- Transcript 'KH2012:KH.C3.502.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.502.v1.A.SL3-1
Possible name(s)
SYNE1; SYNE2; SYNE3
Gene model
Location
KhC3 [23,934 / 36,704]
Amino acid sequence
Length: 1,470
>KH.C3.502.v1.A.SL3-1
QSMFTVCFYIFTNMFSPEYYDKQADYIGSLHEALDVAINNGQELPLDPNAALKICGSCKK
PQLFLANTNQEPHTPTRHLSFDQSEAGDEVTKPRQGGTYVTAVMNTLLTTRSPNSKYSDS
CSSCMNDDDEELMDLNKTLPASFSPNQNFKRRPSMRAERSMLSSSRARKYRGPGFQVSPT
RMRPRLHTAASTLSRSALSSYKYLINDEANQHDSVSSINDNKDTSMDDIPGRKNVKKSHE
MYYSLSPLLLAGSLSPPSDKISGPETPKGIPIESKITEVITDGEMVDENEPLKLEHLESR
KKSSDEISCVSDTSTATSSGAQLEYFSVISKTKKGLSNKTAPRQLEKPQPVDKAISQDSV
FSNNADGESTMPRPSHPKIMGIKSMAKSGNTFNVSSVSVTAQRPHSTPICGNVTHNLKPT
ELTDSMYSQAEPGLLSFSNVFDIGDVNTYDVNAYDVTDEVDTEMVDSDDFMKEGYCNCSF
CNNNEDMFASTQADIHGDVKHDPSSFRTPGHHHCKRSDPHLYDPPLLREDLSPTPEEKKQ
IKISPQYKEVLTLFCQCSFTQDEGLQEDIEKHSTGVASVLNLCEVLLHDADACSTDGDKE
SITEATKSLDRRWRNICALSMERRLQIEDTQRLWQKFLADFARFSDWLKSCEETASRPCT
DHVTYAVARDELRSFENFQRQVHEGLTQLELINKQYRRLARENRTDTSNQLRLMVYEGNT
RWDALSRRISCVLRRLKHAIERRELFETLRESLLVWLTEMDLQLTNLEHFSPKIENADKL
KQIKVFKKRIDDRISLLINLDERGKLLLQGGEEQDCVKLEEELNDFHEYCLQVFIRLDRY
YRRLLRVSDDSEYKNSLYHDMEMQELSWWAGGSSEVLDLPGDSPSPELTSSRKSKKQNGR
LTPGSMGSLEWDDYDMSRSEIETKIANGEMTDDDSIPELSPFETRDTTIPVKQSPLSSAN
TSQQIDKTSKRSNAVDIRDLDTDTRHKKPRTSEKMSETQRQQLNNDLEDVLSWLVNVKCD
VTENGDYVTIRDLEQKLSDLKDLQKQIEVRKPIVLSINLVTSPYSTSEEDGDELKTKLRR
MNKGWEDVEKSVLDWKRSLQRCFVRSKAFRSDVQKIQERVKDLSRRRDDLVAVVKTWESP
LSAPFSTLRKTHRDLVQIRIEILEDRAQVASLQDVSNLLFVDARYRATSSPPVDGAAEAC
DKLNDLGASLRSLLDRVADDIQVAETALQRERHRARDEVSSTSDVDSIASETSLHSSTPI
KLKMLRRKVETNEAESSEKENSKDNAAVTDQASNTDVTMPLPLATKYRTVTEYTEPDIHV
LCKHTSIKSSTGNIFLTTTNETVDSDVESGYVEYDVECELQVVRNAVNTAFQTTTVDAAC
VGIIPTKNGQSFKPHSGFVAKQDIKAKSDLFSRGIKASIPFFLFFLFLYFILWLISASCI
SDDRTICLQRNNLHYSLSPMLTWTDGPPPT
Nucleotide sequence
Length: 5,249
>KH2012:KH.C3.502.v1.A.SL3-1
AACGTATACAGGTGTTTGTTAGCAGTCGATGTTCACTGTGTGTTTTTATATATTTACTAA
CATGTTCAGTCCGGAGTATTACGACAAGCAAGCAGATTACATTGGTTCATTACACGAAGC
TCTAGACGTCGCGATAAACAATGGACAGGAGCTGCCTCTGGATCCGAACGCTGCGTTAAA
GATTTGTGGCAGTTGTAAGAAACCACAGCTTTTTCTCGCTAATACGAATCAAGAGCCACA
CACCCCGACACGCCACCTATCTTTCGACCAATCAGAAGCGGGCGATGAAGTCACTAAACC
ACGTCAGGGAGGCACCTACGTCACAGCTGTGATGAACACTTTACTTACTACTAGATCGCC
GAATTCAAAATACTCGGATTCGTGTTCTAGTTGTATGAACGACGACGACGAAGAACTAAT
GGACCTTAACAAGACCTTGCCCGCGTCTTTTTCACCAAACCAAAATTTTAAACGTCGCCC
CTCAATGCGGGCCGAGAGGTCAATGCTGTCGTCATCAAGAGCCCGGAAATACAGAGGCCC
TGGGTTCCAGGTCTCGCCAACGCGCATGCGTCCTCGGCTGCATACTGCAGCGTCTACTTT
GTCGCGTTCAGCGTTGAGTTCGTACAAATATTTAATCAACGATGAAGCAAATCAACACGA
CTCTGTTTCAAGCATAAATGACAATAAAGATACCAGCATGGACGACATTCCTGGCCGAAA
GAACGTCAAGAAATCACACGAAATGTATTACAGTCTCTCCCCACTTCTTCTAGCGGGCTC
ACTATCACCACCAAGCGATAAAATATCGGGCCCTGAAACTCCTAAAGGGATTCCAATTGA
AAGTAAAATAACGGAAGTAATTACCGATGGAGAAATGGTGGATGAAAACGAACCGTTGAA
ACTTGAGCATTTGGAAAGCCGTAAAAAGTCATCAGACGAAATAAGTTGCGTGAGTGACAC
CTCAACAGCGACGTCAAGTGGTGCTCAACTCGAATATTTCTCAGTTATATCGAAAACCAA
GAAAGGGCTCTCCAATAAAACAGCGCCGCGCCAACTTGAAAAACCTCAGCCCGTTGATAA
AGCAATATCCCAAGACTCTGTTTTCTCAAATAACGCCGATGGAGAGTCAACCATGCCTCG
TCCTAGCCATCCAAAAATTATGGGAATCAAATCTATGGCGAAATCCGGTAATACATTCAA
CGTCTCCTCCGTTAGCGTTACCGCTCAGCGACCTCACTCCACGCCTATATGCGGTAACGT
AACCCATAACTTGAAACCTACAGAACTCACGGATTCAATGTACAGTCAAGCAGAACCTGG
CCTGCTTTCGTTTTCAAACGTTTTTGATATCGGTGACGTAAACACTTATGACGTCAACGC
GTATGACGTCACAGACGAAGTGGACACGGAAATGGTTGATTCGGATGACTTCATGAAAGA
AGGATATTGTAACTGTAGCTTCTGCAACAATAACGAGGATATGTTCGCCTCCACACAAGC
AGATATACATGGTGATGTCAAACACGACCCATCATCGTTCCGGACACCAGGGCATCATCA
CTGCAAACGATCGGATCCTCATCTTTATGATCCTCCGCTGCTGCGGGAGGACTTATCTCC
AACTCCAGAAGAGAAGAAGCAAATAAAGATCAGTCCTCAATATAAAGAAGTCCTCACTCT
GTTTTGTCAGTGTAGCTTCACACAAGACGAGGGCCTCCAGGAAGACATAGAGAAGCACAG
CACCGGTGTCGCTTCGGTTCTCAATCTTTGTGAAGTTCTGTTGCATGACGCCGATGCTTG
CTCGACAGATGGCGACAAAGAGTCGATCACCGAGGCAACGAAAAGTCTTGATCGCAGATG
GAGAAATATTTGCGCCTTGTCTATGGAACGCAGGCTTCAGATTGAAGACACTCAGCGTCT
TTGGCAAAAATTTCTCGCCGATTTCGCTCGCTTCTCTGATTGGTTAAAATCTTGTGAAGA
AACTGCTTCTCGTCCTTGCACTGACCACGTGACCTACGCGGTGGCGCGTGACGAACTCCG
ATCATTCGAGAATTTCCAGCGGCAAGTTCATGAAGGATTGACTCAATTAGAGTTGATTAA
CAAGCAATACAGAAGATTGGCAAGGGAGAATAGAACGGACACGAGCAACCAACTACGACT
CATGGTGTATGAAGGCAACACACGATGGGACGCTCTCTCTCGCCGAATCTCGTGTGTTCT
ACGTCGACTCAAGCACGCCATCGAACGGCGAGAATTATTTGAGACTTTGCGTGAATCGTT
GTTGGTTTGGCTCACAGAGATGGATTTACAACTCACAAACTTGGAACATTTCAGTCCAAA
AATCGAGAATGCAGATAAACTGAAGCAAATAAAAGTGTTCAAGAAACGCATCGACGATCG
CATTTCGTTGCTCATTAATTTGGATGAAAGGGGAAAACTTTTGCTCCAAGGCGGGGAAGA
ACAAGACTGTGTGAAATTAGAAGAAGAACTGAACGATTTCCACGAGTATTGTTTGCAAGT
CTTCATTAGGTTGGATCGCTATTACAGAAGATTGCTGCGCGTATCGGACGATTCTGAATA
CAAAAATTCCCTCTACCACGACATGGAGATGCAGGAATTATCATGGTGGGCTGGTGGAAG
CAGTGAGGTTCTAGACTTACCTGGTGATTCACCATCACCTGAACTAACCAGCAGTAGAAA
ATCGAAGAAGCAAAATGGAAGACTTACCCCCGGAAGCATGGGGTCATTGGAATGGGACGA
TTATGACATGAGTAGATCTGAGATCGAAACCAAGATTGCTAACGGTGAAATGACAGATGA
TGATTCAATACCAGAATTATCCCCGTTTGAAACAAGAGATACAACGATACCGGTCAAACA
ATCTCCATTATCATCTGCCAATACGTCACAACAGATTGACAAGACGTCTAAAAGAAGCAA
CGCAGTCGACATAAGAGACCTAGACACCGATACTCGTCATAAGAAACCAAGAACCAGCGA
GAAAATGTCGGAAACGCAACGTCAGCAACTTAATAACGACCTTGAAGACGTTCTCTCATG
GCTCGTTAATGTGAAGTGTGACGTCACAGAAAATGGGGATTACGTCACCATTCGCGACTT
GGAACAAAAATTATCTGATCTAAAAGATCTCCAGAAGCAAATCGAGGTTCGCAAACCAAT
CGTTCTCTCCATTAACTTGGTGACGTCACCATACTCAACATCCGAGGAAGACGGAGACGA
GTTGAAGACGAAACTGCGTCGTATGAACAAAGGATGGGAGGACGTGGAGAAGTCTGTGCT
TGATTGGAAACGATCTCTTCAACGATGTTTCGTCCGATCTAAGGCATTCCGAAGCGATGT
GCAGAAAATACAAGAGCGAGTGAAAGATTTAAGTCGGAGAAGAGACGACTTGGTTGCAGT
GGTGAAAACATGGGAGTCTCCGTTATCTGCACCATTTTCCACACTTCGTAAAACTCATCG
AGACTTGGTGCAAATCCGCATTGAAATACTTGAAGACAGAGCGCAGGTCGCATCGCTACA
GGATGTTTCCAATTTGCTCTTCGTCGACGCTCGTTACCGTGCCACTTCCTCACCACCGGT
AGACGGCGCTGCTGAGGCCTGCGATAAATTAAACGATCTTGGTGCAAGCTTGAGGTCGTT
GCTTGATCGTGTGGCAGATGACATCCAAGTTGCTGAAACAGCCCTGCAGCGTGAGCGACA
CCGAGCGAGAGATGAAGTTAGTTCAACTTCTGACGTAGATTCAATTGCAAGTGAAACATC
GTTACATTCCTCAACACCCATTAAGCTTAAAATGCTTAGAAGAAAGGTGGAAACCAACGA
AGCGGAAAGCTCGGAAAAGGAAAATTCTAAAGACAACGCTGCAGTTACTGATCAAGCGTC
GAATACTGACGTCACCATGCCATTACCACTAGCAACGAAATACAGGACAGTGACTGAATA
TACCGAACCAGACATCCACGTACTGTGCAAGCATACCTCCATCAAAAGTTCAACCGGGAA
CATTTTCTTGACAACTACAAACGAAACCGTTGATAGTGACGTCGAATCTGGATACGTAGA
ATATGACGTAGAATGTGAACTCCAAGTTGTTCGGAACGCCGTCAATACAGCTTTCCAAAC
AACAACCGTAGATGCCGCATGCGTAGGCATAATTCCAACCAAAAATGGACAATCCTTTAA
ACCCCATAGTGGATTTGTCGCCAAACAAGATATTAAAGCCAAGTCCGATTTATTTTCGCG
TGGCATCAAAGCGTCAATACCATTTTTTCTTTTCTTTTTGTTTCTATATTTTATACTGTG
GCTAATTTCAGCATCTTGTATTTCCGACGACCGGACGATTTGTTTGCAACGTAACAATCT
ACATTATTCGTTAAGCCCAATGCTAACTTGGACTGACGGTCCACCCCCAACGTAATAATG
TCTGGGCTATATCAGGGATGCATCATTTCCGTCCTTGCTAATTCAATTTGGAGTAATCAC
ATAATTATTAAACGTACCTCTTATGTTTGTACTCATTATGTAGGTTAGTGTACAAACAGA
CTTTATTTTTGTTACTTTTCTTCAAGGTGCATCACCCCAGCACAAATTTGCACCAAAACT
GTATAGGCGTAGGCAATATTACAGCTCGTATTTCTATATGTTAGATTTTGTAGATTTGTC
ATATTTTTTTTTCGATTGCCGGCCTTACGTTGATTGCCCGTAGCTGTACTGCACTTTCTA
CTGTTAATACTAAAGTGAATGTAACGAAATTATTTTTTATTAGGTTTAGTAATTCGCCTT
TCATAAATACAACATTATTGGCTGCATTTTGTGTTTTTGAATGAATATCACGTATTTACC
GTCGCGTGACGGGGCAACGACGGTCGTTGCAACAGTGGTGTTCTGTTTCATACACTCCTT
GCCCGCTTGCAAGTTATCACACAGTTGGTATAACACGAGTGTTATATATGTTTCATAAAC
CTCATGCCTGTTTACAAGCTACCACGTATGTAACTTTGTGGGTAATTAATTCAAGAGGAG
TTTTTTATGTATCGCAATTGGGCGCGCGTGTGCCTCCATAGTTCCTACACTAACACTTAG
TGTCTCTGTTTTTTTTTGCGGCGAACGGTTGTCATCTACTTTGCATTGTTAGGTTGTGCA
AATAATGTATACGCGTTAAGCAGAGTCCGTATGTAAACATATAAACATGTTTATACACGG
ACTCTGGCGTTAAGCTATTGGTCGTAACT
| PANTHER |
SYNE1 (IPR030265) - T[560-939] 9.4E-180 - T[994-1469] 9.4E-180 |
| SMART |
Spectrin/alpha-actinin (IPR018159) - T[635-737] 0.006 - T[744-845] 7.0 - T[1001-1100] 1.7E-10 |
| Pfam |
Spectrin_repeat (IPR002017) - T[999-1100] 2.0E-8 |
| ProSiteProfiles |
KASH (IPR012315) - T[1408-1470] 11.51 |
| SMART |
KASH (IPR012315) - T[1410-1470] 2.4E-6 |
| Pfam |
KASH (IPR012315) - T[1412-1470] 1.0E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SYNE1_HUMAN | 53.083 % | 379 | 2.45E-107 |
| SYNE2_HUMAN | 35.479 % | 389 | 1.54E-110 |