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  1. Transcript 'KH2012:KH.C3.502.v2....'

Transcript Model

Transcript Id

KH2012:KH.C3.502.v2.A.nonSL6-1

Possible name(s)

SYNE1; SYNE2; SYNE3

Location

KhC3 [23,934 / 30,979]

Sequences

Amino acid sequence

Length: 709

>KH.C3.502.v2.A.nonSL6-1
ALWVLVFKMFDPDNIDSLLGEFMVFKKRIDDRISLLINLDERGKLLLQGGEEQDCVKLEE
ELNDFHEYCLQVFIRLDRYYRRLLRVSDDSEYKNSLYHDMEMQELSWWAGGSSEVLDLPG
DSPSPELTSSRKSKKQNGRLTPGSMGSLEWDDYDMSRSEIETKIANGEMTDDDSIPELSP
FETRDTTIPVKQSPLSSANTSQQIDKTSKRSNAVDIRDLDTDTRHKKPRTSEKMSETQRQ
QLNNDLEDVLSWLVNVKCDVTENGDYVTIRDLEQKLSDLKDLQKQIEVRKPIVLSINLVT
SPYSTSEEDGDELKTKLRRMNKGWEDVEKSVLDWKRSLQRCFVRSKAFRSDVQKIQERVK
DLSRRRDDLVAVVKTWESPLSAPFSTLRKTHRDLVQIRIEILEDRAQVASLQDVSNLLFV
DARYRATSSPPVDGAAEACDKLNDLGASLRSLLDRVADDIQVAETALQRERHRARDEVSS
TSDVDSIASETSLHSSTPIKLKMLRRKVETNEAESSEKENSKDNAAVTDQASNTDVTMPL
PLATKYRTVTEYTEPDIHVLCKHTSIKSSTGNIFLTTTNETVDSDVESGYVEYDVECELQ
VVRNAVNTAFQTTTVDAACVGIIPTKNGQSFKPHSGFVAKQDIKAKSDLFSRGIKASIPF
FLFFLFLYFILWLISASCISDDRTICLQRNNLHYSLSPMLTWTDGPPPT

Nucleotide sequence

Length: 2,965

>KH2012:KH.C3.502.v2.A.nonSL6-1
ATTATAACGCAGGTAGAATAGGCTTTGTGGGTTTTGGTTTTTAAAATGTTCGATCCCGAT
AATATTGACAGTTTGTTAGGTGAATTTATGGTGTTCAAGAAACGCATCGACGATCGCATT
TCGTTGCTCATTAATTTGGATGAAAGGGGAAAACTTTTGCTCCAAGGCGGGGAAGAACAA
GACTGTGTGAAATTAGAAGAAGAACTGAACGATTTCCACGAGTATTGTTTGCAAGTCTTC
ATTAGGTTGGATCGCTATTACAGAAGATTGCTGCGCGTATCGGACGATTCTGAATACAAA
AATTCCCTCTACCACGACATGGAGATGCAGGAATTATCATGGTGGGCTGGTGGAAGCAGT
GAGGTTCTAGACTTACCTGGTGATTCACCATCACCTGAACTAACCAGCAGTAGAAAATCG
AAGAAGCAAAATGGAAGACTTACCCCCGGAAGCATGGGGTCATTGGAATGGGACGATTAT
GACATGAGTAGATCTGAGATCGAAACCAAGATTGCTAACGGTGAAATGACAGATGATGAT
TCAATACCAGAATTATCCCCGTTTGAAACAAGAGATACAACGATACCGGTCAAACAATCT
CCATTATCATCTGCCAATACGTCACAACAGATTGACAAGACGTCTAAAAGAAGCAACGCA
GTCGACATAAGAGACCTAGACACCGATACTCGTCATAAGAAACCAAGAACCAGCGAGAAA
ATGTCGGAAACGCAACGTCAGCAACTTAATAACGACCTTGAAGACGTTCTCTCATGGCTC
GTTAATGTGAAGTGTGACGTCACAGAAAATGGGGATTACGTCACCATTCGCGACTTGGAA
CAAAAATTATCTGATCTAAAAGATCTCCAGAAGCAAATCGAGGTTCGCAAACCAATCGTT
CTCTCCATTAACTTGGTGACGTCACCATACTCAACATCCGAGGAAGACGGAGACGAGTTG
AAGACGAAACTGCGTCGTATGAACAAAGGATGGGAGGACGTGGAGAAGTCTGTGCTTGAT
TGGAAACGATCTCTTCAACGATGTTTCGTCCGATCTAAGGCATTCCGAAGCGATGTGCAG
AAAATACAAGAGCGAGTGAAAGATTTAAGTCGGAGAAGAGACGACTTGGTTGCAGTGGTG
AAAACATGGGAGTCTCCGTTATCTGCACCATTTTCCACACTTCGTAAAACTCATCGAGAC
TTGGTGCAAATCCGCATTGAAATACTTGAAGACAGAGCGCAGGTCGCATCGCTACAGGAT
GTTTCCAATTTGCTCTTCGTCGACGCTCGTTACCGTGCCACTTCCTCACCACCGGTAGAC
GGCGCTGCTGAGGCCTGCGATAAATTAAACGATCTTGGTGCAAGCTTGAGGTCGTTGCTT
GATCGTGTGGCAGATGACATCCAAGTTGCTGAAACAGCCCTGCAGCGTGAGCGACACCGA
GCGAGAGATGAAGTTAGTTCAACTTCTGACGTAGATTCAATTGCAAGTGAAACATCGTTA
CATTCCTCAACACCCATTAAGCTTAAAATGCTTAGAAGAAAGGTGGAAACCAACGAAGCG
GAAAGCTCGGAAAAGGAAAATTCTAAAGACAACGCTGCAGTTACTGATCAAGCGTCGAAT
ACTGACGTCACCATGCCATTACCACTAGCAACGAAATACAGGACAGTGACTGAATATACC
GAACCAGACATCCACGTACTGTGCAAGCATACCTCCATCAAAAGTTCAACCGGGAACATT
TTCTTGACAACTACAAACGAAACCGTTGATAGTGACGTCGAATCTGGATACGTAGAATAT
GACGTAGAATGTGAACTCCAAGTTGTTCGGAACGCCGTCAATACAGCTTTCCAAACAACA
ACCGTAGATGCCGCATGCGTAGGCATAATTCCAACCAAAAATGGACAATCCTTTAAACCC
CATAGTGGATTTGTCGCCAAACAAGATATTAAAGCCAAGTCCGATTTATTTTCGCGTGGC
ATCAAAGCGTCAATACCATTTTTTCTTTTCTTTTTGTTTCTATATTTTATACTGTGGCTA
ATTTCAGCATCTTGTATTTCCGACGACCGGACGATTTGTTTGCAACGTAACAATCTACAT
TATTCGTTAAGCCCAATGCTAACTTGGACTGACGGTCCACCCCCAACGTAATAATGTCTG
GGCTATATCAGGGATGCATCATTTCCGTCCTTGCTAATTCAATTTGGAGTAATCACATAA
TTATTAAACGTACCTCTTATGTTTGTACTCATTATGTAGGTTAGTGTACAAACAGACTTT
ATTTTTGTTACTTTTCTTCAAGGTGCATCACCCCAGCACAAATTTGCACCAAAACTGTAT
AGGCGTAGGCAATATTACAGCTCGTATTTCTATATGTTAGATTTTGTAGATTTGTCATAT
TTTTTTTTCGATTGCCGGCCTTACGTTGATTGCCCGTAGCTGTACTGCACTTTCTACTGT
TAATACTAAAGTGAATGTAACGAAATTATTTTTTATTAGGTTTAGTAATTCGCCTTTCAT
AAATACAACATTATTGGCTGCATTTTGTGTTTTTGAATGAATATCACGTATTTACCGTCG
CGTGACGGGGCAACGACGGTCGTTGCAACAGTGGTGTTCTGTTTCATACACTCCTTGCCC
GCTTGCAAGTTATCACACAGTTGGTATAACACGAGTGTTATATATGTTTCATAAACCTCA
TGCCTGTTTACAAGCTACCACGTATGTAACTTTGTGGGTAATTAATTCAAGAGGAGTTTT
TTATGTATCGCAATTGGGCGCGCGTGTGCCTCCATAGTTCCTACACTAACACTTAGTGTC
TCTGTTTTTTTTTGCGGCGAACGGTTGTCATCTACTTTGCATTGTTAGGTTGTGCAAATA
ATGTATACGCGTTAAGCAGAGTCCGTATGTAAACATATAAACATGTTTATACACGGACTC
TGGCGTTAAGCTATTGGTCGTAACT

InterProScan

PANTHER
SYNE1 (IPR030265) - T[41-181] 3.5E-53 - T[233-708] 3.5E-53
Pfam
Spectrin_repeat (IPR002017) - T[238-339] 7.6E-9
SMART
Spectrin/alpha-actinin (IPR018159) - T[240-339] 1.7E-10
ProSiteProfiles
KASH (IPR012315) - T[647-709] 11.51
SMART
KASH (IPR012315) - T[649-709] 2.4E-6
Pfam
KASH (IPR012315) - T[651-709] 4.2E-15

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SYNE1_HUMAN 28.571 % 91.7 8.22E-19