- Transcript 'KH2012:KH.C3.502.v7....'
Transcript Model
Transcript Id
KH2012:KH.C3.502.v7.A.SL5-1
Possible name(s)
SYNE1; SYNE2; SYNE3
Gene model
Location
KhC3 [23,934 / 30,818]
Amino acid sequence
Length: 695
>KH.C3.502.v7.A.SL5-1
VFKKRIDDRISLLINLDERGKLLLQGGEEQDCVKLEEELNDFHEYCLQVFIRLDRYYRRL
LRVSDDSEYKNSLYHDMEMQELSWWAGGSSEVLDLPGDSPSPELTSSRKSKKQNGRTLKS
SLKKRLTPGSMGSLEWDDYDMSRSEIETKIANGEMTDDDSIPELSPFETRDTTIPVKQSP
LSSANTSQQIDKTSKRSNAVDIRDLDTDTRHKKPRTSEKMSETQRQQLNNDLEDVLSWLV
NVKCDVTENGDYVTIRDLEQKLSDLKDLQKQIEVRKPIVLSINLVTSPYSTSEEDGDELK
TKLRRMNKGWEDVEKSVLDWKRSLQRCFVRSKAFRSDVQKIQERVKDLSRRRDDLVAVVK
TWESPLSAPFSTLRKTHRDLVQIRIEILEDRAQVASLQDVSNLLFVDARYRATSSPPVDG
AAEACDKLNDLGASLRSLLDRVADDIQVAETALQRERHRARDEVSSTSDVDSIASETSLH
SSTPIKLKMLRRKVETNEAESSEKENSKDNAAVTDQASNTDVTMPLPLATKYRTVTEYTE
PDIHVLCKHTSIKSSTGNIFLTTTNETVDSDVESGYVEYDVECELQVVRNAVNTAFQTTT
VDAACVGIIPTKNGQSFKPHSGFVAKQDIKAKSDLFSRGIKASIPFFLFFLFLYFILWLI
SASCISDDRTICLQRNNLHYSLSPMLTWTDGPPPT
Nucleotide sequence
Length: 2,902
>KH2012:KH.C3.502.v7.A.SL5-1
GTGTTCAAGAAACGCATCGACGATCGCATTTCGTTGCTCATTAATTTGGATGAAAGGGGA
AAACTTTTGCTCCAAGGCGGGGAAGAACAAGACTGTGTGAAATTAGAAGAAGAACTGAAC
GATTTCCACGAGTATTGTTTGCAAGTCTTCATTAGGTTGGATCGCTATTACAGAAGATTG
CTGCGCGTATCGGACGATTCTGAATACAAAAATTCCCTCTACCACGACATGGAGATGCAG
GAATTATCATGGTGGGCTGGTGGAAGCAGTGAGGTTCTAGACTTACCTGGTGATTCACCA
TCACCTGAACTAACCAGCAGTAGAAAATCGAAGAAGCAAAATGGAAGAACTCTAAAAAGC
TCTTTAAAAAAGCGACTTACCCCCGGAAGCATGGGGTCATTGGAATGGGACGATTATGAC
ATGAGTAGATCTGAGATCGAAACCAAGATTGCTAACGGTGAAATGACAGATGATGATTCA
ATACCAGAATTATCCCCGTTTGAAACAAGAGATACAACGATACCGGTCAAACAATCTCCA
TTATCATCTGCCAATACGTCACAACAGATTGACAAGACGTCTAAAAGAAGCAACGCAGTC
GACATAAGAGACCTAGACACCGATACTCGTCATAAGAAACCAAGAACCAGCGAGAAAATG
TCGGAAACGCAACGTCAGCAACTTAATAACGACCTTGAAGACGTTCTCTCATGGCTCGTT
AATGTGAAGTGTGACGTCACAGAAAATGGGGATTACGTCACCATTCGCGACTTGGAACAA
AAATTATCTGATCTAAAAGATCTCCAGAAGCAAATCGAGGTTCGCAAACCAATCGTTCTC
TCCATTAACTTGGTGACGTCACCATACTCAACATCCGAGGAAGACGGAGACGAGTTGAAG
ACGAAACTGCGTCGTATGAACAAAGGATGGGAGGACGTGGAGAAGTCTGTGCTTGATTGG
AAACGATCTCTTCAACGATGTTTCGTCCGATCTAAGGCATTCCGAAGCGATGTGCAGAAA
ATACAAGAGCGAGTGAAAGATTTAAGTCGGAGAAGAGACGACTTGGTTGCAGTGGTGAAA
ACATGGGAGTCTCCGTTATCTGCACCATTTTCCACACTTCGTAAAACTCATCGAGACTTG
GTGCAAATCCGCATTGAAATACTTGAAGACAGAGCGCAGGTCGCATCGCTACAGGATGTT
TCCAATTTGCTCTTCGTCGACGCTCGTTACCGTGCCACTTCCTCACCACCGGTAGACGGC
GCTGCTGAGGCCTGCGATAAATTAAACGATCTTGGTGCAAGCTTGAGGTCGTTGCTTGAT
CGTGTGGCAGATGACATCCAAGTTGCTGAAACAGCCCTGCAGCGTGAGCGACACCGAGCG
AGAGATGAAGTTAGTTCAACTTCTGACGTAGATTCAATTGCAAGTGAAACATCGTTACAT
TCCTCAACACCCATTAAGCTTAAAATGCTTAGAAGAAAGGTGGAAACCAACGAAGCGGAA
AGCTCGGAAAAGGAAAATTCTAAAGACAACGCTGCAGTTACTGATCAAGCGTCGAATACT
GACGTCACCATGCCATTACCACTAGCAACGAAATACAGGACAGTGACTGAATATACCGAA
CCAGACATCCACGTACTGTGCAAGCATACCTCCATCAAAAGTTCAACCGGGAACATTTTC
TTGACAACTACAAACGAAACCGTTGATAGTGACGTCGAATCTGGATACGTAGAATATGAC
GTAGAATGTGAACTCCAAGTTGTTCGGAACGCCGTCAATACAGCTTTCCAAACAACAACC
GTAGATGCCGCATGCGTAGGCATAATTCCAACCAAAAATGGACAATCCTTTAAACCCCAT
AGTGGATTTGTCGCCAAACAAGATATTAAAGCCAAGTCCGATTTATTTTCGCGTGGCATC
AAAGCGTCAATACCATTTTTTCTTTTCTTTTTGTTTCTATATTTTATACTGTGGCTAATT
TCAGCATCTTGTATTTCCGACGACCGGACGATTTGTTTGCAACGTAACAATCTACATTAT
TCGTTAAGCCCAATGCTAACTTGGACTGACGGTCCACCCCCAACGTAATAATGTCTGGGC
TATATCAGGGATGCATCATTTCCGTCCTTGCTAATTCAATTTGGAGTAATCACATAATTA
TTAAACGTACCTCTTATGTTTGTACTCATTATGTAGGTTAGTGTACAAACAGACTTTATT
TTTGTTACTTTTCTTCAAGGTGCATCACCCCAGCACAAATTTGCACCAAAACTGTATAGG
CGTAGGCAATATTACAGCTCGTATTTCTATATGTTAGATTTTGTAGATTTGTCATATTTT
TTTTTCGATTGCCGGCCTTACGTTGATTGCCCGTAGCTGTACTGCACTTTCTACTGTTAA
TACTAAAGTGAATGTAACGAAATTATTTTTTATTAGGTTTAGTAATTCGCCTTTCATAAA
TACAACATTATTGGCTGCATTTTGTGTTTTTGAATGAATATCACGTATTTACCGTCGCGT
GACGGGGCAACGACGGTCGTTGCAACAGTGGTGTTCTGTTTCATACACTCCTTGCCCGCT
TGCAAGTTATCACACAGTTGGTATAACACGAGTGTTATATATGTTTCATAAACCTCATGC
CTGTTTACAAGCTACCACGTATGTAACTTTGTGGGTAATTAATTCAAGAGGAGTTTTTTA
TGTATCGCAATTGGGCGCGCGTGTGCCTCCATAGTTCCTACACTAACACTTAGTGTCTCT
GTTTTTTTTTGCGGCGAACGGTTGTCATCTACTTTGCATTGTTAGGTTGTGCAAATAATG
TATACGCGTTAAGCAGAGTCCGTATGTAAACATATAAACATGTTTATACACGGACTCTGG
CGTTAAGCTATTGGTCGTAACT
| PANTHER |
SYNE1 (IPR030265) - T[19-167] 4.8E-51 - T[219-694] 4.8E-51 |
| Pfam |
Spectrin_repeat (IPR002017) - T[224-325] 7.4E-9 |
| SMART |
Spectrin/alpha-actinin (IPR018159) - T[226-325] 1.7E-10 |
| ProSiteProfiles |
KASH (IPR012315) - T[633-695] 11.51 |
| SMART |
KASH (IPR012315) - T[635-695] 2.4E-6 |
| Pfam |
KASH (IPR012315) - T[637-695] 4.1E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SYNE1_HUMAN | 28.571 % | 92 | 6.17E-19 |