATATATGCTCTACCACTGGGACACATTATCAAGGGTCCTGCCACA
CCAAGTGGCAAAAGATTGGATTACAGAATAAATGCCATGTACACACTAGTGCTTACACTT
GCTGCATATGCTGTTCTGTATCATTACAAGGTTCCAATCACAAGTATTAAGATGTTACCA
TTAGCTGCTACAGCCACAGTGGTCAGCTACATAGGTGTGCTACTTGTACACCTCAAGTCT
AAAAATGTTCCTGAAAATGAATTAAATCCTCACGGGAACACTGGGTCAGATCTTTACGAC
AGTTTCCTGGGTCGTGAGTTGCATCCAAGGATCGGAAGTTTGTTTGATCTTAAGCTTTAT
CTCTATAGACCTGGCATGGCTGCTTGGTTGGTGGTTGTGATGGTGGAAATGCAACGACAT
TATGAACAAAAAAACATGTTTGAACCCCAGGTTCTTGTTGTGGGGATTTCCCAGATTCTC
TACATTATCTTAGAGTTCTTCTGGGATGAGGAACAATGTCCGTTCATGTTTGATATAAAG
AATGAAGGACTTGGTTTTGTTCAGTTCTTCGGTGAACTTGTTATAGTTCCCTTCATCTAC
TCACAACCTATTACTTATGTGGTTAACCATCCACTGAAGTTGCAAAATACTCAGATTGCT
GGCATATGTCTTCTACTATTTGTTGGTATTTGTTTGATCGTCTTATCTGGTCGACAGAAG
AGCAAGTTCAGGAAAAATCCATTTGATCCAAAGCTAGCACACCTTGAAAGCCTTCCCCCC
TCCAAAGCTGGGGGTGATCGATTACTTGTGTCAGGATTTTGGGGTTTGGTTCGTCATCCC
AACTACCTGGGAGAGATTGTTGTTGGGCTTGCATGGAGTTTGGCTTGTGGTTTCAACCAC
CTTTTGCCATGGTTCTACCCTATATTCGTGATCGGCCTCCTTTTGCACCGTGCAATCCGT
GATGATGTTCGTTGTCGTGAAAAGCATGGTAAAATGTGGAAGGTCTATTGCGAGAGGGTC
AAGTACAGGGTCATACCTTACGTTTTCTAAAAAAATCTCAATTCCATACGATGTTTCAAC
TGGGCCTATACAATGTGTTGATCTCAGCGCCAAGTTTTGATACATTTTCTTAACAACTTT
GCGCCGACAGATTTCATTCCTGCTGCCTGGCTATTGTACGTTTTCAGCACCCTGACTGCC
TTATGGTTTGAATGACCATAGTTAACTTTGTTGTACAATGCTCAGGATGGTTTGTTTCTT
TGTATAGTGCAGGGGTGGGCAAATTTTAGTTCCAAGCCAAAATTGAGCGATTCAGCCTAT
TTATTAGGATCCAAATGGACAAGTAATGCATTTTTACCAAAATGATTTTTTCTGCCACTT
AGCTGCATGAACTATTAACAATTTGCAAAAAAAGCACATGAGCAAATGTTTGCCCACCCC
AGCAGTAGTGTGTATGTGTATCACAGATCTCTTGAGCTTTTTTTACAGGAATGAATTTCA
CTTTAAAGTATTC

InterProScan

SMART
Tudor (IPR002999) - T[12-70] 0.0019
Pfam
Lamin-B_rcpt_of_tudor (IPR019023) - T[13-63] 1.4E-10
Pfam
Ergosterol_biosynth_ERG4_ERG24 (IPR001171) - T[198-609] 7.6E-97
ProSiteProfiles
3-oxo-5_a-steroid_4-DH_C (IPR001104) - T[514-579] 9.033

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DHCR7_HUMAN 29.213 % 173 1.23E-47
ERG24_HUMAN 38.857 % 260 8.48E-81
LBR_HUMAN 32.512 % 318 7.41E-101