- Transcript 'KH2012:KH.C2.288.v2....' >
- Transcript 'KH2012:KH.C3.383.v1....' >
- Transcript 'Cisavi.CG.ENS81.R48....' >
- Transcript 'KH2012:KH.C3.502.v3....'
Transcript Model
Transcript Id
KH2012:KH.C3.502.v3.A.nonSL6-1
Possible name(s)
SYNE1; SYNE2; SYNE3
Gene model
Location
KhC3 [23,934 / 30,979]
Amino acid sequence
Length: 718
>KH.C3.502.v3.A.nonSL6-1
ALWVLVFKMFDPDNIDSLLGEFMVFKKRIDDRISLLINLDERGKLLLQGGEEQDCVKLEE
ELNDFHEYCLQVFIRLDRYYRRLLRVSDDSEYKNSLYHDMEMQELSWWAGGSSEVLDLPG
DSPSPELTSSRKSKKQNGRTLKSSLKKRLTPGSMGSLEWDDYDMSRSEIETKIANGEMTD
DDSIPELSPFETRDTTIPVKQSPLSSANTSQQIDKTSKRSNAVDIRDLDTDTRHKKPRTS
EKMSETQRQQLNNDLEDVLSWLVNVKCDVTENGDYVTIRDLEQKLSDLKDLQKQIEVRKP
IVLSINLVTSPYSTSEEDGDELKTKLRRMNKGWEDVEKSVLDWKRSLQRCFVRSKAFRSD
VQKIQERVKDLSRRRDDLVAVVKTWESPLSAPFSTLRKTHRDLVQIRIEILEDRAQVASL
QDVSNLLFVDARYRATSSPPVDGAAEACDKLNDLGASLRSLLDRVADDIQVAETALQRER
HRARDEVSSTSDVDSIASETSLHSSTPIKLKMLRRKVETNEAESSEKENSKDNAAVTDQA
SNTDVTMPLPLATKYRTVTEYTEPDIHVLCKHTSIKSSTGNIFLTTTNETVDSDVESGYV
EYDVECELQVVRNAVNTAFQTTTVDAACVGIIPTKNGQSFKPHSGFVAKQDIKAKSDLFS
RGIKASIPFFLFFLFLYFILWLISASCISDDRTICLQRNNLHYSLSPMLTWTDGPPPT
Nucleotide sequence
Length: 2,992
>KH2012:KH.C3.502.v3.A.nonSL6-1
ATTATAACGCAGGTAGAATAGGCTTTGTGGGTTTTGGTTTTTAAAATGTTCGATCCCGAT
AATATTGACAGTTTGTTAGGTGAATTTATGGTGTTCAAGAAACGCATCGACGATCGCATT
TCGTTGCTCATTAATTTGGATGAAAGGGGAAAACTTTTGCTCCAAGGCGGGGAAGAACAA
GACTGTGTGAAATTAGAAGAAGAACTGAACGATTTCCACGAGTATTGTTTGCAAGTCTTC
ATTAGGTTGGATCGCTATTACAGAAGATTGCTGCGCGTATCGGACGATTCTGAATACAAA
AATTCCCTCTACCACGACATGGAGATGCAGGAATTATCATGGTGGGCTGGTGGAAGCAGT
GAGGTTCTAGACTTACCTGGTGATTCACCATCACCTGAACTAACCAGCAGTAGAAAATCG
AAGAAGCAAAATGGAAGAACTCTAAAAAGCTCTTTAAAAAAGCGACTTACCCCCGGAAGC
ATGGGGTCATTGGAATGGGACGATTATGACATGAGTAGATCTGAGATCGAAACCAAGATT
GCTAACGGTGAAATGACAGATGATGATTCAATACCAGAATTATCCCCGTTTGAAACAAGA
GATACAACGATACCGGTCAAACAATCTCCATTATCATCTGCCAATACGTCACAACAGATT
GACAAGACGTCTAAAAGAAGCAACGCAGTCGACATAAGAGACCTAGACACCGATACTCGT
CATAAGAAACCAAGAACCAGCGAGAAAATGTCGGAAACGCAACGTCAGCAACTTAATAAC
GACCTTGAAGACGTTCTCTCATGGCTCGTTAATGTGAAGTGTGACGTCACAGAAAATGGG
GATTACGTCACCATTCGCGACTTGGAACAAAAATTATCTGATCTAAAAGATCTCCAGAAG
CAAATCGAGGTTCGCAAACCAATCGTTCTCTCCATTAACTTGGTGACGTCACCATACTCA
ACATCCGAGGAAGACGGAGACGAGTTGAAGACGAAACTGCGTCGTATGAACAAAGGATGG
GAGGACGTGGAGAAGTCTGTGCTTGATTGGAAACGATCTCTTCAACGATGTTTCGTCCGA
TCTAAGGCATTCCGAAGCGATGTGCAGAAAATACAAGAGCGAGTGAAAGATTTAAGTCGG
AGAAGAGACGACTTGGTTGCAGTGGTGAAAACATGGGAGTCTCCGTTATCTGCACCATTT
TCCACACTTCGTAAAACTCATCGAGACTTGGTGCAAATCCGCATTGAAATACTTGAAGAC
AGAGCGCAGGTCGCATCGCTACAGGATGTTTCCAATTTGCTCTTCGTCGACGCTCGTTAC
CGTGCCACTTCCTCACCACCGGTAGACGGCGCTGCTGAGGCCTGCGATAAATTAAACGAT
CTTGGTGCAAGCTTGAGGTCGTTGCTTGATCGTGTGGCAGATGACATCCAAGTTGCTGAA
ACAGCCCTGCAGCGTGAGCGACACCGAGCGAGAGATGAAGTTAGTTCAACTTCTGACGTA
GATTCAATTGCAAGTGAAACATCGTTACATTCCTCAACACCCATTAAGCTTAAAATGCTT
AGAAGAAAGGTGGAAACCAACGAAGCGGAAAGCTCGGAAAAGGAAAATTCTAAAGACAAC
GCTGCAGTTACTGATCAAGCGTCGAATACTGACGTCACCATGCCATTACCACTAGCAACG
AAATACAGGACAGTGACTGAATATACCGAACCAGACATCCACGTACTGTGCAAGCATACC
TCCATCAAAAGTTCAACCGGGAACATTTTCTTGACAACTACAAACGAAACCGTTGATAGT
GACGTCGAATCTGGATACGTAGAATATGACGTAGAATGTGAACTCCAAGTTGTTCGGAAC
GCCGTCAATACAGCTTTCCAAACAACAACCGTAGATGCCGCATGCGTAGGCATAATTCCA
ACCAAAAATGGACAATCCTTTAAACCCCATAGTGGATTTGTCGCCAAACAAGATATTAAA
GCCAAGTCCGATTTATTTTCGCGTGGCATCAAAGCGTCAATACCATTTTTTCTTTTCTTT
TTGTTTCTATATTTTATACTGTGGCTAATTTCAGCATCTTGTATTTCCGACGACCGGACG
ATTTGTTTGCAACGTAACAATCTACATTATTCGTTAAGCCCAATGCTAACTTGGACTGAC
GGTCCACCCCCAACGTAATAATGTCTGGGCTATATCAGGGATGCATCATTTCCGTCCTTG
CTAATTCAATTTGGAGTAATCACATAATTATTAAACGTACCTCTTATGTTTGTACTCATT
ATGTAGGTTAGTGTACAAACAGACTTTATTTTTGTTACTTTTCTTCAAGGTGCATCACCC
CAGCACAAATTTGCACCAAAACTGTATAGGCGTAGGCAATATTACAGCTCGTATTTCTAT
ATGTTAGATTTTGTAGATTTGTCATATTTTTTTTTCGATTGCCGGCCTTACGTTGATTGC
CCGTAGCTGTACTGCACTTTCTACTGTTAATACTAAAGTGAATGTAACGAAATTATTTTT
TATTAGGTTTAGTAATTCGCCTTTCATAAATACAACATTATTGGCTGCATTTTGTGTTTT
TGAATGAATATCACGTATTTACCGTCGCGTGACGGGGCAACGACGGTCGTTGCAACAGTG
GTGTTCTGTTTCATACACTCCTTGCCCGCTTGCAAGTTATCACACAGTTGGTATAACACG
AGTGTTATATATGTTTCATAAACCTCATGCCTGTTTACAAGCTACCACGTATGTAACTTT
GTGGGTAATTAATTCAAGAGGAGTTTTTTATGTATCGCAATTGGGCGCGCGTGTGCCTCC
ATAGTTCCTACACTAACACTTAGTGTCTCTGTTTTTTTTTGCGGCGAACGGTTGTCATCT
ACTTTGCATTGTTAGGTTGTGCAAATAATGTATACGCGTTAAGCAGAGTCCGTATGTAAA
CATATAAACATGTTTATACACGGACTCTGGCGTTAAGCTATTGGTCGTAACT
| PANTHER |
SYNE1 (IPR030265) - T[41-190] 1.1E-50 - T[242-717] 1.1E-50 |
| Pfam |
Spectrin_repeat (IPR002017) - T[247-348] 7.8E-9 |
| SMART |
Spectrin/alpha-actinin (IPR018159) - T[249-348] 1.7E-10 |
| ProSiteProfiles |
KASH (IPR012315) - T[656-718] 11.51 |
| SMART |
KASH (IPR012315) - T[658-718] 2.4E-6 |
| Pfam |
KASH (IPR012315) - T[660-718] 4.2E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SYNE1_HUMAN | 28.571 % | 91.7 | 8.04E-19 |