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  1. Transcript 'KH2012:KH.L112.2.v3....'
  2. Clone 'cima825979'
  3. Transcript 'KH2012:KH.C3.502.v2....'

Transcript Model

Transcript Id

KH2012:KH.C3.502.v2.A.SL1-1

Possible name(s)

SYNE1; SYNE2; SYNE3

Location

KhC3 [23,934 / 30,967]

Sequences

Amino acid sequence

Length: 709

>KH.C3.502.v2.A.SL1-1
ALWVLVFKMFDPDNIDSLLGEFMVFKKRIDDRISLLINLDERGKLLLQGGEEQDCVKLEE
ELNDFHEYCLQVFIRLDRYYRRLLRVSDDSEYKNSLYHDMEMQELSWWAGGSSEVLDLPG
DSPSPELTSSRKSKKQNGRLTPGSMGSLEWDDYDMSRSEIETKIANGEMTDDDSIPELSP
FETRDTTIPVKQSPLSSANTSQQIDKTSKRSNAVDIRDLDTDTRHKKPRTSEKMSETQRQ
QLNNDLEDVLSWLVNVKCDVTENGDYVTIRDLEQKLSDLKDLQKQIEVRKPIVLSINLVT
SPYSTSEEDGDELKTKLRRMNKGWEDVEKSVLDWKRSLQRCFVRSKAFRSDVQKIQERVK
DLSRRRDDLVAVVKTWESPLSAPFSTLRKTHRDLVQIRIEILEDRAQVASLQDVSNLLFV
DARYRATSSPPVDGAAEACDKLNDLGASLRSLLDRVADDIQVAETALQRERHRARDEVSS
TSDVDSIASETSLHSSTPIKLKMLRRKVETNEAESSEKENSKDNAAVTDQASNTDVTMPL
PLATKYRTVTEYTEPDIHVLCKHTSIKSSTGNIFLTTTNETVDSDVESGYVEYDVECELQ
VVRNAVNTAFQTTTVDAACVGIIPTKNGQSFKPHSGFVAKQDIKAKSDLFSRGIKASIPF
FLFFLFLYFILWLISASCISDDRTICLQRNNLHYSLSPMLTWTDGPPPT

Nucleotide sequence

Length: 2,953

>KH2012:KH.C3.502.v2.A.SL1-1
GTAGAATAGGCTTTGTGGGTTTTGGTTTTTAAAATGTTCGATCCCGATAATATTGACAGT
TTGTTAGGTGAATTTATGGTGTTCAAGAAACGCATCGACGATCGCATTTCGTTGCTCATT
AATTTGGATGAAAGGGGAAAACTTTTGCTCCAAGGCGGGGAAGAACAAGACTGTGTGAAA
TTAGAAGAAGAACTGAACGATTTCCACGAGTATTGTTTGCAAGTCTTCATTAGGTTGGAT
CGCTATTACAGAAGATTGCTGCGCGTATCGGACGATTCTGAATACAAAAATTCCCTCTAC
CACGACATGGAGATGCAGGAATTATCATGGTGGGCTGGTGGAAGCAGTGAGGTTCTAGAC
TTACCTGGTGATTCACCATCACCTGAACTAACCAGCAGTAGAAAATCGAAGAAGCAAAAT
GGAAGACTTACCCCCGGAAGCATGGGGTCATTGGAATGGGACGATTATGACATGAGTAGA
TCTGAGATCGAAACCAAGATTGCTAACGGTGAAATGACAGATGATGATTCAATACCAGAA
TTATCCCCGTTTGAAACAAGAGATACAACGATACCGGTCAAACAATCTCCATTATCATCT
GCCAATACGTCACAACAGATTGACAAGACGTCTAAAAGAAGCAACGCAGTCGACATAAGA
GACCTAGACACCGATACTCGTCATAAGAAACCAAGAACCAGCGAGAAAATGTCGGAAACG
CAACGTCAGCAACTTAATAACGACCTTGAAGACGTTCTCTCATGGCTCGTTAATGTGAAG
TGTGACGTCACAGAAAATGGGGATTACGTCACCATTCGCGACTTGGAACAAAAATTATCT
GATCTAAAAGATCTCCAGAAGCAAATCGAGGTTCGCAAACCAATCGTTCTCTCCATTAAC
TTGGTGACGTCACCATACTCAACATCCGAGGAAGACGGAGACGAGTTGAAGACGAAACTG
CGTCGTATGAACAAAGGATGGGAGGACGTGGAGAAGTCTGTGCTTGATTGGAAACGATCT
CTTCAACGATGTTTCGTCCGATCTAAGGCATTCCGAAGCGATGTGCAGAAAATACAAGAG
CGAGTGAAAGATTTAAGTCGGAGAAGAGACGACTTGGTTGCAGTGGTGAAAACATGGGAG
TCTCCGTTATCTGCACCATTTTCCACACTTCGTAAAACTCATCGAGACTTGGTGCAAATC
CGCATTGAAATACTTGAAGACAGAGCGCAGGTCGCATCGCTACAGGATGTTTCCAATTTG
CTCTTCGTCGACGCTCGTTACCGTGCCACTTCCTCACCACCGGTAGACGGCGCTGCTGAG
GCCTGCGATAAATTAAACGATCTTGGTGCAAGCTTGAGGTCGTTGCTTGATCGTGTGGCA
GATGACATCCAAGTTGCTGAAACAGCCCTGCAGCGTGAGCGACACCGAGCGAGAGATGAA
GTTAGTTCAACTTCTGACGTAGATTCAATTGCAAGTGAAACATCGTTACATTCCTCAACA
CCCATTAAGCTTAAAATGCTTAGAAGAAAGGTGGAAACCAACGAAGCGGAAAGCTCGGAA
AAGGAAAATTCTAAAGACAACGCTGCAGTTACTGATCAAGCGTCGAATACTGACGTCACC
ATGCCATTACCACTAGCAACGAAATACAGGACAGTGACTGAATATACCGAACCAGACATC
CACGTACTGTGCAAGCATACCTCCATCAAAAGTTCAACCGGGAACATTTTCTTGACAACT
ACAAACGAAACCGTTGATAGTGACGTCGAATCTGGATACGTAGAATATGACGTAGAATGT
GAACTCCAAGTTGTTCGGAACGCCGTCAATACAGCTTTCCAAACAACAACCGTAGATGCC
GCATGCGTAGGCATAATTCCAACCAAAAATGGACAATCCTTTAAACCCCATAGTGGATTT
GTCGCCAAACAAGATATTAAAGCCAAGTCCGATTTATTTTCGCGTGGCATCAAAGCGTCA
ATACCATTTTTTCTTTTCTTTTTGTTTCTATATTTTATACTGTGGCTAATTTCAGCATCT
TGTATTTCCGACGACCGGACGATTTGTTTGCAACGTAACAATCTACATTATTCGTTAAGC
CCAATGCTAACTTGGACTGACGGTCCACCCCCAACGTAATAATGTCTGGGCTATATCAGG
GATGCATCATTTCCGTCCTTGCTAATTCAATTTGGAGTAATCACATAATTATTAAACGTA
CCTCTTATGTTTGTACTCATTATGTAGGTTAGTGTACAAACAGACTTTATTTTTGTTACT
TTTCTTCAAGGTGCATCACCCCAGCACAAATTTGCACCAAAACTGTATAGGCGTAGGCAA
TATTACAGCTCGTATTTCTATATGTTAGATTTTGTAGATTTGTCATATTTTTTTTTCGAT
TGCCGGCCTTACGTTGATTGCCCGTAGCTGTACTGCACTTTCTACTGTTAATACTAAAGT
GAATGTAACGAAATTATTTTTTATTAGGTTTAGTAATTCGCCTTTCATAAATACAACATT
ATTGGCTGCATTTTGTGTTTTTGAATGAATATCACGTATTTACCGTCGCGTGACGGGGCA
ACGACGGTCGTTGCAACAGTGGTGTTCTGTTTCATACACTCCTTGCCCGCTTGCAAGTTA
TCACACAGTTGGTATAACACGAGTGTTATATATGTTTCATAAACCTCATGCCTGTTTACA
AGCTACCACGTATGTAACTTTGTGGGTAATTAATTCAAGAGGAGTTTTTTATGTATCGCA
ATTGGGCGCGCGTGTGCCTCCATAGTTCCTACACTAACACTTAGTGTCTCTGTTTTTTTT
TGCGGCGAACGGTTGTCATCTACTTTGCATTGTTAGGTTGTGCAAATAATGTATACGCGT
TAAGCAGAGTCCGTATGTAAACATATAAACATGTTTATACACGGACTCTGGCGTTAAGCT
ATTGGTCGTAACT

InterProScan

PANTHER
SYNE1 (IPR030265) - T[41-181] 3.5E-53 - T[233-708] 3.5E-53
Pfam
Spectrin_repeat (IPR002017) - T[238-339] 7.6E-9
SMART
Spectrin/alpha-actinin (IPR018159) - T[240-339] 1.7E-10
ProSiteProfiles
KASH (IPR012315) - T[647-709] 11.51
SMART
KASH (IPR012315) - T[649-709] 2.4E-6
Pfam
KASH (IPR012315) - T[651-709] 4.2E-15

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SYNE1_HUMAN 28.571 % 91.7 8.22E-19