- Transcript 'KH2012:KH.C3.502.v2....'
Transcript Model
Transcript Id
KH2012:KH.C3.502.v2.A.nonSL6-1
Possible name(s)
SYNE1; SYNE2; SYNE3
Gene model
Location
KhC3 [23,934 / 30,979]
Amino acid sequence
Length: 709
>KH.C3.502.v2.A.nonSL6-1
ALWVLVFKMFDPDNIDSLLGEFMVFKKRIDDRISLLINLDERGKLLLQGGEEQDCVKLEE
ELNDFHEYCLQVFIRLDRYYRRLLRVSDDSEYKNSLYHDMEMQELSWWAGGSSEVLDLPG
DSPSPELTSSRKSKKQNGRLTPGSMGSLEWDDYDMSRSEIETKIANGEMTDDDSIPELSP
FETRDTTIPVKQSPLSSANTSQQIDKTSKRSNAVDIRDLDTDTRHKKPRTSEKMSETQRQ
QLNNDLEDVLSWLVNVKCDVTENGDYVTIRDLEQKLSDLKDLQKQIEVRKPIVLSINLVT
SPYSTSEEDGDELKTKLRRMNKGWEDVEKSVLDWKRSLQRCFVRSKAFRSDVQKIQERVK
DLSRRRDDLVAVVKTWESPLSAPFSTLRKTHRDLVQIRIEILEDRAQVASLQDVSNLLFV
DARYRATSSPPVDGAAEACDKLNDLGASLRSLLDRVADDIQVAETALQRERHRARDEVSS
TSDVDSIASETSLHSSTPIKLKMLRRKVETNEAESSEKENSKDNAAVTDQASNTDVTMPL
PLATKYRTVTEYTEPDIHVLCKHTSIKSSTGNIFLTTTNETVDSDVESGYVEYDVECELQ
VVRNAVNTAFQTTTVDAACVGIIPTKNGQSFKPHSGFVAKQDIKAKSDLFSRGIKASIPF
FLFFLFLYFILWLISASCISDDRTICLQRNNLHYSLSPMLTWTDGPPPT
Nucleotide sequence
Length: 2,965
>KH2012:KH.C3.502.v2.A.nonSL6-1
ATTATAACGCAGGTAGAATAGGCTTTGTGGGTTTTGGTTTTTAAAATGTTCGATCCCGAT
AATATTGACAGTTTGTTAGGTGAATTTATGGTGTTCAAGAAACGCATCGACGATCGCATT
TCGTTGCTCATTAATTTGGATGAAAGGGGAAAACTTTTGCTCCAAGGCGGGGAAGAACAA
GACTGTGTGAAATTAGAAGAAGAACTGAACGATTTCCACGAGTATTGTTTGCAAGTCTTC
ATTAGGTTGGATCGCTATTACAGAAGATTGCTGCGCGTATCGGACGATTCTGAATACAAA
AATTCCCTCTACCACGACATGGAGATGCAGGAATTATCATGGTGGGCTGGTGGAAGCAGT
GAGGTTCTAGACTTACCTGGTGATTCACCATCACCTGAACTAACCAGCAGTAGAAAATCG
AAGAAGCAAAATGGAAGACTTACCCCCGGAAGCATGGGGTCATTGGAATGGGACGATTAT
GACATGAGTAGATCTGAGATCGAAACCAAGATTGCTAACGGTGAAATGACAGATGATGAT
TCAATACCAGAATTATCCCCGTTTGAAACAAGAGATACAACGATACCGGTCAAACAATCT
CCATTATCATCTGCCAATACGTCACAACAGATTGACAAGACGTCTAAAAGAAGCAACGCA
GTCGACATAAGAGACCTAGACACCGATACTCGTCATAAGAAACCAAGAACCAGCGAGAAA
ATGTCGGAAACGCAACGTCAGCAACTTAATAACGACCTTGAAGACGTTCTCTCATGGCTC
GTTAATGTGAAGTGTGACGTCACAGAAAATGGGGATTACGTCACCATTCGCGACTTGGAA
CAAAAATTATCTGATCTAAAAGATCTCCAGAAGCAAATCGAGGTTCGCAAACCAATCGTT
CTCTCCATTAACTTGGTGACGTCACCATACTCAACATCCGAGGAAGACGGAGACGAGTTG
AAGACGAAACTGCGTCGTATGAACAAAGGATGGGAGGACGTGGAGAAGTCTGTGCTTGAT
TGGAAACGATCTCTTCAACGATGTTTCGTCCGATCTAAGGCATTCCGAAGCGATGTGCAG
AAAATACAAGAGCGAGTGAAAGATTTAAGTCGGAGAAGAGACGACTTGGTTGCAGTGGTG
AAAACATGGGAGTCTCCGTTATCTGCACCATTTTCCACACTTCGTAAAACTCATCGAGAC
TTGGTGCAAATCCGCATTGAAATACTTGAAGACAGAGCGCAGGTCGCATCGCTACAGGAT
GTTTCCAATTTGCTCTTCGTCGACGCTCGTTACCGTGCCACTTCCTCACCACCGGTAGAC
GGCGCTGCTGAGGCCTGCGATAAATTAAACGATCTTGGTGCAAGCTTGAGGTCGTTGCTT
GATCGTGTGGCAGATGACATCCAAGTTGCTGAAACAGCCCTGCAGCGTGAGCGACACCGA
GCGAGAGATGAAGTTAGTTCAACTTCTGACGTAGATTCAATTGCAAGTGAAACATCGTTA
CATTCCTCAACACCCATTAAGCTTAAAATGCTTAGAAGAAAGGTGGAAACCAACGAAGCG
GAAAGCTCGGAAAAGGAAAATTCTAAAGACAACGCTGCAGTTACTGATCAAGCGTCGAAT
ACTGACGTCACCATGCCATTACCACTAGCAACGAAATACAGGACAGTGACTGAATATACC
GAACCAGACATCCACGTACTGTGCAAGCATACCTCCATCAAAAGTTCAACCGGGAACATT
TTCTTGACAACTACAAACGAAACCGTTGATAGTGACGTCGAATCTGGATACGTAGAATAT
GACGTAGAATGTGAACTCCAAGTTGTTCGGAACGCCGTCAATACAGCTTTCCAAACAACA
ACCGTAGATGCCGCATGCGTAGGCATAATTCCAACCAAAAATGGACAATCCTTTAAACCC
CATAGTGGATTTGTCGCCAAACAAGATATTAAAGCCAAGTCCGATTTATTTTCGCGTGGC
ATCAAAGCGTCAATACCATTTTTTCTTTTCTTTTTGTTTCTATATTTTATACTGTGGCTA
ATTTCAGCATCTTGTATTTCCGACGACCGGACGATTTGTTTGCAACGTAACAATCTACAT
TATTCGTTAAGCCCAATGCTAACTTGGACTGACGGTCCACCCCCAACGTAATAATGTCTG
GGCTATATCAGGGATGCATCATTTCCGTCCTTGCTAATTCAATTTGGAGTAATCACATAA
TTATTAAACGTACCTCTTATGTTTGTACTCATTATGTAGGTTAGTGTACAAACAGACTTT
ATTTTTGTTACTTTTCTTCAAGGTGCATCACCCCAGCACAAATTTGCACCAAAACTGTAT
AGGCGTAGGCAATATTACAGCTCGTATTTCTATATGTTAGATTTTGTAGATTTGTCATAT
TTTTTTTTCGATTGCCGGCCTTACGTTGATTGCCCGTAGCTGTACTGCACTTTCTACTGT
TAATACTAAAGTGAATGTAACGAAATTATTTTTTATTAGGTTTAGTAATTCGCCTTTCAT
AAATACAACATTATTGGCTGCATTTTGTGTTTTTGAATGAATATCACGTATTTACCGTCG
CGTGACGGGGCAACGACGGTCGTTGCAACAGTGGTGTTCTGTTTCATACACTCCTTGCCC
GCTTGCAAGTTATCACACAGTTGGTATAACACGAGTGTTATATATGTTTCATAAACCTCA
TGCCTGTTTACAAGCTACCACGTATGTAACTTTGTGGGTAATTAATTCAAGAGGAGTTTT
TTATGTATCGCAATTGGGCGCGCGTGTGCCTCCATAGTTCCTACACTAACACTTAGTGTC
TCTGTTTTTTTTTGCGGCGAACGGTTGTCATCTACTTTGCATTGTTAGGTTGTGCAAATA
ATGTATACGCGTTAAGCAGAGTCCGTATGTAAACATATAAACATGTTTATACACGGACTC
TGGCGTTAAGCTATTGGTCGTAACT
| PANTHER |
SYNE1 (IPR030265) - T[41-181] 3.5E-53 - T[233-708] 3.5E-53 |
| Pfam |
Spectrin_repeat (IPR002017) - T[238-339] 7.6E-9 |
| SMART |
Spectrin/alpha-actinin (IPR018159) - T[240-339] 1.7E-10 |
| ProSiteProfiles |
KASH (IPR012315) - T[647-709] 11.51 |
| SMART |
KASH (IPR012315) - T[649-709] 2.4E-6 |
| Pfam |
KASH (IPR012315) - T[651-709] 4.2E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SYNE1_HUMAN | 28.571 % | 91.7 | 8.22E-19 |