- Transcript 'KH2012:KH.L112.2.v3....' >
- Clone 'cima825979' >
- Transcript 'KH2012:KH.C3.502.v2....'
Transcript Model
Transcript Id
KH2012:KH.C3.502.v2.A.SL1-1
Possible name(s)
SYNE1; SYNE2; SYNE3
Gene model
Location
KhC3 [23,934 / 30,967]
Amino acid sequence
Length: 709
>KH.C3.502.v2.A.SL1-1
ALWVLVFKMFDPDNIDSLLGEFMVFKKRIDDRISLLINLDERGKLLLQGGEEQDCVKLEE
ELNDFHEYCLQVFIRLDRYYRRLLRVSDDSEYKNSLYHDMEMQELSWWAGGSSEVLDLPG
DSPSPELTSSRKSKKQNGRLTPGSMGSLEWDDYDMSRSEIETKIANGEMTDDDSIPELSP
FETRDTTIPVKQSPLSSANTSQQIDKTSKRSNAVDIRDLDTDTRHKKPRTSEKMSETQRQ
QLNNDLEDVLSWLVNVKCDVTENGDYVTIRDLEQKLSDLKDLQKQIEVRKPIVLSINLVT
SPYSTSEEDGDELKTKLRRMNKGWEDVEKSVLDWKRSLQRCFVRSKAFRSDVQKIQERVK
DLSRRRDDLVAVVKTWESPLSAPFSTLRKTHRDLVQIRIEILEDRAQVASLQDVSNLLFV
DARYRATSSPPVDGAAEACDKLNDLGASLRSLLDRVADDIQVAETALQRERHRARDEVSS
TSDVDSIASETSLHSSTPIKLKMLRRKVETNEAESSEKENSKDNAAVTDQASNTDVTMPL
PLATKYRTVTEYTEPDIHVLCKHTSIKSSTGNIFLTTTNETVDSDVESGYVEYDVECELQ
VVRNAVNTAFQTTTVDAACVGIIPTKNGQSFKPHSGFVAKQDIKAKSDLFSRGIKASIPF
FLFFLFLYFILWLISASCISDDRTICLQRNNLHYSLSPMLTWTDGPPPT
Nucleotide sequence
Length: 2,953
>KH2012:KH.C3.502.v2.A.SL1-1
GTAGAATAGGCTTTGTGGGTTTTGGTTTTTAAAATGTTCGATCCCGATAATATTGACAGT
TTGTTAGGTGAATTTATGGTGTTCAAGAAACGCATCGACGATCGCATTTCGTTGCTCATT
AATTTGGATGAAAGGGGAAAACTTTTGCTCCAAGGCGGGGAAGAACAAGACTGTGTGAAA
TTAGAAGAAGAACTGAACGATTTCCACGAGTATTGTTTGCAAGTCTTCATTAGGTTGGAT
CGCTATTACAGAAGATTGCTGCGCGTATCGGACGATTCTGAATACAAAAATTCCCTCTAC
CACGACATGGAGATGCAGGAATTATCATGGTGGGCTGGTGGAAGCAGTGAGGTTCTAGAC
TTACCTGGTGATTCACCATCACCTGAACTAACCAGCAGTAGAAAATCGAAGAAGCAAAAT
GGAAGACTTACCCCCGGAAGCATGGGGTCATTGGAATGGGACGATTATGACATGAGTAGA
TCTGAGATCGAAACCAAGATTGCTAACGGTGAAATGACAGATGATGATTCAATACCAGAA
TTATCCCCGTTTGAAACAAGAGATACAACGATACCGGTCAAACAATCTCCATTATCATCT
GCCAATACGTCACAACAGATTGACAAGACGTCTAAAAGAAGCAACGCAGTCGACATAAGA
GACCTAGACACCGATACTCGTCATAAGAAACCAAGAACCAGCGAGAAAATGTCGGAAACG
CAACGTCAGCAACTTAATAACGACCTTGAAGACGTTCTCTCATGGCTCGTTAATGTGAAG
TGTGACGTCACAGAAAATGGGGATTACGTCACCATTCGCGACTTGGAACAAAAATTATCT
GATCTAAAAGATCTCCAGAAGCAAATCGAGGTTCGCAAACCAATCGTTCTCTCCATTAAC
TTGGTGACGTCACCATACTCAACATCCGAGGAAGACGGAGACGAGTTGAAGACGAAACTG
CGTCGTATGAACAAAGGATGGGAGGACGTGGAGAAGTCTGTGCTTGATTGGAAACGATCT
CTTCAACGATGTTTCGTCCGATCTAAGGCATTCCGAAGCGATGTGCAGAAAATACAAGAG
CGAGTGAAAGATTTAAGTCGGAGAAGAGACGACTTGGTTGCAGTGGTGAAAACATGGGAG
TCTCCGTTATCTGCACCATTTTCCACACTTCGTAAAACTCATCGAGACTTGGTGCAAATC
CGCATTGAAATACTTGAAGACAGAGCGCAGGTCGCATCGCTACAGGATGTTTCCAATTTG
CTCTTCGTCGACGCTCGTTACCGTGCCACTTCCTCACCACCGGTAGACGGCGCTGCTGAG
GCCTGCGATAAATTAAACGATCTTGGTGCAAGCTTGAGGTCGTTGCTTGATCGTGTGGCA
GATGACATCCAAGTTGCTGAAACAGCCCTGCAGCGTGAGCGACACCGAGCGAGAGATGAA
GTTAGTTCAACTTCTGACGTAGATTCAATTGCAAGTGAAACATCGTTACATTCCTCAACA
CCCATTAAGCTTAAAATGCTTAGAAGAAAGGTGGAAACCAACGAAGCGGAAAGCTCGGAA
AAGGAAAATTCTAAAGACAACGCTGCAGTTACTGATCAAGCGTCGAATACTGACGTCACC
ATGCCATTACCACTAGCAACGAAATACAGGACAGTGACTGAATATACCGAACCAGACATC
CACGTACTGTGCAAGCATACCTCCATCAAAAGTTCAACCGGGAACATTTTCTTGACAACT
ACAAACGAAACCGTTGATAGTGACGTCGAATCTGGATACGTAGAATATGACGTAGAATGT
GAACTCCAAGTTGTTCGGAACGCCGTCAATACAGCTTTCCAAACAACAACCGTAGATGCC
GCATGCGTAGGCATAATTCCAACCAAAAATGGACAATCCTTTAAACCCCATAGTGGATTT
GTCGCCAAACAAGATATTAAAGCCAAGTCCGATTTATTTTCGCGTGGCATCAAAGCGTCA
ATACCATTTTTTCTTTTCTTTTTGTTTCTATATTTTATACTGTGGCTAATTTCAGCATCT
TGTATTTCCGACGACCGGACGATTTGTTTGCAACGTAACAATCTACATTATTCGTTAAGC
CCAATGCTAACTTGGACTGACGGTCCACCCCCAACGTAATAATGTCTGGGCTATATCAGG
GATGCATCATTTCCGTCCTTGCTAATTCAATTTGGAGTAATCACATAATTATTAAACGTA
CCTCTTATGTTTGTACTCATTATGTAGGTTAGTGTACAAACAGACTTTATTTTTGTTACT
TTTCTTCAAGGTGCATCACCCCAGCACAAATTTGCACCAAAACTGTATAGGCGTAGGCAA
TATTACAGCTCGTATTTCTATATGTTAGATTTTGTAGATTTGTCATATTTTTTTTTCGAT
TGCCGGCCTTACGTTGATTGCCCGTAGCTGTACTGCACTTTCTACTGTTAATACTAAAGT
GAATGTAACGAAATTATTTTTTATTAGGTTTAGTAATTCGCCTTTCATAAATACAACATT
ATTGGCTGCATTTTGTGTTTTTGAATGAATATCACGTATTTACCGTCGCGTGACGGGGCA
ACGACGGTCGTTGCAACAGTGGTGTTCTGTTTCATACACTCCTTGCCCGCTTGCAAGTTA
TCACACAGTTGGTATAACACGAGTGTTATATATGTTTCATAAACCTCATGCCTGTTTACA
AGCTACCACGTATGTAACTTTGTGGGTAATTAATTCAAGAGGAGTTTTTTATGTATCGCA
ATTGGGCGCGCGTGTGCCTCCATAGTTCCTACACTAACACTTAGTGTCTCTGTTTTTTTT
TGCGGCGAACGGTTGTCATCTACTTTGCATTGTTAGGTTGTGCAAATAATGTATACGCGT
TAAGCAGAGTCCGTATGTAAACATATAAACATGTTTATACACGGACTCTGGCGTTAAGCT
ATTGGTCGTAACT
| PANTHER |
SYNE1 (IPR030265) - T[41-181] 3.5E-53 - T[233-708] 3.5E-53 |
| Pfam |
Spectrin_repeat (IPR002017) - T[238-339] 7.6E-9 |
| SMART |
Spectrin/alpha-actinin (IPR018159) - T[240-339] 1.7E-10 |
| ProSiteProfiles |
KASH (IPR012315) - T[647-709] 11.51 |
| SMART |
KASH (IPR012315) - T[649-709] 2.4E-6 |
| Pfam |
KASH (IPR012315) - T[651-709] 4.2E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SYNE1_HUMAN | 28.571 % | 91.7 | 8.22E-19 |