- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Region 'REG00001173' >
- Clone 'cijm006c18' >
- Transcript 'KH2012:KH.C10.256.v1...' >
- Transcript 'KH2012:KH.C3.719.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.719.v1.A.SL2-1
Possible name(s)
ABCF1; ABCF2; ABCF3
Gene model
Location
KhC3 [3,950,352 / 3,960,515]
Amino acid sequence
Length: 667
>KH.C3.719.v1.A.SL2-1
NTFSYTMPSEAAKRRANKKKEAAKNRQRPAKKAEEEEEVPETNGTTNGVSTNGITNGFKK
GLVITDGEADKEARSCTGVLASHPISSDLHIYNYSCTYHGQVLFQDTNLELNCGNRYGLI
GANGCGKSTMLATLGGREVPIPDHIDSFHLKNEAPPSDITPIKYVLDVADERHRLEADAE
KIMAVDPESDQLFKIYERLDELGADMAEVTASRILHGLGFTAEMQKKKLSDFSGGWRMRV
SLARALFLKPYLLLLDEPTNHLDLDACVWLEEELKKFKHILVLVSHSQDFLNGVCTKIIH
MNLKKLNYFSGNYDAFIKTRGELVENQMKRYQKEQDQINHMKDYIARFGHGSAKLARQAQ
SKEKTLAKMVDKERVREESTFNFYFPECSKLAPPVLMVQNISFRYSDETPQIYKDVEFGV
DMDTRLALVGPNGAGKSTLLKLISGELSPTDGIIRRHSHLKIARYHQHLQDHIDVNLTPL
EYIRKCYPEVKDVEQLRKIIGRYGISGKQQLCPIKKLSDGQKCRVVFAWLSSQNPNLLLL
DEPTNHLDIETIDSLAEAINEFSGGLILVSHDFRLIDQVAKDIWVCENCTVTPWTQNIRA
YKDLLRKKVLNREKKILKGESADHNAGKVKTAAVPVKKVPSPASKGSIIGIVKPKAPATV
DFWNGED
Nucleotide sequence
Length: 2,498
>KH2012:KH.C3.719.v1.A.SL2-1
ATAATACTTTCTCGTACACTATGCCATCTGAAGCTGCTAAACGCCGGGCAAACAAAAAGA
AAGAAGCCGCAAAGAATCGACAAAGACCAGCTAAGAAGGCTGAAGAAGAAGAAGAAGTTC
CTGAAACAAATGGAACTACGAACGGTGTCTCAACCAACGGAATAACAAATGGATTCAAGA
AAGGTCTCGTAATAACGGATGGAGAAGCTGACAAGGAAGCAAGATCTTGTACTGGAGTTT
TAGCTTCACATCCAATATCTTCGGATCTTCATATTTATAATTATTCGTGCACCTACCATG
GCCAGGTGTTGTTTCAAGATACGAACTTAGAGTTGAACTGTGGGAACCGATACGGATTGA
TTGGTGCCAATGGTTGTGGTAAATCCACTATGTTGGCAACGCTGGGTGGCAGAGAAGTTC
CAATTCCCGACCATATTGATTCCTTTCATTTAAAAAATGAAGCCCCACCTTCAGACATCA
CCCCCATTAAATATGTGCTTGATGTTGCAGATGAAAGACACAGATTAGAAGCAGATGCTG
AGAAAATAATGGCAGTTGATCCTGAAAGCGATCAATTGTTCAAGATCTACGAACGTTTGG
ATGAACTGGGAGCGGACATGGCAGAAGTCACGGCATCTCGTATCCTGCATGGTCTCGGAT
TCACGGCCGAGATGCAGAAGAAGAAGTTGTCGGACTTCTCTGGAGGTTGGAGGATGAGAG
TATCACTTGCCAGGGCATTATTCTTAAAGCCATATCTGTTGTTACTTGATGAACCCACCA
ACCATCTTGATCTTGATGCTTGTGTATGGCTGGAGGAAGAATTGAAAAAGTTCAAACACA
TCCTTGTACTCGTGTCGCATTCTCAAGATTTTTTGAATGGTGTTTGCACAAAGATAATCC
ACATGAATCTGAAGAAACTTAATTATTTTTCAGGTAATTACGATGCGTTTATTAAAACTC
GAGGTGAATTGGTGGAAAATCAAATGAAACGTTACCAGAAGGAACAAGATCAAATTAACC
ACATGAAGGATTACATCGCTAGATTTGGTCACGGAAGTGCTAAGCTCGCCAGGCAAGCAC
AGAGCAAAGAAAAAACTCTTGCAAAAATGGTGGACAAAGAGCGTGTACGAGAAGAAAGCA
CCTTCAACTTTTACTTCCCTGAATGTTCAAAACTTGCCCCTCCCGTGCTTATGGTGCAAA
ATATTAGTTTCCGATATTCAGATGAAACTCCCCAAATTTACAAAGACGTCGAATTCGGAG
TCGACATGGACACCAGGTTGGCGTTGGTCGGACCTAATGGGGCAGGAAAATCAACTTTGT
TGAAACTGATAAGTGGAGAGCTCAGTCCTACAGATGGAATTATTAGAAGACACAGCCATT
TGAAGATAGCAAGATATCATCAGCATCTGCAAGACCACATTGATGTAAACCTCACACCAT
TGGAATATATAAGGAAGTGTTATCCAGAGGTCAAAGACGTGGAACAGTTAAGGAAAATAA
TTGGACGATATGGGATCAGTGGAAAACAACAGCTATGCCCAATAAAGAAACTGTCAGATG
GGCAGAAGTGCCGTGTGGTATTTGCATGGCTGTCGTCCCAAAACCCCAACCTACTATTAC
TTGACGAACCTACGAACCATCTTGATATTGAAACAATTGATTCACTTGCCGAAGCAATCA
ACGAATTTAGTGGCGGTTTAATCCTAGTGTCTCATGACTTTAGACTTATTGATCAGGTAG
CTAAAGATATTTGGGTTTGTGAGAACTGCACGGTAACTCCGTGGACACAAAACATCAGAG
CTTACAAAGATTTGCTCAGGAAAAAAGTTTTAAACAGAGAAAAGAAAATATTGAAAGGTG
AAAGTGCTGATCATAACGCTGGGAAAGTTAAGACAGCAGCTGTTCCTGTTAAAAAAGTTC
CATCTCCTGCAAGCAAAGGAAGTATTATTGGCATTGTGAAACCTAAAGCCCCAGCCACTG
TCGATTTTTGGAATGGCGAGGATTAAATCTGGAAACACTAAGTTGAATTCATCTGGAAAC
ACTGCATATAGGAAATTAAATCTCTGGTGGTCACTGGCTGCCTGGAATCTTGTGTTTTTT
AGTAACGCGCATGCGCAGTGTTGCCCGGAATCGCATATTTATTACTAGGCAATTTCAAGT
TTGTATCATAGGCAATGTCTCTTATTCTCTTTCTTGCGTGCGCGTCTGTTATTGATTGCA
AACAGGGAGTTTCCTATGCCGTTTTGGAGGGCGCGTATAAATTTCCCATAAATTTCAATT
AAAACCAATAAAAAAACGGGACGCGCTGAACGTCTGGTCGATGCCAAGTTCGAAAAACGC
CCCATTGGTTGATGCGGTGACGTCTGTGGTATGACGTCATTTATTTTCGTATTTTCCTTG
TTGAAAACCAAACCCCCCAAGTATTTGTATTTATAATGAAAACCACGTTGGTAGTCGTGG
TGTGTAAAGAAAATAAAATGTGAAAAGATTGGATTTTA
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[82-172] 5.42E-40 - T[201-332] 5.42E-40 - T[374-592] 6.41E-42 |
| ProSiteProfiles |
ABC_transporter-like (IPR003439) - T[89-328] 14.072 - T[396-613] 14.493 |
| Pfam |
ABC_transporter-like (IPR003439) - T[105-260] 1.1E-21 - T[413-545] 2.4E-23 |
| SMART |
AAA+_ATPase (IPR003593) - T[113-307] 2.3E-5 - T[422-590] 2.1E-8 |
| ProSitePatterns |
ABC_transporter_CS (IPR017871) - T[232-246] . |
| Pfam |
ABC_tran_Xtn (IPR032781) - T[299-383] 1.7E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ABCF2_HUMAN | 64.791 % | 796 | 0 |
| ABCF3_HUMAN | 40.678 % | 415 | 5.92E-136 |
| ABCF1_HUMAN | 40 % | 352 | 2.92E-110 |