- Transcript 'KH2012:KH.C3.502.v6....'
Transcript Model
Transcript Id
KH2012:KH.C3.502.v6.A.SL5-1
Possible name(s)
SYNE1; SYNE2; SYNE3
Gene model
Location
KhC3 [23,934 / 30,818]
Amino acid sequence
Length: 686
>KH.C3.502.v6.A.SL5-1
VFKKRIDDRISLLINLDERGKLLLQGGEEQDCVKLEEELNDFHEYCLQVFIRLDRYYRRL
LRVSDDSEYKNSLYHDMEMQELSWWAGGSSEVLDLPGDSPSPELTSSRKSKKQNGRLTPG
SMGSLEWDDYDMSRSEIETKIANGEMTDDDSIPELSPFETRDTTIPVKQSPLSSANTSQQ
IDKTSKRSNAVDIRDLDTDTRHKKPRTSEKMSETQRQQLNNDLEDVLSWLVNVKCDVTEN
GDYVTIRDLEQKLSDLKDLQKQIEVRKPIVLSINLVTSPYSTSEEDGDELKTKLRRMNKG
WEDVEKSVLDWKRSLQRCFVRSKAFRSDVQKIQERVKDLSRRRDDLVAVVKTWESPLSAP
FSTLRKTHRDLVQIRIEILEDRAQVASLQDVSNLLFVDARYRATSSPPVDGAAEACDKLN
DLGASLRSLLDRVADDIQVAETALQRERHRARDEVSSTSDVDSIASETSLHSSTPIKLKM
LRRKVETNEAESSEKENSKDNAAVTDQASNTDVTMPLPLATKYRTVTEYTEPDIHVLCKH
TSIKSSTGNIFLTTTNETVDSDVESGYVEYDVECELQVVRNAVNTAFQTTTVDAACVGII
PTKNGQSFKPHSGFVAKQDIKAKSDLFSRGIKASIPFFLFFLFLYFILWLISASCISDDR
TICLQRNNLHYSLSPMLTWTDGPPPT
Nucleotide sequence
Length: 2,875
>KH2012:KH.C3.502.v6.A.SL5-1
GTGTTCAAGAAACGCATCGACGATCGCATTTCGTTGCTCATTAATTTGGATGAAAGGGGA
AAACTTTTGCTCCAAGGCGGGGAAGAACAAGACTGTGTGAAATTAGAAGAAGAACTGAAC
GATTTCCACGAGTATTGTTTGCAAGTCTTCATTAGGTTGGATCGCTATTACAGAAGATTG
CTGCGCGTATCGGACGATTCTGAATACAAAAATTCCCTCTACCACGACATGGAGATGCAG
GAATTATCATGGTGGGCTGGTGGAAGCAGTGAGGTTCTAGACTTACCTGGTGATTCACCA
TCACCTGAACTAACCAGCAGTAGAAAATCGAAGAAGCAAAATGGAAGACTTACCCCCGGA
AGCATGGGGTCATTGGAATGGGACGATTATGACATGAGTAGATCTGAGATCGAAACCAAG
ATTGCTAACGGTGAAATGACAGATGATGATTCAATACCAGAATTATCCCCGTTTGAAACA
AGAGATACAACGATACCGGTCAAACAATCTCCATTATCATCTGCCAATACGTCACAACAG
ATTGACAAGACGTCTAAAAGAAGCAACGCAGTCGACATAAGAGACCTAGACACCGATACT
CGTCATAAGAAACCAAGAACCAGCGAGAAAATGTCGGAAACGCAACGTCAGCAACTTAAT
AACGACCTTGAAGACGTTCTCTCATGGCTCGTTAATGTGAAGTGTGACGTCACAGAAAAT
GGGGATTACGTCACCATTCGCGACTTGGAACAAAAATTATCTGATCTAAAAGATCTCCAG
AAGCAAATCGAGGTTCGCAAACCAATCGTTCTCTCCATTAACTTGGTGACGTCACCATAC
TCAACATCCGAGGAAGACGGAGACGAGTTGAAGACGAAACTGCGTCGTATGAACAAAGGA
TGGGAGGACGTGGAGAAGTCTGTGCTTGATTGGAAACGATCTCTTCAACGATGTTTCGTC
CGATCTAAGGCATTCCGAAGCGATGTGCAGAAAATACAAGAGCGAGTGAAAGATTTAAGT
CGGAGAAGAGACGACTTGGTTGCAGTGGTGAAAACATGGGAGTCTCCGTTATCTGCACCA
TTTTCCACACTTCGTAAAACTCATCGAGACTTGGTGCAAATCCGCATTGAAATACTTGAA
GACAGAGCGCAGGTCGCATCGCTACAGGATGTTTCCAATTTGCTCTTCGTCGACGCTCGT
TACCGTGCCACTTCCTCACCACCGGTAGACGGCGCTGCTGAGGCCTGCGATAAATTAAAC
GATCTTGGTGCAAGCTTGAGGTCGTTGCTTGATCGTGTGGCAGATGACATCCAAGTTGCT
GAAACAGCCCTGCAGCGTGAGCGACACCGAGCGAGAGATGAAGTTAGTTCAACTTCTGAC
GTAGATTCAATTGCAAGTGAAACATCGTTACATTCCTCAACACCCATTAAGCTTAAAATG
CTTAGAAGAAAGGTGGAAACCAACGAAGCGGAAAGCTCGGAAAAGGAAAATTCTAAAGAC
AACGCTGCAGTTACTGATCAAGCGTCGAATACTGACGTCACCATGCCATTACCACTAGCA
ACGAAATACAGGACAGTGACTGAATATACCGAACCAGACATCCACGTACTGTGCAAGCAT
ACCTCCATCAAAAGTTCAACCGGGAACATTTTCTTGACAACTACAAACGAAACCGTTGAT
AGTGACGTCGAATCTGGATACGTAGAATATGACGTAGAATGTGAACTCCAAGTTGTTCGG
AACGCCGTCAATACAGCTTTCCAAACAACAACCGTAGATGCCGCATGCGTAGGCATAATT
CCAACCAAAAATGGACAATCCTTTAAACCCCATAGTGGATTTGTCGCCAAACAAGATATT
AAAGCCAAGTCCGATTTATTTTCGCGTGGCATCAAAGCGTCAATACCATTTTTTCTTTTC
TTTTTGTTTCTATATTTTATACTGTGGCTAATTTCAGCATCTTGTATTTCCGACGACCGG
ACGATTTGTTTGCAACGTAACAATCTACATTATTCGTTAAGCCCAATGCTAACTTGGACT
GACGGTCCACCCCCAACGTAATAATGTCTGGGCTATATCAGGGATGCATCATTTCCGTCC
TTGCTAATTCAATTTGGAGTAATCACATAATTATTAAACGTACCTCTTATGTTTGTACTC
ATTATGTAGGTTAGTGTACAAACAGACTTTATTTTTGTTACTTTTCTTCAAGGTGCATCA
CCCCAGCACAAATTTGCACCAAAACTGTATAGGCGTAGGCAATATTACAGCTCGTATTTC
TATATGTTAGATTTTGTAGATTTGTCATATTTTTTTTTCGATTGCCGGCCTTACGTTGAT
TGCCCGTAGCTGTACTGCACTTTCTACTGTTAATACTAAAGTGAATGTAACGAAATTATT
TTTTATTAGGTTTAGTAATTCGCCTTTCATAAATACAACATTATTGGCTGCATTTTGTGT
TTTTGAATGAATATCACGTATTTACCGTCGCGTGACGGGGCAACGACGGTCGTTGCAACA
GTGGTGTTCTGTTTCATACACTCCTTGCCCGCTTGCAAGTTATCACACAGTTGGTATAAC
ACGAGTGTTATATATGTTTCATAAACCTCATGCCTGTTTACAAGCTACCACGTATGTAAC
TTTGTGGGTAATTAATTCAAGAGGAGTTTTTTATGTATCGCAATTGGGCGCGCGTGTGCC
TCCATAGTTCCTACACTAACACTTAGTGTCTCTGTTTTTTTTTGCGGCGAACGGTTGTCA
TCTACTTTGCATTGTTAGGTTGTGCAAATAATGTATACGCGTTAAGCAGAGTCCGTATGT
AAACATATAAACATGTTTATACACGGACTCTGGCGTTAAGCTATTGGTCGTAACT
| PANTHER |
SYNE1 (IPR030265) - T[19-159] 2.1E-53 - T[210-685] 2.1E-53 |
| Pfam |
Spectrin_repeat (IPR002017) - T[215-316] 7.3E-9 |
| SMART |
Spectrin/alpha-actinin (IPR018159) - T[217-316] 1.7E-10 |
| ProSiteProfiles |
KASH (IPR012315) - T[624-686] 11.51 |
| SMART |
KASH (IPR012315) - T[626-686] 2.4E-6 |
| Pfam |
KASH (IPR012315) - T[628-686] 4.0E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SYNE1_HUMAN | 28.571 % | 91.7 | 6.98E-19 |